==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSFERASE 25-JUL-06 2HTF . COMPND 2 MOLECULE: DNA POLYMERASE MU; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR E.F.DEROSE,M.W.CLARKSON,S.A.GILMORE,D.A.RAMSDEN,G.A.MUELLER, . 105 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6446.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 77 73.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 12 11.4 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 17 16.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 8.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 32 30.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 20 A G 0 0 105 0, 0.0 4,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 86.7 2.8 -12.4 14.6 2 21 A T > + 0 0 100 1,-0.1 3,-0.8 2,-0.1 0, 0.0 0.870 360.0 174.1 44.9 48.0 4.2 -10.6 11.5 3 22 A P T 3 S+ 0 0 116 0, 0.0 2,-1.4 0, 0.0 -1,-0.1 0.906 73.6 53.9 -49.6 -46.9 3.2 -7.2 13.0 4 23 A P T 3 S+ 0 0 87 0, 0.0 2,-1.7 0, 0.0 3,-0.4 -0.304 76.0 177.7 -86.8 52.9 4.9 -5.4 10.1 5 24 A S < + 0 0 21 -2,-1.4 34,-0.3 -3,-0.8 3,-0.1 -0.372 34.0 124.2 -59.5 86.9 3.1 -7.3 7.4 6 25 A T - 0 0 29 -2,-1.7 2,-1.9 32,-0.2 -1,-0.2 0.565 37.1-178.2-118.5 -25.0 4.7 -5.4 4.5 7 26 A R + 0 0 189 -3,-0.4 31,-0.1 29,-0.1 -1,-0.1 -0.363 68.7 41.6 61.9 -82.2 6.1 -8.4 2.6 8 27 A F S S- 0 0 101 -2,-1.9 30,-0.6 3,-0.1 3,-0.4 -0.857 77.3-162.0-103.0 109.7 7.8 -6.5 -0.2 9 28 A P + 0 0 68 0, 0.0 2,-1.5 0, 0.0 29,-0.1 0.109 64.6 63.8 -71.2-167.5 9.6 -3.2 0.8 10 29 A G S S+ 0 0 69 1,-0.1 2,-1.1 27,-0.1 27,-0.1 -0.280 92.2 73.1 84.5 -52.9 10.6 -0.4 -1.5 11 30 A V S S- 0 0 20 -2,-1.5 27,-1.2 -3,-0.4 2,-0.4 -0.696 71.4-172.0 -97.5 81.5 7.0 0.3 -2.4 12 31 A A E -a 38 0A 3 -2,-1.1 36,-1.8 34,-0.3 2,-0.5 -0.620 2.0-166.9 -77.8 125.9 5.8 2.0 0.8 13 32 A I E -a 39 0A 5 25,-2.2 27,-1.1 -2,-0.4 2,-0.5 -0.939 3.3-164.6-119.9 112.0 2.0 2.7 0.8 14 33 A Y E -ab 40 50A 32 35,-2.0 37,-1.5 -2,-0.5 2,-0.4 -0.836 9.1-153.9 -97.7 125.2 0.5 5.0 3.4 15 34 A L E - b 0 51A 5 25,-0.7 2,-1.4 -2,-0.5 37,-0.2 -0.806 16.1-129.3-100.7 137.4 -3.2 4.8 3.9 16 35 A V > - 0 0 1 35,-1.3 3,-1.7 -2,-0.4 37,-0.3 -0.658 25.9-178.5 -86.1 87.8 -5.2 7.8 5.2 17 36 A E G > S+ 0 0 105 -2,-1.4 3,-2.1 1,-0.3 -1,-0.2 0.898 78.8 61.7 -52.8 -47.6 -7.2 6.1 8.0 18 37 A P G 3 S+ 0 0 103 0, 0.0 -1,-0.3 0, 0.0 -2,-0.1 0.693 119.5 29.9 -54.7 -17.4 -9.1 9.4 8.9 19 38 A R G < S+ 0 0 138 -3,-1.7 34,-1.3 2,-0.1 2,-0.3 -0.180 107.7 85.8-135.3 41.1 -10.5 9.2 5.3 20 39 A M S < S- 0 0 18 -3,-2.1 2,-0.1 32,-0.2 -1,-0.0 -0.954 76.2-118.4-147.6 123.2 -10.5 5.4 4.6 21 40 A G > - 0 0 34 -2,-0.3 4,-2.6 1,-0.2 3,-0.2 -0.374 17.5-138.8 -60.7 132.0 -13.2 2.9 5.4 22 41 A R H > S+ 0 0 212 1,-0.2 4,-2.3 2,-0.2 5,-0.2 0.805 103.5 58.5 -61.8 -29.2 -12.0 0.2 7.8 23 42 A S H > S+ 0 0 99 1,-0.2 4,-0.8 2,-0.2 -1,-0.2 0.913 113.1 36.6 -66.5 -43.6 -13.8 -2.3 5.7 24 43 A R H > S+ 0 0 67 -3,-0.2 4,-2.5 2,-0.2 5,-0.2 0.810 114.4 58.2 -78.0 -32.2 -11.9 -1.4 2.6 25 44 A R H X S+ 0 0 58 -4,-2.6 4,-2.3 2,-0.2 -2,-0.2 0.967 108.5 42.9 -61.8 -55.2 -8.7 -0.8 4.5 26 45 A A H X S+ 0 0 62 -4,-2.3 4,-1.9 1,-0.2 5,-0.2 0.801 113.3 56.7 -61.1 -28.8 -8.5 -4.3 5.9 27 46 A F H X S+ 0 0 102 -4,-0.8 4,-0.9 -5,-0.2 -1,-0.2 0.923 114.0 35.5 -68.9 -46.6 -9.5 -5.6 2.5 28 47 A L H X S+ 0 0 2 -4,-2.5 4,-2.5 2,-0.2 -2,-0.2 0.712 115.8 59.5 -80.1 -21.7 -6.6 -3.9 0.7 29 48 A T H X S+ 0 0 20 -4,-2.3 4,-2.2 -5,-0.2 5,-0.2 0.995 106.5 41.2 -69.0 -65.2 -4.3 -4.6 3.6 30 49 A G H X S+ 0 0 38 -4,-1.9 4,-0.8 1,-0.2 -1,-0.2 0.799 122.1 45.6 -53.5 -31.0 -4.5 -8.4 3.8 31 50 A L H >X S+ 0 0 67 -4,-0.9 4,-1.9 -5,-0.2 3,-1.1 0.970 109.7 49.0 -77.3 -59.0 -4.3 -8.4 0.0 32 51 A A H 3X>S+ 0 0 2 -4,-2.5 5,-2.4 1,-0.3 4,-2.2 0.801 111.4 54.4 -51.0 -30.9 -1.5 -6.0 -0.6 33 52 A R H 3<5S+ 0 0 91 -4,-2.2 -1,-0.3 1,-0.2 -2,-0.2 0.844 113.1 40.3 -72.5 -34.8 0.4 -7.9 2.0 34 53 A S H <<5S+ 0 0 102 -3,-1.1 -2,-0.2 -4,-0.8 -1,-0.2 0.592 116.5 52.5 -88.4 -13.4 -0.1 -11.2 0.2 35 54 A K H <5S- 0 0 99 -4,-1.9 -2,-0.2 2,-0.1 -3,-0.2 0.910 123.6 -88.5 -86.9 -50.8 0.4 -9.5 -3.2 36 55 A G T <5S+ 0 0 10 -4,-2.2 2,-0.4 1,-0.2 -3,-0.2 0.508 78.6 125.6 139.9 47.3 3.8 -7.8 -2.7 37 56 A F < - 0 0 1 -5,-2.4 2,-0.5 -6,-0.1 -1,-0.2 -0.991 54.2-125.5-133.1 138.6 3.3 -4.3 -1.2 38 57 A R E -a 12 0A 62 -27,-1.2 -25,-2.2 -30,-0.6 2,-1.2 -0.697 19.3-141.9 -84.1 123.4 4.7 -2.7 1.9 39 58 A V E -a 13 0A 21 -2,-0.5 2,-0.5 -34,-0.3 -25,-0.2 -0.718 16.9-156.7 -88.5 95.6 2.0 -1.2 4.1 40 59 A L E +a 14 0A 6 -2,-1.2 -25,-0.7 -27,-1.1 2,-0.2 -0.606 21.0 171.4 -75.8 121.2 3.5 2.0 5.4 41 60 A D + 0 0 102 -2,-0.5 6,-0.1 -27,-0.2 -27,-0.0 -0.721 33.2 33.0-123.8 174.7 1.9 3.1 8.7 42 61 A A S S- 0 0 60 -2,-0.2 2,-2.1 1,-0.1 0, 0.0 0.242 108.0 -46.3 63.0 166.4 2.5 5.7 11.4 43 62 A C S S+ 0 0 123 2,-0.1 2,-0.4 3,-0.0 -1,-0.1 -0.461 86.5 142.8 -70.4 82.0 3.9 9.2 10.8 44 63 A S > - 0 0 44 -2,-2.1 3,-1.0 1,-0.1 27,-0.1 -0.990 46.4-156.5-129.3 128.6 6.8 8.2 8.5 45 64 A S T 3 S+ 0 0 40 -2,-0.4 -1,-0.1 1,-0.2 -2,-0.1 0.542 81.5 91.1 -77.1 -6.9 8.0 10.1 5.5 46 65 A E T 3 + 0 0 115 2,-0.0 -34,-0.3 32,-0.0 -1,-0.2 0.664 63.9 109.8 -62.5 -14.6 9.5 6.8 4.1 47 66 A A < + 0 0 5 -3,-1.0 -34,-0.2 1,-0.1 3,-0.1 -0.287 43.7 179.7 -62.9 146.9 6.1 6.4 2.4 48 67 A T + 0 0 56 -36,-1.8 31,-0.6 1,-0.2 2,-0.3 0.222 67.6 53.4-132.2 9.2 6.1 6.8 -1.4 49 68 A H E - c 0 79A 25 -37,-0.5 -35,-2.0 29,-0.1 2,-0.9 -0.788 58.4-170.6-152.0 102.9 2.4 6.2 -2.1 50 69 A V E +bc 14 80A 2 29,-2.2 31,-2.2 -2,-0.3 2,-0.4 -0.817 15.9 175.9 -98.8 101.5 -0.4 8.1 -0.4 51 70 A V E +bc 15 81A 0 -37,-1.5 -35,-1.3 -2,-0.9 2,-0.3 -0.889 0.8 175.5-109.1 134.2 -3.7 6.5 -1.3 52 71 A M E - c 0 82A 3 29,-0.6 31,-1.5 -2,-0.4 3,-0.4 -0.971 26.3-119.7-138.2 152.8 -7.1 7.7 0.2 53 72 A E S S+ 0 0 43 -34,-1.3 29,-0.0 -37,-0.3 -2,-0.0 -0.691 88.6 2.0 -93.5 142.6 -10.7 6.8 -0.3 54 73 A E S S+ 0 0 166 -2,-0.3 2,-0.4 1,-0.2 -1,-0.2 0.940 93.1 142.0 48.1 59.9 -13.4 9.3 -1.4 55 74 A T - 0 0 16 -3,-0.4 -1,-0.2 5,-0.0 -3,-0.1 -0.994 37.5-152.3-135.6 130.8 -10.9 12.2 -1.8 56 75 A S > - 0 0 66 -2,-0.4 4,-1.6 26,-0.0 5,-0.2 -0.130 38.7 -87.8 -86.0-173.1 -10.8 14.9 -4.5 57 76 A A H >> S+ 0 0 29 2,-0.2 4,-2.2 1,-0.2 3,-1.1 0.997 126.4 32.3 -60.6 -73.1 -7.7 16.8 -5.8 58 77 A E H 3> S+ 0 0 118 1,-0.3 4,-2.4 2,-0.2 5,-0.2 0.750 113.7 66.6 -58.2 -23.6 -7.5 19.7 -3.3 59 78 A E H 3> S+ 0 0 89 1,-0.2 4,-0.8 2,-0.2 -1,-0.3 0.898 109.4 34.5 -64.6 -41.1 -8.9 17.3 -0.7 60 79 A A H X S+ 0 0 23 -4,-2.0 4,-1.0 2,-0.2 3,-0.8 0.922 111.0 47.6 -69.9 -45.9 1.6 15.5 6.3 68 87 A M H 3< S+ 0 0 48 -4,-2.6 -2,-0.2 1,-0.2 -1,-0.2 0.808 105.1 61.8 -64.9 -29.9 4.6 17.7 5.4 69 88 A A H 3< S+ 0 0 84 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.790 106.8 44.7 -66.2 -28.1 3.7 19.8 8.5 70 89 A A H << S+ 0 0 81 -3,-0.8 -1,-0.2 -4,-0.7 -2,-0.2 0.657 107.8 72.4 -88.2 -19.1 4.4 16.8 10.6 71 90 A A S < S- 0 0 11 -4,-1.0 3,-0.1 1,-0.1 -27,-0.0 -0.691 99.4 -90.3 -98.0 150.7 7.6 15.9 8.7 72 91 A P > - 0 0 88 0, 0.0 3,-1.9 0, 0.0 2,-0.5 -0.349 51.2 -99.4 -59.7 131.1 10.9 17.9 9.0 73 92 A P T 3 S+ 0 0 140 0, 0.0 3,-0.1 0, 0.0 -4,-0.0 -0.339 112.3 44.2 -55.7 106.3 11.1 20.7 6.3 74 93 A G T 3 S+ 0 0 81 -2,-0.5 2,-0.4 1,-0.4 -6,-0.0 0.207 75.7 126.0 141.0 -12.5 13.2 19.1 3.6 75 94 A C < - 0 0 41 -3,-1.9 -1,-0.4 -7,-0.1 -4,-0.1 -0.634 66.8-114.6 -78.9 125.3 11.7 15.7 3.3 76 95 A T - 0 0 125 -2,-0.4 -1,-0.1 1,-0.1 0, 0.0 -0.396 34.3-118.0 -60.7 126.1 10.6 14.8 -0.3 77 96 A P - 0 0 69 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.383 28.2-118.5 -68.1 142.0 6.8 14.4 -0.4 78 97 A P - 0 0 15 0, 0.0 2,-1.1 0, 0.0 -30,-0.2 -0.012 45.5 -70.0 -69.5-179.5 5.4 11.0 -1.4 79 98 A A E -c 49 0A 20 -31,-0.6 -29,-2.2 1,-0.0 2,-0.5 -0.646 49.9-150.8 -79.3 100.0 3.3 10.3 -4.5 80 99 A L E +c 50 0A 2 -2,-1.1 25,-0.6 -31,-0.2 2,-0.2 -0.609 41.4 125.5 -74.0 118.0 -0.1 11.9 -3.7 81 100 A L E -c 51 0A 2 -31,-2.2 -29,-0.6 -2,-0.5 22,-0.2 -0.860 55.5 -73.9-155.6-171.5 -2.8 10.0 -5.5 82 101 A D E > -c 52 0A 34 20,-1.8 3,-1.6 -2,-0.2 4,-0.4 -0.549 38.6-112.9 -96.3 162.1 -6.1 8.0 -5.2 83 102 A I T 3> S+ 0 0 2 -31,-1.5 4,-1.9 1,-0.3 3,-0.4 0.631 104.8 85.5 -66.9 -13.1 -6.7 4.6 -3.8 84 103 A S H 3> S+ 0 0 27 1,-0.2 4,-1.5 -32,-0.2 -1,-0.3 0.731 82.0 61.9 -61.3 -21.4 -7.6 3.5 -7.3 85 104 A W H <> S+ 0 0 2 -3,-1.6 4,-1.9 2,-0.2 11,-0.3 0.930 104.3 44.5 -70.1 -46.8 -3.9 2.9 -7.8 86 105 A L H > S+ 0 0 2 -3,-0.4 4,-2.1 -4,-0.4 5,-0.2 0.938 109.4 55.7 -63.9 -49.4 -3.6 0.2 -5.1 87 106 A T H X S+ 0 0 46 -4,-1.9 4,-1.5 1,-0.2 3,-0.4 0.928 113.4 40.3 -49.1 -54.4 -6.8 -1.6 -6.2 88 107 A E H X S+ 0 0 105 -4,-1.5 4,-1.9 1,-0.2 -1,-0.2 0.854 111.2 58.7 -64.6 -35.1 -5.5 -2.1 -9.8 89 108 A S H X>S+ 0 0 0 -4,-1.9 5,-1.3 1,-0.2 4,-1.0 0.825 106.1 49.4 -63.2 -31.2 -2.0 -2.8 -8.4 90 109 A L H <5S+ 0 0 10 -4,-2.1 -1,-0.2 -3,-0.4 -2,-0.2 0.838 106.8 55.4 -75.9 -34.6 -3.6 -5.7 -6.5 91 110 A G H <5S+ 0 0 72 -4,-1.5 -2,-0.2 -5,-0.2 -1,-0.2 0.886 115.2 37.2 -65.3 -39.7 -5.3 -7.0 -9.6 92 111 A A H <5S- 0 0 60 -4,-1.9 -1,-0.2 2,-0.2 -2,-0.2 0.675 105.5-129.9 -85.0 -19.4 -2.1 -7.2 -11.5 93 112 A G T <5S+ 0 0 33 -4,-1.0 -3,-0.2 -5,-0.2 -4,-0.1 0.717 78.0 77.1 77.0 21.5 -0.2 -8.4 -8.5 94 113 A Q S - 0 0 120 -2,-0.1 4,-1.9 1,-0.1 3,-0.2 -0.554 34.2-100.8-103.2 171.0 -0.4 7.8 -14.3 100 119 A C T 4 S+ 0 0 107 1,-0.2 5,-0.1 2,-0.2 -1,-0.1 0.746 118.1 69.2 -61.7 -21.9 -1.5 11.4 -14.1 101 120 A R T 4 S+ 0 0 197 1,-0.2 3,-0.4 2,-0.1 -1,-0.2 0.982 106.9 31.7 -59.5 -62.4 -5.0 9.9 -13.9 102 121 A H T 4 S+ 0 0 28 1,-0.3 -20,-1.8 -3,-0.2 2,-1.0 0.782 112.6 67.3 -67.8 -27.7 -4.6 8.4 -10.4 103 122 A R < + 0 0 118 -4,-1.9 -1,-0.3 -22,-0.2 -22,-0.1 -0.305 61.2 150.2 -88.6 51.1 -2.2 11.2 -9.5 104 123 A L 0 0 73 -2,-1.0 -1,-0.2 -3,-0.4 -23,-0.1 0.146 360.0 360.0 -72.2 22.9 -5.1 13.7 -9.7 105 124 A E 0 0 98 -25,-0.6 -48,-0.1 -2,-0.1 -47,-0.1 -0.478 360.0 360.0 -62.9 360.0 -3.3 15.8 -7.0