==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 09-MAY-95 1HRZ . COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*AP*CP*AP*AP*AP*C)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR G.M.CLORE,M.H.WERNER,J.R.HUTH,A.M.GRONENBORN . 73 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7007.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 75.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 5.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 13.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 39 53.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A D 0 0 145 0, 0.0 72,-0.3 0, 0.0 2,-0.2 0.000 360.0 360.0 360.0 -97.9 17.6 -9.9 -3.6 2 4 A R - 0 0 189 71,-0.1 3,-0.1 70,-0.1 70,-0.1 -0.539 360.0-134.7 -75.9 139.6 14.5 -9.1 -5.6 3 5 A V - 0 0 24 -2,-0.2 -1,-0.1 1,-0.2 68,-0.0 -0.318 34.4 -85.7 -83.6 174.5 11.7 -11.8 -5.5 4 6 A K - 0 0 85 59,-0.1 -1,-0.2 -2,-0.1 0, 0.0 -0.144 35.2-149.0 -73.6 177.3 9.9 -12.9 -8.6 5 7 A R - 0 0 175 -3,-0.1 3,-0.1 3,-0.0 -1,-0.0 -0.453 9.8-168.5-152.4 77.1 6.9 -11.0 -9.9 6 8 A P - 0 0 46 0, 0.0 53,-0.0 0, 0.0 0, 0.0 -0.081 50.6 -70.0 -58.5 165.3 4.1 -12.9 -11.7 7 9 A M - 0 0 133 1,-0.1 2,-0.2 4,-0.1 0, 0.0 -0.279 57.0-119.7 -58.4 143.6 1.5 -10.8 -13.5 8 10 A N > - 0 0 99 1,-0.1 4,-2.3 -3,-0.1 3,-0.2 -0.607 20.6-111.4 -87.4 148.1 -0.8 -9.0 -11.0 9 11 A A H > S+ 0 0 46 1,-0.2 4,-1.0 -2,-0.2 -1,-0.1 0.780 121.0 55.7 -48.5 -22.3 -4.6 -9.7 -11.0 10 12 A F H >> S+ 0 0 107 2,-0.2 4,-1.3 1,-0.2 3,-0.6 0.963 106.6 44.1 -77.6 -53.1 -4.8 -6.1 -12.3 11 13 A I H 3> S+ 0 0 57 1,-0.2 4,-1.9 2,-0.2 -2,-0.2 0.788 101.9 73.1 -64.3 -18.7 -2.5 -6.5 -15.3 12 14 A V H 3X S+ 0 0 33 -4,-2.3 4,-1.4 1,-0.2 5,-0.4 0.977 96.3 48.3 -57.6 -50.8 -4.4 -9.8 -15.9 13 15 A W H S+ 0 0 26 -4,-1.0 4,-1.9 -3,-0.6 5,-1.2 0.942 103.8 62.5 -54.5 -46.5 -7.4 -7.7 -17.1 14 16 A S H X>S+ 0 0 20 -4,-1.3 4,-1.8 3,-0.2 5,-0.6 0.948 101.9 50.4 -43.8 -62.6 -5.1 -5.7 -19.3 15 17 A R H X5S+ 0 0 130 -4,-1.9 4,-0.9 2,-0.2 -1,-0.2 0.931 132.6 12.1 -40.4 -73.5 -4.2 -8.8 -21.4 16 18 A D H X5S+ 0 0 100 -4,-1.4 4,-1.2 2,-0.2 3,-0.4 0.958 129.0 52.8 -76.2 -53.7 -7.8 -9.9 -22.0 17 19 A Q H >X5S+ 0 0 25 -4,-1.9 4,-1.3 -5,-0.4 3,-1.0 0.933 109.0 51.0 -52.3 -45.7 -9.9 -6.8 -20.9 18 20 A R H 3X< + 0 0 72 -4,-1.7 3,-0.5 -5,-0.4 -1,-0.2 -0.300 62.8 147.0-137.2 57.5 -11.6 1.1 -30.0 26 28 A P T 3 S+ 0 0 84 0, 0.0 -4,-0.1 0, 0.0 -1,-0.1 0.401 72.4 64.6 -70.3 4.2 -8.2 0.2 -31.5 27 29 A R T 3 + 0 0 177 -3,-0.1 2,-0.6 -5,-0.0 -5,-0.1 -0.327 63.0 156.1-125.0 54.0 -7.7 3.9 -32.2 28 30 A M < - 0 0 69 -3,-0.5 -3,-0.0 1,-0.2 -6,-0.0 -0.677 18.1-173.5 -81.8 119.8 -7.6 5.6 -28.8 29 31 A R + 0 0 211 -2,-0.6 -1,-0.2 2,-0.0 0, 0.0 0.953 66.5 32.6 -76.3 -81.3 -5.7 8.9 -29.0 30 32 A N S S- 0 0 113 1,-0.1 2,-1.0 2,-0.0 3,-0.3 0.153 106.8 -84.8 -60.4-169.8 -5.4 10.2 -25.4 31 33 A S S > S+ 0 0 72 1,-0.2 4,-0.6 2,-0.1 3,-0.2 -0.595 74.8 135.7-101.9 73.0 -4.9 7.7 -22.5 32 34 A E H > + 0 0 83 -2,-1.0 4,-2.5 1,-0.2 3,-0.4 0.871 56.3 74.7 -86.3 -40.2 -8.6 6.9 -21.8 33 35 A I H > S+ 0 0 45 -3,-0.3 4,-1.3 1,-0.2 -1,-0.2 0.756 93.7 62.0 -45.8 -19.1 -8.2 3.1 -21.4 34 36 A S H > S+ 0 0 71 -3,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.985 109.3 33.4 -73.6 -59.2 -6.7 4.1 -18.1 35 37 A K H X S+ 0 0 127 -4,-0.6 4,-1.5 -3,-0.4 -2,-0.2 0.776 112.9 65.8 -68.4 -23.3 -9.7 5.9 -16.4 36 38 A Q H X S+ 0 0 96 -4,-2.5 4,-1.3 2,-0.2 3,-0.3 0.965 101.7 45.4 -65.3 -49.1 -12.0 3.4 -18.2 37 39 A L H >X S+ 0 0 20 -4,-1.3 4,-1.8 -5,-0.3 3,-0.7 0.937 105.1 62.2 -61.1 -42.0 -10.8 0.4 -16.3 38 40 A G H 3X S+ 0 0 23 -4,-1.5 4,-1.6 1,-0.3 3,-0.3 0.919 101.8 52.8 -50.0 -41.1 -10.9 2.3 -13.0 39 41 A Y H 3< S+ 0 0 140 -4,-1.5 4,-0.4 -3,-0.3 -1,-0.3 0.883 105.1 54.7 -63.4 -35.3 -14.7 2.6 -13.7 40 42 A Q H << S+ 0 0 35 -4,-1.3 3,-0.4 -3,-0.7 -1,-0.2 0.838 102.8 58.0 -68.2 -30.4 -14.8 -1.2 -14.1 41 43 A W H >< S+ 0 0 65 -4,-1.8 3,-0.8 -3,-0.3 -2,-0.2 0.947 102.1 50.8 -67.7 -45.3 -13.2 -1.7 -10.6 42 44 A K T 3< S+ 0 0 166 -4,-1.6 -1,-0.2 1,-0.3 -2,-0.2 0.683 128.3 29.0 -66.1 -9.2 -15.9 0.3 -8.8 43 45 A M T 3 S- 0 0 83 -4,-0.4 -1,-0.3 -3,-0.4 2,-0.1 -0.532 86.8-165.9-146.7 70.7 -18.2 -2.1 -10.7 44 46 A L < - 0 0 69 -3,-0.8 2,-0.7 1,-0.1 -3,-0.1 -0.401 21.5-127.3 -64.2 132.6 -16.3 -5.4 -11.4 45 47 A T >> - 0 0 43 1,-0.2 3,-1.8 -2,-0.1 4,-1.5 -0.695 12.0-157.1 -83.0 115.2 -18.0 -7.6 -14.0 46 48 A E H 3> S+ 0 0 157 -2,-0.7 4,-0.9 1,-0.3 -1,-0.2 0.856 90.4 70.8 -61.5 -31.9 -18.5 -11.1 -12.5 47 49 A A H 34 S+ 0 0 75 1,-0.2 -1,-0.3 2,-0.1 -2,-0.1 0.730 110.2 34.5 -57.8 -17.1 -18.6 -12.5 -16.0 48 50 A E H <> S+ 0 0 60 -3,-1.8 4,-0.9 2,-0.1 5,-0.3 0.666 111.3 62.5-108.6 -27.1 -14.9 -11.7 -16.1 49 51 A K H X S+ 0 0 74 -4,-1.5 4,-2.3 2,-0.1 5,-0.3 0.999 98.8 48.8 -64.2 -73.7 -13.9 -12.4 -12.5 50 52 A W H X S+ 0 0 187 -4,-0.9 4,-1.5 1,-0.2 -1,-0.1 0.839 104.1 62.7 -34.8 -57.2 -14.6 -16.1 -12.0 51 53 A P H 4 S+ 0 0 60 0, 0.0 4,-0.5 0, 0.0 3,-0.4 0.911 120.1 16.5 -39.9 -73.9 -12.8 -17.2 -15.2 52 54 A F H X S+ 0 0 49 -4,-0.9 4,-2.1 -3,-0.2 -2,-0.2 0.719 113.8 72.6 -82.5 -17.0 -9.2 -16.0 -14.4 53 55 A F H X S+ 0 0 67 -4,-2.3 4,-1.3 -5,-0.3 -1,-0.2 0.853 86.0 69.2 -66.6 -27.8 -9.5 -15.6 -10.6 54 56 A Q H >X S+ 0 0 117 -4,-1.5 3,-1.0 -3,-0.4 4,-0.7 0.984 110.6 29.9 -52.1 -62.6 -9.7 -19.4 -10.2 55 57 A E H >> S+ 0 0 127 -4,-0.5 4,-1.7 1,-0.2 3,-1.1 0.925 106.8 73.5 -65.2 -41.8 -6.0 -19.9 -11.1 56 58 A A H 3X S+ 0 0 25 -4,-2.1 4,-1.4 1,-0.3 -1,-0.2 0.818 93.3 59.7 -43.9 -27.2 -5.0 -16.4 -9.7 57 59 A Q H X S+ 0 0 91 -4,-2.3 3,-1.0 -5,-0.2 4,-0.9 0.993 118.2 38.5 -61.9 -63.3 2.4 -21.4 -4.5 63 65 A H H >X S+ 0 0 49 -4,-1.6 4,-0.9 -5,-0.4 3,-0.6 0.864 109.7 61.8 -60.3 -33.9 4.9 -18.5 -4.6 64 66 A R H 3< S+ 0 0 138 -4,-2.3 3,-0.4 -5,-0.4 -1,-0.3 0.862 101.7 54.2 -62.9 -28.5 4.0 -17.4 -1.0 65 67 A E H << S+ 0 0 154 -4,-1.1 -1,-0.2 -3,-1.0 -2,-0.2 0.801 105.5 52.4 -74.7 -25.7 5.2 -20.8 0.1 66 68 A K H << S+ 0 0 140 -4,-0.9 -1,-0.2 -3,-0.6 -2,-0.2 0.637 119.3 35.5 -83.1 -13.0 8.6 -20.2 -1.6 67 69 A Y S < S+ 0 0 68 -4,-0.9 -1,-0.2 -3,-0.4 -2,-0.1 -0.398 70.8 169.6-137.0 60.3 9.0 -16.8 0.2 68 70 A P S S- 0 0 88 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.899 85.6 -9.5 -38.0 -80.0 7.5 -17.3 3.7 69 71 A N S S+ 0 0 146 2,-0.1 2,-0.9 0, 0.0 -5,-0.0 0.298 100.6 123.7-107.8 9.6 8.7 -14.0 5.4 70 72 A Y + 0 0 105 3,-0.0 2,-0.1 1,-0.0 3,-0.1 -0.575 40.4 175.1 -73.1 108.4 11.0 -12.9 2.6 71 73 A K - 0 0 136 -2,-0.9 2,-0.1 1,-0.2 -2,-0.1 -0.302 41.9 -55.1-102.0-170.0 9.7 -9.4 1.7 72 74 A Y 0 0 184 1,-0.1 -1,-0.2 -2,-0.1 -70,-0.1 -0.424 360.0 360.0 -68.3 139.5 11.0 -6.8 -0.7 73 75 A R 0 0 232 -72,-0.3 -1,-0.1 -2,-0.1 -71,-0.1 0.086 360.0 360.0-140.4 360.0 14.6 -5.7 -0.1