==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/DNA 08-DEC-92 1HVN . COMPND 2 MOLECULE: DNA (5'-D(P*AP*CP*GP*CP*C)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR T.L.SOUTH,M.F.SUMMERS . 18 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1924.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 5 27.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 11.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 E V 0 0 165 0, 0.0 9,-1.7 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 159.4 6.6 -4.4 7.2 2 2 E K B -A 9 0A 109 7,-0.2 7,-0.3 8,-0.1 2,-0.2 -0.918 360.0-116.9-116.8 142.3 4.4 -1.7 5.9 3 3 E C > - 0 0 1 5,-2.1 4,-0.8 -2,-0.4 9,-0.1 -0.439 21.2-167.1 -61.3 148.3 3.4 -0.1 2.6 4 4 E F T 4 S+ 0 0 159 2,-0.2 -1,-0.1 -2,-0.2 8,-0.1 0.735 78.7 71.3-125.9 -11.2 4.4 3.5 2.5 5 5 E N T 4 S+ 0 0 89 1,-0.1 -1,-0.1 3,-0.1 8,-0.1 0.976 130.7 1.0 -59.3 -44.1 2.5 4.6 -0.6 6 6 E C T 4 S- 0 0 61 2,-0.1 -2,-0.2 0, 0.0 -1,-0.1 0.806 96.6-117.6-112.3 -51.0 -0.6 4.1 1.5 7 7 E G < + 0 0 49 -4,-0.8 -3,-0.2 1,-0.3 2,-0.1 0.571 68.1 129.2 118.0 7.8 0.5 3.1 5.0 8 8 E K - 0 0 150 1,-0.1 -5,-2.1 3,-0.0 2,-0.5 -0.384 60.9 -94.4 -90.2 169.2 -1.1 -0.3 5.0 9 9 E E B S+A 2 0A 167 -7,-0.3 -7,-0.2 1,-0.1 2,-0.2 -0.795 87.3 12.1 -90.4 138.6 0.5 -3.6 5.9 10 10 E G S S+ 0 0 55 -9,-1.7 -1,-0.1 -2,-0.5 -8,-0.1 -0.356 96.6 75.1 117.8 -65.3 2.1 -6.1 3.6 11 11 E H S S- 0 0 77 -2,-0.2 2,-0.4 1,-0.1 -1,-0.2 -0.266 72.6 -97.6-100.6 172.3 2.5 -4.8 0.1 12 12 E I > - 0 0 99 -9,-0.1 3,-1.4 1,-0.1 -9,-0.1 -0.747 15.6-128.8 -87.2 155.8 4.8 -2.3 -1.7 13 13 E A G > S+ 0 0 45 -2,-0.4 3,-2.4 1,-0.3 -1,-0.1 0.915 109.8 59.6 -48.3 -52.5 4.5 1.3 -2.6 14 14 E R G 3 S+ 0 0 228 1,-0.3 -1,-0.3 2,-0.0 -3,-0.0 0.619 113.5 35.9 -61.4 -24.2 5.5 0.4 -6.2 15 15 E N G < S+ 0 0 106 -3,-1.4 -1,-0.3 0, 0.0 -2,-0.2 -0.003 94.7 112.2-115.9 11.8 2.5 -1.9 -6.5 16 16 E C < - 0 0 26 -3,-2.4 -3,-0.1 1,-0.1 -4,-0.1 0.366 43.8-169.4 -65.2-147.9 0.0 0.2 -4.5 17 17 E R 0 0 220 0, 0.0 -1,-0.1 0, 0.0 -4,-0.0 0.069 360.0 360.0 177.7 -38.4 -3.0 1.9 -6.0 18 18 E A 0 0 118 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 0.338 360.0 360.0 61.6 360.0 -4.3 4.2 -3.2