==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 09-JUN-09 3HRL . COMPND 2 MOLECULE: ENDONUCLEASE-LIKE PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE FA 1090; . AUTHOR E.V.FILIPPOVA,G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,G.COBB,A.JO . 94 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5843.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 73.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 7 7.4 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 12 12.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 36.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 0 A A 0 0 145 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-140.2 24.8 36.1 20.7 2 26 A X - 0 0 53 1,-0.1 33,-0.0 2,-0.0 0, 0.0 -0.826 360.0-112.8 -98.1 144.9 26.3 33.0 18.9 3 27 A S > - 0 0 44 -2,-0.4 4,-2.8 1,-0.1 5,-0.2 -0.188 33.2-101.0 -63.7 166.7 27.6 33.3 15.4 4 28 A E H > S+ 0 0 155 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.932 125.1 46.8 -55.8 -45.2 25.9 31.6 12.5 5 29 A A H > S+ 0 0 2 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.910 111.8 50.1 -67.3 -40.9 28.5 28.8 12.6 6 30 A E H > S+ 0 0 33 1,-0.2 4,-2.6 2,-0.2 -1,-0.2 0.935 111.2 48.4 -62.7 -46.0 28.4 28.4 16.4 7 31 A A H X S+ 0 0 43 -4,-2.8 4,-1.2 2,-0.2 -1,-0.2 0.890 110.9 51.1 -61.0 -40.5 24.6 28.1 16.4 8 32 A K H X S+ 0 0 73 -4,-2.1 4,-0.6 -5,-0.2 3,-0.3 0.924 113.7 44.8 -64.4 -44.3 24.6 25.5 13.6 9 33 A L H >X S+ 0 0 0 -4,-2.5 4,-1.5 1,-0.2 3,-1.2 0.892 104.2 62.5 -68.7 -37.6 27.2 23.4 15.5 10 34 A W H 3X S+ 0 0 25 -4,-2.6 4,-2.5 1,-0.3 -1,-0.2 0.837 94.9 62.8 -59.7 -31.0 25.3 23.8 18.9 11 35 A Q H 3< S+ 0 0 101 -4,-1.2 -1,-0.3 -3,-0.3 -2,-0.2 0.839 109.7 40.7 -61.5 -33.7 22.3 21.9 17.4 12 36 A H H << S+ 0 0 59 -3,-1.2 -1,-0.2 -4,-0.6 -2,-0.2 0.733 121.0 40.5 -84.9 -27.1 24.5 18.9 16.9 13 37 A L H >< S+ 0 0 0 -4,-1.5 10,-0.7 4,-0.2 3,-0.6 0.714 94.6 91.6 -95.4 -21.3 26.4 19.1 20.2 14 38 A R G >< S+ 0 0 115 -4,-2.5 3,-2.2 1,-0.2 4,-0.1 -0.236 85.5 20.6 -69.8 158.0 23.6 20.0 22.7 15 39 A A G 3 S- 0 0 85 1,-0.3 -1,-0.2 8,-0.3 7,-0.1 0.755 125.7 -71.0 62.8 27.8 21.6 17.5 24.6 16 40 A G G <> S+ 0 0 21 -3,-0.6 4,-1.9 5,-0.2 -1,-0.3 0.758 90.6 145.4 63.1 23.2 24.1 14.7 24.2 17 41 A R T <4 + 0 0 154 -3,-2.2 2,-1.5 2,-0.2 -4,-0.2 0.803 50.9 72.9 -66.9 -28.1 23.2 14.4 20.5 18 42 A L T >4 S- 0 0 18 3,-0.4 3,-1.9 -5,-0.3 -1,-0.2 -0.691 135.8 -53.4 -90.6 87.9 26.7 13.5 19.3 19 43 A N T 34 S- 0 0 106 -2,-1.5 -1,-0.2 1,-0.3 -2,-0.2 0.709 101.6 -60.8 53.3 31.4 26.9 10.0 20.6 20 44 A G T 3< S+ 0 0 51 -4,-1.9 -1,-0.3 1,-0.3 2,-0.2 0.323 93.2 142.5 84.8 -8.7 26.0 10.9 24.2 21 45 A Y < - 0 0 29 -3,-1.9 2,-0.7 -5,-0.2 -3,-0.4 -0.496 48.9-130.8 -70.4 133.7 28.9 13.2 24.8 22 46 A K + 0 0 171 18,-0.4 17,-0.5 -2,-0.2 2,-0.4 -0.779 29.4 177.9 -95.2 117.6 27.9 16.1 26.9 23 47 A F E -A 38 0A 9 -10,-0.7 2,-0.3 -2,-0.7 -8,-0.3 -0.895 11.0-163.7-111.4 145.7 28.9 19.5 25.7 24 48 A R E -A 37 0A 158 13,-2.4 13,-2.3 -2,-0.4 2,-0.3 -0.904 17.9-129.0-119.7 156.1 28.2 22.9 27.2 25 49 A R E S+A 36 0A 92 -2,-0.3 11,-0.3 11,-0.2 10,-0.2 -0.751 74.4 8.1-107.5 155.3 28.5 26.3 25.4 26 50 A Q E S- 0 0 78 9,-2.1 9,-0.2 8,-0.3 -1,-0.2 0.893 79.5-179.5 49.0 56.8 30.2 29.6 26.2 27 51 A Q E -A 34 0A 28 7,-1.8 7,-2.8 -3,-0.3 -1,-0.2 -0.757 25.1-128.3 -94.3 124.0 32.0 28.1 29.3 28 52 A P E +A 33 0A 90 0, 0.0 2,-0.3 0, 0.0 5,-0.3 -0.486 29.8 172.7 -67.5 135.8 34.2 30.4 31.4 29 53 A X E > -A 32 0A 43 3,-2.9 3,-2.3 -2,-0.2 2,-0.1 -0.847 61.1 -58.6-144.2 105.5 37.7 29.0 32.1 30 54 A G T 3 S- 0 0 61 -2,-0.3 -1,-0.1 1,-0.3 0, 0.0 -0.392 123.8 -9.5 59.1-127.1 40.2 31.4 33.8 31 55 A N T 3 S+ 0 0 150 -2,-0.1 -1,-0.3 -3,-0.1 2,-0.2 0.469 128.4 75.3 -70.9 -4.9 40.5 34.5 31.6 32 56 A Y E < -A 29 0A 42 -3,-2.3 -3,-2.9 24,-0.1 2,-0.4 -0.618 61.4-149.3-121.2 162.2 38.7 32.8 28.8 33 57 A I E -A 28 0A 107 -5,-0.3 2,-0.3 -2,-0.2 -7,-0.1 -0.995 24.7-151.3-124.8 121.4 35.2 31.8 27.5 34 58 A V E -A 27 0A 0 -7,-2.8 -7,-1.8 -2,-0.4 -8,-0.3 -0.764 13.8-133.7-101.1 144.6 35.3 28.7 25.3 35 59 A D E S- 0 0 29 -2,-0.3 -9,-2.1 1,-0.2 2,-0.3 0.937 87.3 -0.2 -59.7 -54.0 32.7 28.1 22.5 36 60 A F E -AB 25 45A 1 9,-1.3 9,-2.1 -11,-0.3 2,-0.4 -0.996 69.0-175.0-140.4 140.0 31.9 24.4 23.3 37 61 A X E -AB 24 44A 14 -13,-2.3 -13,-2.4 -2,-0.3 2,-0.4 -0.984 11.9-169.7-146.0 129.1 33.4 22.1 26.1 38 62 A C E > -AB 23 43A 1 5,-3.0 5,-2.0 -2,-0.4 -15,-0.2 -0.941 5.6-165.5-109.9 134.5 33.1 18.5 27.0 39 63 A V T 5S+ 0 0 78 -17,-0.5 -1,-0.1 -2,-0.4 3,-0.1 0.802 71.6 72.7 -91.0 -33.9 34.6 17.4 30.4 40 64 A T T 5S+ 0 0 106 -18,-0.3 -18,-0.4 1,-0.3 -1,-0.2 -0.900 119.1 11.3-125.3 100.3 34.5 13.7 29.8 41 65 A P T 5S- 0 0 15 0, 0.0 2,-1.2 0, 0.0 -1,-0.3 0.663 109.3-111.9 -77.0 175.0 36.7 13.4 27.8 42 66 A K T 5 + 0 0 94 22,-0.2 24,-2.3 51,-0.1 2,-0.4 -0.557 57.5 146.3 -85.5 102.1 38.3 16.8 28.0 43 67 A L E < -Bc 38 66A 0 -5,-2.0 -5,-3.0 -2,-1.2 2,-0.4 -0.993 29.8-166.1-140.3 130.3 37.7 18.5 24.7 44 68 A I E -Bc 37 67A 0 22,-3.1 24,-2.8 -2,-0.4 2,-0.4 -0.908 9.2-163.8-110.5 137.8 37.1 22.1 23.6 45 69 A V E -Bc 36 68A 0 -9,-2.1 -9,-1.3 -2,-0.4 2,-0.3 -0.991 10.3-176.5-122.8 132.6 35.7 22.8 20.1 46 70 A E E - c 0 69A 1 22,-2.4 24,-2.7 -2,-0.4 2,-0.4 -0.946 20.9-137.5-131.5 149.0 35.9 26.3 18.7 47 71 A A E - c 0 70A 10 -2,-0.3 2,-0.5 22,-0.2 24,-0.2 -0.918 19.5-157.1-105.0 131.4 34.7 28.0 15.5 48 72 A D E c 0 71A 44 22,-3.2 24,-2.5 -2,-0.4 25,-0.3 -0.942 360.0 360.0-115.2 119.7 37.1 30.5 13.8 49 73 A G 0 0 86 -2,-0.5 22,-0.1 22,-0.2 -1,-0.0 -0.037 360.0 360.0 -44.5 360.0 36.0 33.3 11.3 50 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 51 81 A V 0 0 200 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 126.0 45.8 37.1 15.7 52 82 A Y - 0 0 108 1,-0.1 2,-1.2 4,-0.0 0, 0.0 -0.632 360.0-135.1 -76.1 132.1 46.1 33.7 17.3 53 83 A D > + 0 0 77 -2,-0.4 4,-1.5 1,-0.2 3,-0.3 -0.710 26.5 177.8 -91.2 91.2 46.2 33.7 21.1 54 84 A H H > S+ 0 0 133 -2,-1.2 4,-2.3 1,-0.2 -1,-0.2 0.890 77.1 55.2 -60.8 -41.0 49.0 31.3 21.8 55 85 A A H > S+ 0 0 60 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.826 104.3 56.4 -63.5 -33.8 49.0 31.8 25.6 56 86 A R H > S+ 0 0 34 -3,-0.3 4,-2.6 2,-0.2 -1,-0.2 0.936 108.4 45.5 -61.9 -47.9 45.3 30.9 25.6 57 87 A T H X S+ 0 0 22 -4,-1.5 4,-2.8 1,-0.2 5,-0.2 0.918 112.2 51.8 -63.7 -43.5 45.9 27.5 23.9 58 88 A V H X S+ 0 0 101 -4,-2.3 4,-1.9 2,-0.2 -1,-0.2 0.903 111.4 48.2 -57.6 -41.8 48.8 26.8 26.3 59 89 A Y H X S+ 0 0 80 -4,-2.3 4,-1.1 2,-0.2 -2,-0.2 0.940 112.7 46.5 -65.8 -48.5 46.5 27.6 29.3 60 90 A L H ><>S+ 0 0 0 -4,-2.6 5,-2.0 1,-0.2 3,-0.6 0.911 112.6 50.3 -66.0 -38.6 43.7 25.4 28.1 61 91 A N H ><5S+ 0 0 82 -4,-2.8 3,-1.5 1,-0.2 -1,-0.2 0.847 104.6 59.4 -63.1 -36.9 46.1 22.6 27.3 62 92 A S H 3<5S+ 0 0 87 -4,-1.9 -1,-0.2 1,-0.3 -2,-0.2 0.769 100.3 55.6 -64.8 -25.0 47.6 23.0 30.8 63 93 A L T <<5S- 0 0 65 -4,-1.1 -1,-0.3 -3,-0.6 -2,-0.2 0.460 128.0-102.5 -83.1 -6.4 44.2 22.2 32.3 64 94 A G T < 5S+ 0 0 45 -3,-1.5 2,-0.3 1,-0.3 -3,-0.2 0.481 75.3 139.5 100.4 7.9 44.2 19.0 30.3 65 95 A F < - 0 0 10 -5,-2.0 2,-0.4 -22,-0.1 -1,-0.3 -0.635 45.6-142.8 -92.4 135.7 41.9 20.0 27.4 66 96 A T E -c 43 0A 50 -24,-2.3 -22,-3.1 -2,-0.3 2,-0.5 -0.772 20.8-148.0 -81.9 142.2 42.4 19.2 23.8 67 97 A V E -c 44 0A 32 -2,-0.4 2,-0.5 -24,-0.2 -22,-0.2 -0.973 14.0-172.5-121.2 121.8 41.3 22.1 21.6 68 98 A L E -c 45 0A 28 -24,-2.8 -22,-2.4 -2,-0.5 2,-0.4 -0.977 7.8-169.1-111.5 131.1 39.9 21.5 18.1 69 99 A R E -c 46 0A 91 -2,-0.5 2,-0.4 -24,-0.2 -22,-0.2 -0.976 2.1-171.0-128.8 125.9 39.3 24.6 16.1 70 100 A F E -c 47 0A 14 -24,-2.7 -22,-3.2 -2,-0.4 2,-0.2 -0.933 26.7-114.6-114.7 144.6 37.3 24.7 12.8 71 101 A W E >> -c 48 0A 128 -2,-0.4 4,-1.7 -24,-0.2 3,-1.0 -0.515 30.7-118.0 -66.2 145.2 36.9 27.5 10.2 72 102 A N H 3> S+ 0 0 44 -24,-2.5 4,-2.8 1,-0.3 5,-0.2 0.880 114.8 59.6 -49.7 -40.5 33.3 28.8 10.0 73 103 A H H 3> S+ 0 0 108 -25,-0.3 4,-2.6 1,-0.2 5,-0.4 0.839 103.0 50.9 -64.3 -30.8 33.2 27.6 6.3 74 104 A E H <> S+ 0 0 49 -3,-1.0 4,-2.2 2,-0.2 8,-0.3 0.916 112.9 45.9 -68.6 -41.9 33.9 24.0 7.4 75 105 A I H < S+ 0 0 0 -4,-1.7 4,-0.2 1,-0.2 -2,-0.2 0.924 119.2 41.4 -66.8 -40.8 31.1 24.2 9.9 76 106 A L H < S+ 0 0 36 -4,-2.8 3,-0.2 -5,-0.2 -2,-0.2 0.906 131.5 20.1 -76.1 -42.6 28.7 25.8 7.5 77 107 A Q H < S+ 0 0 158 -4,-2.6 -3,-0.2 -5,-0.2 -2,-0.2 0.601 131.5 36.9-107.5 -14.8 29.5 23.8 4.3 78 108 A Q X + 0 0 78 -4,-2.2 4,-2.1 -5,-0.4 3,-0.3 -0.263 68.7 143.3-131.0 43.0 31.1 20.6 5.6 79 109 A T H > + 0 0 14 1,-0.2 4,-3.0 -4,-0.2 5,-0.3 0.875 69.6 53.8 -58.4 -41.3 29.1 19.9 8.8 80 110 A N H > S+ 0 0 129 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.925 110.7 47.1 -61.6 -40.0 29.1 16.1 8.5 81 111 A D H > S+ 0 0 108 -3,-0.3 4,-2.1 2,-0.2 -1,-0.2 0.872 111.3 51.5 -68.1 -40.4 32.8 16.0 8.1 82 112 A V H X S+ 0 0 4 -4,-2.1 4,-2.5 -8,-0.3 -2,-0.2 0.932 111.1 47.4 -58.9 -49.0 33.3 18.4 11.1 83 113 A L H X S+ 0 0 19 -4,-3.0 4,-2.6 1,-0.2 -2,-0.2 0.894 110.0 54.2 -61.1 -38.1 31.0 16.2 13.3 84 114 A A H X S+ 0 0 60 -4,-2.2 4,-2.4 -5,-0.3 -1,-0.2 0.920 109.9 46.3 -62.7 -40.0 32.9 13.1 12.1 85 115 A E H X S+ 0 0 66 -4,-2.1 4,-2.2 2,-0.2 -2,-0.2 0.911 111.2 51.1 -70.0 -42.8 36.2 14.7 13.2 86 116 A I H X S+ 0 0 0 -4,-2.5 4,-2.7 1,-0.2 -2,-0.2 0.949 113.0 47.3 -56.1 -48.0 34.8 15.8 16.6 87 117 A L H X S+ 0 0 33 -4,-2.6 4,-2.6 1,-0.2 -2,-0.2 0.911 110.1 52.0 -63.9 -43.3 33.5 12.2 17.2 88 118 A R H X S+ 0 0 110 -4,-2.4 4,-2.2 2,-0.2 -1,-0.2 0.895 111.8 46.3 -58.1 -44.3 36.8 10.6 16.2 89 119 A V H X S+ 0 0 7 -4,-2.2 4,-3.0 2,-0.2 5,-0.2 0.934 110.6 52.5 -68.9 -46.4 38.8 12.8 18.6 90 120 A L H X S+ 0 0 0 -4,-2.7 4,-1.6 1,-0.2 -2,-0.2 0.943 112.8 45.3 -47.5 -51.5 36.3 12.2 21.4 91 121 A Q H X S+ 0 0 87 -4,-2.6 4,-1.0 1,-0.2 -2,-0.2 0.874 112.8 50.4 -67.6 -37.0 36.6 8.4 20.9 92 122 A E H >< S+ 0 0 87 -4,-2.2 3,-0.7 1,-0.2 -1,-0.2 0.927 108.9 51.7 -63.0 -48.6 40.5 8.7 20.7 93 123 A L H 3< S+ 0 0 69 -4,-3.0 -1,-0.2 1,-0.2 -2,-0.2 0.791 111.8 47.9 -61.7 -29.2 40.7 10.7 23.9 94 124 A E H 3< 0 0 109 -4,-1.6 -1,-0.2 -5,-0.2 -2,-0.2 0.756 360.0 360.0 -76.9 -23.5 38.6 8.0 25.6 95 125 A K << 0 0 201 -4,-1.0 -3,-0.1 -3,-0.7 -2,-0.1 0.797 360.0 360.0-106.6 360.0 40.6 5.1 24.4