==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING 17-NOV-94 1HSN . COMPND 2 MOLECULE: HIGH MOBILITY GROUP PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; . AUTHOR C.M.READ,P.D.CARY,C.CRANE-ROBINSON,P.C.DRISCOLL, . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6081.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 68.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 16.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 40 50.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A N 0 0 165 0, 0.0 66,-0.1 0, 0.0 74,-0.0 0.000 360.0 360.0 360.0-178.2 -1.9 -11.6 2.4 2 4 A A - 0 0 55 64,-0.2 65,-0.1 1,-0.1 3,-0.1 0.938 360.0-133.5 65.4 95.9 -0.9 -8.7 0.1 3 5 A P - 0 0 61 0, 0.0 -1,-0.1 0, 0.0 60,-0.1 0.586 47.3-139.2 -49.3 -12.0 1.2 -6.1 2.0 4 6 A K - 0 0 155 59,-0.1 -2,-0.1 1,-0.1 63,-0.0 0.043 26.0 -64.3 70.3 178.7 -1.2 -3.6 0.3 5 7 A R - 0 0 135 -3,-0.1 55,-0.1 58,-0.1 -1,-0.1 -0.897 50.6-153.6-103.5 112.0 -0.1 -0.3 -1.2 6 8 A P - 0 0 35 0, 0.0 50,-0.1 0, 0.0 -1,-0.0 0.109 53.1 -31.6 -59.3-175.4 1.2 2.2 1.4 7 9 A P - 0 0 25 0, 0.0 53,-0.2 0, 0.0 52,-0.0 0.086 46.0-151.3 -34.4 151.7 1.0 6.1 0.8 8 10 A S - 0 0 55 -3,-0.1 45,-0.1 51,-0.1 49,-0.1 0.281 51.3 -98.3-116.2 6.6 1.3 7.4 -2.8 9 11 A A S > S+ 0 0 3 43,-0.1 4,-1.5 42,-0.0 5,-0.2 -0.426 126.5 72.7 105.4 -43.9 2.8 10.8 -1.8 10 12 A F H > S+ 0 0 53 1,-0.2 4,-0.9 2,-0.2 31,-0.1 0.477 87.0 64.3 -73.0 -9.0 -0.7 12.1 -2.1 11 13 A F H > S+ 0 0 116 2,-0.2 4,-2.7 3,-0.2 5,-0.2 0.920 101.0 46.1 -85.0 -48.5 -1.5 10.3 1.2 12 14 A L H > S+ 0 0 45 1,-0.2 4,-2.2 2,-0.2 -2,-0.2 0.971 119.6 40.3 -56.6 -57.4 0.8 12.3 3.4 13 15 A F H X S+ 0 0 4 -4,-1.5 4,-1.4 1,-0.2 -1,-0.2 0.910 112.9 57.0 -60.5 -42.5 -0.3 15.6 2.0 14 16 A C H >< S+ 0 0 14 -4,-0.9 3,-0.6 1,-0.2 -2,-0.2 0.955 109.1 45.2 -53.0 -54.6 -4.0 14.4 1.9 15 17 A S H >< S+ 0 0 60 -4,-2.7 3,-2.1 1,-0.2 -1,-0.2 0.946 101.9 67.2 -51.7 -57.2 -4.0 13.7 5.6 16 18 A E H 3< S+ 0 0 108 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.770 123.8 10.7 -32.7 -50.0 -2.3 17.0 6.5 17 19 A Y T S+ 0 0 111 -3,-2.1 4,-2.1 2,-0.2 3,-0.8 0.931 84.7 46.8 -86.6 -51.4 -8.2 16.5 4.8 19 21 A P H 34 S+ 0 0 85 0, 0.0 4,-0.4 0, 0.0 -1,-0.1 0.675 112.4 57.4 -59.2 -15.8 -10.3 17.6 7.9 20 22 A K H 3> S+ 0 0 127 2,-0.2 4,-1.1 3,-0.1 -2,-0.2 0.782 110.0 37.7 -86.7 -31.0 -9.5 21.1 6.6 21 23 A I H < + 0 0 98 -4,-2.3 3,-0.6 -5,-0.1 2,-0.4 -0.768 62.4 167.9-124.5 79.4 -16.4 21.5 2.1 26 28 A P T 3 S+ 0 0 106 0, 0.0 -4,-0.1 0, 0.0 -3,-0.1 -0.152 71.1 78.2 -77.6 37.6 -18.3 19.0 4.3 27 29 A G T 3 + 0 0 65 -2,-0.4 2,-0.3 2,-0.1 -5,-0.1 -0.039 66.8 114.8-136.1 27.6 -19.9 17.9 1.0 28 30 A L < - 0 0 28 -3,-0.6 2,-0.2 -6,-0.1 -6,-0.0 -0.701 43.3-163.8-102.9 155.9 -17.1 15.8 -0.4 29 31 A S >> - 0 0 58 -2,-0.3 4,-2.9 0, 0.0 3,-0.9 -0.528 50.0 -82.4-120.6-173.9 -17.2 12.0 -1.1 30 32 A I T 34 S+ 0 0 151 1,-0.3 -2,-0.0 -2,-0.2 0, 0.0 0.460 136.3 51.6 -76.3 4.0 -14.3 9.7 -1.7 31 33 A G T 34 S+ 0 0 39 3,-0.1 4,-0.3 2,-0.1 -1,-0.3 0.526 115.9 36.5-110.7 -17.3 -14.6 11.0 -5.3 32 34 A D T <> S+ 0 0 61 -3,-0.9 4,-3.2 2,-0.2 5,-0.3 0.791 116.8 48.8-104.7 -42.6 -14.5 14.7 -4.3 33 35 A V H X S+ 0 0 6 -4,-2.9 4,-1.5 1,-0.2 -3,-0.2 0.821 119.8 44.2 -64.0 -28.1 -12.0 14.6 -1.5 34 36 A A H > S+ 0 0 38 -5,-0.5 4,-2.2 2,-0.2 -1,-0.2 0.814 114.2 46.9 -83.8 -38.0 -10.0 12.6 -4.0 35 37 A K H > S+ 0 0 146 -4,-0.3 4,-0.7 2,-0.2 -2,-0.2 0.928 113.9 48.2 -70.8 -44.7 -10.7 14.8 -7.0 36 38 A K H >X S+ 0 0 60 -4,-3.2 4,-2.8 2,-0.2 3,-1.2 0.969 120.1 37.3 -58.7 -58.1 -9.8 18.0 -4.9 37 39 A L H 3X>S+ 0 0 2 -4,-1.5 4,-3.2 -5,-0.3 5,-0.6 0.919 107.1 66.2 -62.2 -43.1 -6.6 16.5 -3.6 38 40 A G H 3<5S+ 0 0 38 -4,-2.2 -1,-0.3 1,-0.2 4,-0.2 0.710 114.2 34.3 -49.6 -20.4 -6.1 14.8 -7.0 39 41 A E H <5S+ 0 0 32 -4,-3.2 3,-1.9 1,-0.3 -1,-0.2 0.955 109.7 51.4 -57.0 -54.6 -1.5 17.3 -5.1 42 44 A N T 34 S+ 0 0 44 -5,-0.1 4,-1.7 0, 0.0 3,-0.2 -0.369 111.5 69.5 105.7 -39.0 5.8 19.3 -7.2 47 49 A D T 4 S+ 0 0 138 1,-0.2 -2,-0.1 2,-0.2 0, 0.0 0.282 97.0 52.6 -85.7 8.9 8.9 20.4 -5.3 48 50 A D T > S+ 0 0 64 2,-0.1 4,-0.7 3,-0.0 -1,-0.2 0.466 102.0 58.7-114.9 -21.7 6.7 20.1 -2.2 49 51 A K H >> S+ 0 0 42 -3,-0.2 4,-2.7 1,-0.2 3,-1.6 0.986 87.3 77.4 -71.8 -61.0 5.7 16.6 -3.1 50 52 A Q H 3X S+ 0 0 99 -4,-1.7 4,-3.0 1,-0.3 5,-0.2 0.596 94.1 47.5 -15.4 -60.1 9.4 15.4 -3.1 51 53 A P H 3> S+ 0 0 72 0, 0.0 4,-0.7 0, 0.0 -1,-0.3 0.942 123.4 33.3 -52.4 -53.2 9.6 15.3 0.8 52 54 A Y H XX S+ 0 0 56 -3,-1.6 4,-2.7 -4,-0.7 3,-0.6 0.916 117.9 57.7 -68.9 -44.4 6.3 13.3 1.1 53 55 A E H 3X S+ 0 0 76 -4,-2.7 4,-3.1 1,-0.2 -3,-0.2 0.935 99.6 54.9 -49.1 -61.0 7.0 11.6 -2.1 54 56 A K H 3X S+ 0 0 166 -4,-3.0 4,-2.4 1,-0.2 -1,-0.2 0.784 112.5 46.0 -48.5 -31.9 10.3 10.1 -1.0 55 57 A K H X S+ 0 0 127 -4,-1.4 4,-1.1 -5,-0.3 3,-1.0 0.951 112.3 46.3 -52.6 -50.5 8.9 -2.2 1.1 63 65 A Y H >X S+ 0 0 45 -4,-2.2 4,-2.2 1,-0.2 3,-0.9 0.918 105.0 60.4 -56.1 -50.2 5.6 -3.6 -0.3 64 66 A E H 3X S+ 0 0 84 -4,-2.9 4,-0.8 1,-0.3 -1,-0.2 0.689 110.6 41.0 -52.7 -25.4 7.2 -4.1 -3.8 65 67 A K H X S+ 0 0 49 -4,-1.1 4,-1.4 1,-0.2 3,-0.9 0.908 116.0 39.2 -62.6 -45.7 4.5 -13.0 -1.7 71 73 A R H 3< S+ 0 0 194 -4,-3.1 -1,-0.2 1,-0.2 -2,-0.2 0.615 115.7 55.2 -80.6 -13.9 3.6 -13.7 -5.3 72 74 A A T 3< S- 0 0 73 -4,-0.6 -1,-0.2 -5,-0.3 -2,-0.2 0.013 142.6 -63.5-107.7 26.4 6.9 -15.4 -5.8 73 75 A K T <4 S+ 0 0 148 -3,-0.9 -3,-0.2 1,-0.1 -2,-0.2 0.891 77.3 152.3 92.3 62.1 6.4 -17.9 -2.9 74 76 A G < + 0 0 25 -4,-1.4 -4,-0.1 1,-0.1 -5,-0.1 -0.445 45.0 97.1-114.4 55.5 6.1 -15.8 0.3 75 77 A K + 0 0 126 -2,-0.2 -1,-0.1 -6,-0.1 -5,-0.1 0.713 64.6 68.1-112.8 -38.3 3.9 -18.2 2.2 76 78 A P S > S- 0 0 91 0, 0.0 3,-1.9 0, 0.0 -2,-0.1 0.250 84.4-159.8 -65.3 14.3 6.5 -20.1 4.4 77 79 A D T 3 - 0 0 126 1,-0.3 -3,-0.1 2,-0.1 -2,-0.0 0.459 55.8 -64.9 -3.0 79.2 6.9 -16.7 6.2 78 80 A A T 3 0 0 114 1,-0.1 -1,-0.3 0, 0.0 -4,-0.0 0.739 360.0 360.0 22.2 60.8 10.3 -17.4 7.8 79 81 A A < 0 0 156 -3,-1.9 -1,-0.1 0, 0.0 -2,-0.1 0.907 360.0 360.0 -96.0 360.0 9.0 -20.3 10.0