==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING 17-NOV-94 1HSM . COMPND 2 MOLECULE: HIGH MOBILITY GROUP PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; . AUTHOR C.M.READ,P.D.CARY,C.CRANE-ROBINSON,P.C.DRISCOLL, . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5962.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 74.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 15.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 43 54.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A N 0 0 151 0, 0.0 74,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 55.8 -0.3 -12.3 5.7 2 4 A A - 0 0 51 64,-0.1 2,-0.1 2,-0.1 65,-0.1 0.570 360.0-122.0 116.5 90.1 0.1 -10.5 2.3 3 5 A P - 0 0 38 0, 0.0 2,-0.1 0, 0.0 64,-0.0 -0.367 35.9-162.9 -47.5 119.0 2.0 -7.2 2.3 4 6 A K - 0 0 166 -2,-0.1 63,-0.1 1,-0.1 -2,-0.1 -0.036 28.0 -70.6 -92.8-162.3 -0.5 -4.7 0.9 5 7 A R - 0 0 173 58,-0.1 -1,-0.1 -2,-0.1 3,-0.1 -0.746 38.9-156.2-100.1 147.5 0.3 -1.2 -0.5 6 8 A P - 0 0 32 0, 0.0 5,-0.1 0, 0.0 50,-0.1 -0.287 46.9 -35.9 -94.6-173.4 1.4 2.0 1.4 7 9 A P - 0 0 25 0, 0.0 53,-0.1 0, 0.0 3,-0.0 0.376 38.1-143.3 -27.1 169.1 1.0 5.7 0.4 8 10 A S - 0 0 93 -3,-0.1 49,-0.0 52,-0.0 45,-0.0 0.643 48.0-102.1-116.9 -31.6 1.3 7.3 -3.1 9 11 A A S >> S+ 0 0 4 47,-0.1 4,-1.2 43,-0.1 3,-0.7 -0.591 127.3 61.3 133.5 -52.0 3.0 10.6 -2.3 10 12 A F H 3> S+ 0 0 60 1,-0.2 4,-3.2 2,-0.2 5,-0.2 0.952 89.1 74.6 -59.8 -50.2 -0.3 12.3 -2.6 11 13 A F H 3> S+ 0 0 99 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.762 98.2 43.2 -32.7 -45.7 -1.4 10.0 0.3 12 14 A L H <> S+ 0 0 33 -3,-0.7 4,-2.3 2,-0.2 5,-0.2 0.994 116.2 45.1 -68.3 -61.2 0.6 12.2 2.8 13 15 A F H X S+ 0 0 1 -4,-1.2 4,-0.9 1,-0.2 -2,-0.2 0.846 114.6 53.6 -47.2 -39.3 -0.5 15.6 1.4 14 16 A C H >X S+ 0 0 30 -4,-3.2 4,-3.2 2,-0.2 3,-1.1 0.958 105.4 49.4 -64.4 -56.7 -4.0 14.1 1.3 15 17 A S H 3< S+ 0 0 54 -4,-2.4 -2,-0.2 1,-0.3 -1,-0.2 0.926 108.7 55.0 -48.6 -50.4 -4.1 13.0 5.0 16 18 A E H 3< S+ 0 0 102 -4,-2.3 4,-0.4 1,-0.2 -1,-0.3 0.764 119.2 33.7 -53.1 -31.8 -3.0 16.5 5.9 17 19 A Y H > S+ 0 0 68 0, 0.0 4,-2.4 0, 0.0 3,-0.6 0.992 115.8 59.1 -61.1 -63.9 -10.2 17.3 7.5 20 22 A K H 3> S+ 0 0 132 -4,-0.4 4,-1.0 1,-0.3 -2,-0.2 0.713 117.1 30.2 -36.3 -40.0 -9.1 20.9 6.4 21 23 A I H 3X S+ 0 0 17 -4,-2.0 4,-1.9 2,-0.2 -1,-0.3 0.698 116.4 57.8 -97.9 -23.5 -11.1 20.8 3.1 22 24 A K H << S+ 0 0 80 -4,-1.1 -2,-0.2 -3,-0.6 6,-0.2 0.740 113.6 41.4 -75.7 -24.7 -13.8 18.6 4.3 23 25 A G H < S+ 0 0 54 -4,-2.4 -2,-0.2 -5,-0.1 -3,-0.2 0.829 119.3 42.6 -89.4 -40.1 -14.5 21.2 7.0 24 26 A E H < S+ 0 0 143 -4,-1.0 -2,-0.2 -5,-0.4 -3,-0.2 0.802 128.5 32.4 -75.2 -31.1 -14.0 24.2 4.8 25 27 A H >< + 0 0 75 -4,-1.9 3,-1.1 1,-0.0 2,-0.9 -0.690 68.9 169.1-127.3 73.1 -16.1 22.5 2.0 26 28 A P T 3 + 0 0 110 0, 0.0 -4,-0.1 0, 0.0 -3,-0.1 -0.103 68.0 77.6 -77.9 37.4 -18.6 20.3 4.0 27 29 A G T 3 S+ 0 0 71 -2,-0.9 2,-0.2 2,-0.1 -5,-0.1 0.117 78.9 89.5-129.3 11.6 -20.4 19.8 0.6 28 30 A L < - 0 0 57 -3,-1.1 2,-0.2 -6,-0.2 -3,-0.0 -0.692 62.9-143.1-110.9 163.4 -17.8 17.2 -0.7 29 31 A S >> - 0 0 74 -2,-0.2 4,-3.0 -3,-0.0 3,-1.9 -0.575 44.6 -86.1-114.2 177.0 -17.7 13.4 -0.4 30 32 A I T 34 S+ 0 0 127 1,-0.3 4,-0.0 -2,-0.2 -12,-0.0 0.621 133.5 50.9 -64.0 -9.7 -14.6 11.2 0.1 31 33 A G T 34 S+ 0 0 45 3,-0.1 -1,-0.3 2,-0.1 4,-0.2 0.444 114.2 41.8-104.2 -5.5 -14.3 11.3 -3.7 32 34 A D T <> S+ 0 0 64 -3,-1.9 4,-3.2 2,-0.2 5,-0.3 0.757 113.4 49.3-105.9 -46.3 -14.6 15.1 -3.9 33 35 A V H X S+ 0 0 3 -4,-3.0 4,-1.1 1,-0.2 -3,-0.2 0.805 120.5 42.0 -63.1 -28.1 -12.3 15.9 -1.0 34 36 A A H > S+ 0 0 38 -5,-0.4 4,-2.0 2,-0.2 -1,-0.2 0.841 113.9 49.7 -87.2 -40.1 -10.0 13.5 -2.7 35 37 A K H > S+ 0 0 140 -4,-0.2 4,-2.0 2,-0.2 -2,-0.2 0.940 114.7 44.6 -65.0 -46.0 -10.6 14.7 -6.2 36 38 A K H X S+ 0 0 72 -4,-3.2 4,-2.1 2,-0.2 3,-0.3 0.980 119.3 39.4 -62.2 -60.3 -10.0 18.4 -5.3 37 39 A L H X S+ 0 0 5 -4,-1.1 4,-3.1 -5,-0.3 -1,-0.2 0.863 109.5 64.0 -61.9 -33.2 -6.9 17.9 -3.2 38 40 A G H X S+ 0 0 7 -4,-2.0 4,-2.2 1,-0.2 -1,-0.2 0.952 105.5 44.9 -54.6 -47.2 -5.8 15.2 -5.8 39 41 A E H X S+ 0 0 92 -4,-2.0 4,-2.2 -3,-0.3 -2,-0.2 0.965 111.4 52.8 -59.2 -52.2 -5.6 18.1 -8.4 40 42 A M H < S+ 0 0 83 -4,-2.1 -2,-0.2 1,-0.2 -1,-0.2 0.924 107.2 53.0 -46.7 -53.7 -3.8 20.3 -5.8 41 43 A W H >< S+ 0 0 17 -4,-3.1 3,-1.8 1,-0.3 -1,-0.2 0.917 105.9 52.6 -48.1 -54.0 -1.3 17.5 -5.3 42 44 A N H 3< S+ 0 0 95 -4,-2.2 -1,-0.3 1,-0.3 3,-0.3 0.892 122.7 31.1 -51.8 -43.8 -0.6 17.3 -9.0 43 45 A N T 3< S+ 0 0 117 -4,-2.2 -1,-0.3 -3,-0.2 -2,-0.2 -0.374 83.2 115.2-110.2 49.7 0.0 21.1 -9.0 44 46 A T S < S- 0 0 27 -3,-1.8 -1,-0.2 -2,-0.1 -3,-0.1 0.474 100.6 -87.3 -96.4 -1.1 1.4 21.4 -5.4 45 47 A A - 0 0 65 -3,-0.3 -3,-0.1 -4,-0.2 -4,-0.1 -0.465 39.5-121.7 129.8 -52.6 4.8 22.5 -6.9 46 48 A A S >> S+ 0 0 45 -5,-0.2 4,-2.3 0, 0.0 3,-0.5 -0.423 114.8 67.7 109.7 -42.1 6.5 19.1 -7.4 47 49 A D T 34 S+ 0 0 142 1,-0.2 -2,-0.1 2,-0.2 0, 0.0 0.508 100.1 49.7 -79.0 -5.8 9.2 20.4 -5.1 48 50 A D T 34 S+ 0 0 62 2,-0.1 4,-0.4 -7,-0.1 -1,-0.2 0.394 107.6 54.3-108.3 -7.8 6.4 20.2 -2.4 49 51 A K T X> S+ 0 0 43 -3,-0.5 4,-2.8 2,-0.1 3,-1.8 0.907 92.9 71.0 -88.4 -56.1 5.6 16.6 -3.5 50 52 A Q H 3X S+ 0 0 112 -4,-2.3 4,-2.9 1,-0.3 5,-0.2 0.733 93.5 55.1 -26.1 -58.0 9.1 15.4 -3.0 51 53 A P H 34 S+ 0 0 60 0, 0.0 4,-0.5 0, 0.0 -1,-0.3 0.877 120.6 31.0 -46.3 -47.6 9.0 15.6 0.9 52 54 A Y H X> S+ 0 0 39 -3,-1.8 4,-1.7 -4,-0.4 3,-1.2 0.914 116.3 59.3 -77.0 -50.6 5.9 13.4 1.0 53 55 A E H 3X S+ 0 0 72 -4,-2.8 4,-2.9 1,-0.3 5,-0.2 0.898 95.8 61.2 -44.4 -56.9 6.8 11.4 -2.1 54 56 A K H 3X S+ 0 0 169 -4,-2.9 4,-2.3 1,-0.2 -1,-0.3 0.818 106.7 48.4 -43.9 -37.7 10.1 10.2 -0.5 55 57 A K H <> S+ 0 0 97 -3,-1.2 4,-2.5 -4,-0.5 5,-0.2 0.991 109.5 49.2 -69.6 -61.0 8.0 8.5 2.2 56 58 A A H X S+ 0 0 5 -4,-1.7 4,-2.8 1,-0.2 5,-0.2 0.889 114.7 47.9 -42.4 -49.6 5.5 6.9 -0.1 57 59 A A H X S+ 0 0 57 -4,-2.9 4,-3.0 2,-0.2 5,-0.2 0.979 108.4 51.9 -56.8 -64.1 8.4 5.5 -2.2 58 60 A K H X S+ 0 0 143 -4,-2.3 4,-2.4 1,-0.2 -1,-0.2 0.853 115.4 43.8 -41.6 -46.7 10.4 4.2 0.9 59 61 A L H X S+ 0 0 69 -4,-2.5 4,-2.8 2,-0.2 -1,-0.2 0.960 111.2 49.5 -71.0 -51.7 7.3 2.3 2.0 60 62 A K H X S+ 0 0 79 -4,-2.8 4,-2.7 -5,-0.2 -2,-0.2 0.941 113.1 51.9 -51.1 -45.8 6.2 0.9 -1.4 61 63 A E H X S+ 0 0 112 -4,-3.0 4,-1.2 -5,-0.2 5,-0.2 0.959 108.5 48.5 -53.4 -56.9 9.8 -0.2 -1.7 62 64 A K H >X S+ 0 0 131 -4,-2.4 4,-2.0 -5,-0.2 3,-1.2 0.940 111.4 51.7 -48.9 -53.2 9.7 -1.9 1.8 63 65 A Y H >X S+ 0 0 49 -4,-2.8 4,-2.3 1,-0.3 3,-0.9 0.940 103.1 56.7 -46.7 -63.5 6.5 -3.7 0.8 64 66 A E H 3X S+ 0 0 71 -4,-2.7 4,-1.1 1,-0.3 -1,-0.3 0.704 113.2 41.4 -43.7 -29.7 7.8 -5.0 -2.4 65 67 A K H S+ 0 0 44 -4,-1.7 5,-2.3 1,-0.2 4,-2.1 0.889 117.1 31.5 -48.5 -44.1 6.4 -13.2 2.1 71 73 A R H <5S+ 0 0 165 -4,-2.8 -1,-0.2 2,-0.2 -2,-0.2 0.812 106.4 71.5 -83.9 -37.0 6.3 -15.5 -0.9 72 74 A A H <5S- 0 0 79 -4,-1.0 -2,-0.2 -5,-0.4 -1,-0.2 0.852 140.9 -61.3 -44.4 -40.9 10.1 -16.4 -0.6 73 75 A K H <5S+ 0 0 145 -4,-2.1 -2,-0.2 6,-0.1 -1,-0.2 0.140 107.0 115.5 149.1 68.9 8.9 -18.3 2.5 74 76 A G T <> + 0 0 33 -4,-2.1 5,-0.7 -7,-0.1 4,-0.3 0.695 43.1 113.8-115.7 -49.2 7.4 -15.7 4.9 75 77 A K T >>