==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/DNA 08-DEC-92 1HVO . COMPND 2 MOLECULE: DNA (5'-D(P*AP*CP*GP*CP*C)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR T.L.SOUTH,M.F.SUMMERS . 18 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1847.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 6 33.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 11.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 E V 0 0 162 0, 0.0 9,-1.7 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 175.6 5.9 -5.0 6.6 2 2 E K B -A 9 0A 111 7,-0.2 7,-0.3 8,-0.1 2,-0.2 -0.832 360.0-116.8-105.1 147.3 3.8 -2.1 5.3 3 3 E C > - 0 0 2 5,-1.7 4,-1.0 -2,-0.4 9,-0.1 -0.450 20.7-162.8 -60.0 142.0 3.2 -0.4 2.0 4 4 E F T 4 S+ 0 0 175 -2,-0.2 -1,-0.1 2,-0.2 8,-0.1 0.603 80.7 73.2-111.5 -10.2 4.2 3.3 2.4 5 5 E N T 4 S+ 0 0 89 1,-0.1 -1,-0.1 3,-0.1 7,-0.0 0.976 128.4 0.2 -61.8 -44.5 2.3 4.5 -0.7 6 6 E C T 4 S- 0 0 52 2,-0.1 -2,-0.2 12,-0.0 -1,-0.1 0.694 97.4-117.2-113.6 -39.0 -0.9 4.1 1.4 7 7 E G S < S+ 0 0 40 -4,-1.0 -3,-0.2 1,-0.3 2,-0.1 0.523 70.1 130.1 101.5 16.3 0.3 2.8 4.7 8 8 E K - 0 0 148 1,-0.1 -5,-1.7 -6,-0.1 2,-0.5 -0.270 58.8 -96.1 -94.9 172.1 -1.5 -0.5 4.5 9 9 E E B S+A 2 0A 131 -7,-0.3 -7,-0.2 1,-0.2 3,-0.1 -0.847 85.3 12.6 -99.4 137.2 0.1 -3.9 5.1 10 10 E G S S+ 0 0 51 -9,-1.7 2,-0.3 -2,-0.5 -1,-0.2 0.813 97.3 80.5 76.8 43.8 1.5 -6.5 2.7 11 11 E H S S- 0 0 88 -3,-0.3 2,-0.4 -10,-0.2 -1,-0.3 -0.922 71.6 -98.7-162.6-176.6 1.9 -4.8 -0.6 12 12 E I > - 0 0 113 -2,-0.3 3,-2.0 -9,-0.1 -9,-0.1 -0.902 15.0-134.1-118.6 145.1 4.2 -2.5 -2.5 13 13 E A G > S+ 0 0 38 -2,-0.4 3,-1.8 1,-0.3 -1,-0.1 0.793 98.7 65.0 -64.5 -37.3 4.2 1.2 -3.2 14 14 E R G 3 S+ 0 0 195 1,-0.3 -1,-0.3 -9,-0.0 0, 0.0 0.636 110.8 37.5 -61.9 -18.3 5.0 1.1 -6.8 15 15 E N G < S+ 0 0 94 -3,-2.0 2,-0.6 0, 0.0 -1,-0.3 -0.112 87.1 145.6-120.5 15.3 1.8 -0.7 -7.6 16 16 E C < - 0 0 28 -3,-1.8 -3,-0.1 1,-0.2 -5,-0.0 -0.671 33.2-176.6 -80.4 126.7 -0.5 1.0 -5.2 17 17 E R 0 0 228 -2,-0.6 -1,-0.2 1,-0.2 -4,-0.0 0.868 360.0 360.0 -67.2 -47.8 -4.2 1.7 -5.9 18 18 E A 0 0 102 0, 0.0 -1,-0.2 0, 0.0 -12,-0.0 -0.320 360.0 360.0 61.5 360.0 -4.5 3.5 -2.6