==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=1-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 27-JUL-06 2HV4 . COMPND 2 MOLECULE: CYTOCHROME C ISO-1; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR M.ASSFALG,I.BERTINI,R.DEL CONTE,P.TURANO . 108 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6873.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 65 60.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 33 30.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -5 A T 0 0 164 0, 0.0 2,-0.2 0, 0.0 66,-0.0 0.000 360.0 360.0 360.0 118.2 -10.7 -8.7 13.0 2 -4 A E - 0 0 112 2,-0.1 2,-2.5 0, 0.0 0, 0.0 -0.686 360.0-145.1-160.3 91.5 -12.4 -10.9 10.3 3 -3 A F - 0 0 86 -2,-0.2 2,-1.2 1,-0.0 64,-0.0 -0.448 20.6-176.7 -63.7 73.8 -11.0 -10.6 6.8 4 -2 A K - 0 0 135 -2,-2.5 93,-0.1 1,-0.1 -2,-0.1 -0.702 33.3-125.4 -68.4 93.8 -14.3 -11.1 5.0 5 -1 A A - 0 0 68 -2,-1.2 93,-0.2 1,-0.1 92,-0.1 -0.078 27.8-156.6 -52.4 148.1 -12.7 -11.1 1.5 6 1 A G - 0 0 33 91,-0.7 2,-0.5 92,-0.1 92,-0.1 0.100 30.2 -69.0-103.6-148.7 -14.0 -8.6 -1.1 7 2 A S >> - 0 0 54 1,-0.1 4,-2.6 -2,-0.0 3,-1.3 -0.967 27.4-140.9-118.8 119.7 -14.1 -8.3 -4.9 8 3 A A H 3> S+ 0 0 33 -2,-0.5 4,-0.9 1,-0.3 -1,-0.1 0.689 106.0 51.6 -53.8 -18.1 -10.8 -7.7 -6.8 9 4 A K H 3> S+ 0 0 166 2,-0.2 4,-1.9 3,-0.1 -1,-0.3 0.746 108.2 48.8 -93.0 -22.8 -12.8 -5.4 -9.2 10 5 A K H <> S+ 0 0 108 -3,-1.3 4,-2.4 2,-0.2 -2,-0.2 0.914 112.0 49.9 -70.8 -46.7 -14.3 -3.3 -6.4 11 6 A G H X S+ 0 0 0 -4,-2.6 4,-3.0 87,-0.5 -2,-0.2 0.881 110.2 52.7 -57.8 -36.3 -10.8 -3.0 -4.9 12 7 A A H X S+ 0 0 26 -4,-0.9 4,-2.5 -5,-0.3 -2,-0.2 0.952 109.7 45.0 -61.3 -55.4 -9.7 -1.9 -8.4 13 8 A T H < S+ 0 0 91 -4,-1.9 4,-0.4 2,-0.2 -2,-0.2 0.844 117.0 48.3 -62.9 -29.0 -12.4 0.9 -8.7 14 9 A L H >< S+ 0 0 26 -4,-2.4 3,-2.2 2,-0.2 5,-0.2 0.990 111.7 47.3 -66.3 -63.5 -11.4 2.0 -5.1 15 10 A F H >X>S+ 0 0 2 -4,-3.0 4,-2.4 1,-0.3 5,-2.3 0.849 103.4 64.3 -44.4 -43.8 -7.6 1.9 -5.8 16 11 A K T 3<5S+ 0 0 143 -4,-2.5 -1,-0.3 1,-0.3 -2,-0.2 0.692 116.4 28.3 -61.5 -20.4 -8.2 3.9 -9.0 17 12 A T T <45S+ 0 0 96 -3,-2.2 -1,-0.3 -4,-0.4 -2,-0.2 -0.290 128.8 40.3-134.4 42.7 -9.6 6.9 -6.9 18 13 A R T <45S+ 0 0 87 -3,-1.7 -3,-0.2 0, 0.0 -2,-0.2 0.368 130.7 5.3-141.6 -43.2 -7.6 6.3 -3.6 19 14 A C T >X5S+ 0 0 25 -4,-2.4 3,-2.4 -5,-0.2 4,-2.2 0.641 103.3 82.9-128.6 -30.8 -4.0 5.3 -4.4 20 15 A L T 34 S- 0 0 147 1,-0.1 3,-1.9 4,-0.1 12,-0.2 -0.724 87.0-118.0 -77.8 144.7 1.4 -3.3 -12.8 27 22 A K T 3 S+ 0 0 125 -2,-0.3 -1,-0.1 1,-0.3 9,-0.1 0.699 114.4 53.3 -71.4 -16.2 5.1 -4.4 -13.1 28 23 A G T 3 S+ 0 0 73 2,-0.1 -1,-0.3 0, 0.0 -4,-0.0 0.559 82.7 124.6 -80.7 -9.8 5.9 -1.8 -15.9 29 24 A G < - 0 0 6 -3,-1.9 -5,-0.2 1,-0.1 9,-0.1 -0.341 59.5-134.5 -61.4 113.2 4.5 0.9 -13.5 30 25 A P - 0 0 98 0, 0.0 2,-0.1 0, 0.0 -1,-0.1 -0.319 23.3-107.6 -63.3 146.4 7.1 3.7 -12.9 31 26 A H + 0 0 59 1,-0.1 -8,-0.1 18,-0.1 5,-0.1 -0.447 52.2 154.3 -63.3 148.1 7.6 4.9 -9.4 32 27 A K - 0 0 164 2,-3.0 -1,-0.1 -10,-0.4 -9,-0.1 -0.034 67.9 -6.0-142.2-117.6 6.2 8.5 -8.8 33 28 A V S S+ 0 0 93 -11,-0.2 -10,-0.2 -12,-0.2 -11,-0.1 0.880 143.4 5.4 -60.2 -36.8 4.9 10.2 -5.6 34 29 A G S S- 0 0 9 -12,-2.2 -2,-3.0 1,-0.2 -10,-0.0 -0.729 97.5 -83.0-127.9-176.8 5.5 6.8 -4.0 35 30 A P - 0 0 15 0, 0.0 -11,-0.9 0, 0.0 -1,-0.2 0.026 52.3 -83.0 -69.3-178.0 7.1 3.4 -5.2 36 31 A N B -a 24 0A 18 -13,-0.2 -11,-0.2 1,-0.1 -5,-0.1 -0.520 28.9-151.8 -74.9 161.9 5.4 0.6 -7.2 37 32 A L > + 0 0 26 -13,-2.3 3,-2.2 -2,-0.2 2,-1.1 0.425 56.7 119.2-114.7 -9.3 3.3 -2.0 -5.1 38 33 A H T 3 S+ 0 0 67 -14,-0.3 69,-0.1 1,-0.3 -2,-0.1 -0.481 90.4 10.6 -66.2 92.4 3.8 -5.1 -7.4 39 34 A G T 3 S+ 0 0 35 -2,-1.1 -1,-0.3 -14,-0.1 4,-0.1 0.526 86.4 121.2 107.7 11.6 5.6 -7.5 -5.0 40 35 A I X + 0 0 22 -3,-2.2 3,-2.6 2,-0.1 24,-0.4 0.901 51.4 94.1 -65.2 -39.6 5.2 -5.6 -1.6 41 36 A F T 3 S+ 0 0 41 -4,-0.4 24,-0.2 1,-0.3 3,-0.1 -0.388 100.5 12.5 -60.6 111.8 3.3 -8.7 -0.2 42 37 A G T 3 S+ 0 0 55 22,-2.7 -1,-0.3 1,-0.5 2,-0.1 0.208 110.8 102.7 97.4 -9.1 6.1 -10.8 1.6 43 38 A R S < S- 0 0 133 -3,-2.6 21,-2.4 21,-0.2 -1,-0.5 -0.458 74.5-111.6 -84.1 168.5 8.7 -7.9 1.3 44 39 A H B -B 63 0B 81 19,-0.3 3,-0.3 -2,-0.1 19,-0.2 -0.726 46.1 -82.4 -90.1 155.8 9.7 -5.6 4.2 45 40 A S S S+ 0 0 0 17,-1.3 16,-0.2 -2,-0.3 -1,-0.1 -0.302 112.6 31.7 -49.4 132.6 8.9 -1.9 4.2 46 41 A G S S+ 0 0 21 15,-0.1 -1,-0.2 14,-0.1 7,-0.1 0.860 80.5 112.8 91.0 38.4 11.3 0.1 2.1 47 42 A Q + 0 0 96 -3,-0.3 -2,-0.1 5,-0.1 5,-0.1 0.149 29.1 137.6-135.3 23.6 12.5 -2.3 -0.8 48 43 A A S > S- 0 0 25 3,-0.2 2,-1.9 1,-0.1 3,-0.8 -0.203 74.6 -69.7 -64.6 165.1 11.2 -1.1 -4.3 49 44 A E T 3 S- 0 0 154 1,-0.3 -1,-0.1 -13,-0.0 -18,-0.1 -0.307 105.5 -36.7 -72.7 76.8 13.6 -1.2 -7.3 50 45 A G T 3 S+ 0 0 82 -2,-1.9 2,-0.4 1,-0.2 -1,-0.3 0.625 99.4 142.5 88.0 16.0 16.2 1.6 -6.5 51 46 A Y < - 0 0 62 -3,-0.8 2,-0.8 1,-0.0 -1,-0.2 -0.764 49.5-127.2-101.5 131.7 13.7 4.0 -4.8 52 47 A S - 0 0 99 -2,-0.4 -5,-0.1 1,-0.1 -1,-0.0 -0.671 29.5-179.8 -87.0 105.7 14.5 6.2 -1.8 53 48 A Y - 0 0 41 -2,-0.8 2,-0.3 1,-0.1 -1,-0.1 0.323 34.6 -80.0 -70.8-162.5 12.0 5.9 1.2 54 49 A T > - 0 0 28 1,-0.1 4,-2.4 0, 0.0 5,-0.2 -0.808 30.9-112.7-100.9 161.6 12.1 7.8 4.6 55 50 A D H > S+ 0 0 102 -2,-0.3 4,-2.8 1,-0.2 5,-0.2 0.915 121.5 50.4 -52.0 -45.6 14.2 7.1 7.7 56 51 A A H > S+ 0 0 24 2,-0.2 4,-0.6 1,-0.2 -1,-0.2 0.877 108.6 49.6 -62.7 -44.1 10.9 6.2 9.5 57 52 A N H > S+ 0 0 12 2,-0.2 4,-0.9 1,-0.1 3,-0.3 0.912 115.6 45.3 -64.3 -38.3 9.7 3.8 6.7 58 53 A I H >< S+ 0 0 83 -4,-2.4 3,-1.7 1,-0.2 -2,-0.2 0.991 110.6 50.2 -66.2 -60.3 13.2 2.0 6.8 59 54 A K H 3< S+ 0 0 155 -4,-2.8 -1,-0.2 1,-0.3 -2,-0.2 0.546 109.1 57.0 -59.2 -7.6 13.4 1.8 10.7 60 55 A K H 3< S+ 0 0 65 -4,-0.6 -1,-0.3 -3,-0.3 -2,-0.2 0.798 73.1 172.8 -81.4 -39.5 9.8 0.3 10.5 61 56 A N << - 0 0 82 -3,-1.7 2,-0.3 -4,-0.9 -3,-0.1 0.708 16.2-177.7 17.8 59.7 10.8 -2.6 8.1 62 57 A V - 0 0 13 -5,-0.3 -17,-1.3 -18,-0.1 2,-0.8 -0.612 32.7-120.9 -78.9 131.4 7.3 -4.3 8.4 63 58 A L B -B 44 0B 85 -2,-0.3 2,-0.6 -19,-0.2 -19,-0.3 -0.650 34.2-128.0 -67.7 105.5 6.8 -7.6 6.6 64 59 A W + 0 0 16 -21,-2.4 -22,-2.7 -2,-0.8 2,-0.2 -0.513 45.9 157.7 -65.3 112.0 3.9 -6.5 4.3 65 60 A D > - 0 0 63 -2,-0.6 4,-2.9 -24,-0.2 5,-0.4 -0.767 57.2 -95.5-129.5 167.9 1.1 -9.1 4.9 66 61 A E H > S+ 0 0 88 -2,-0.2 4,-1.2 2,-0.2 -1,-0.1 0.968 128.0 29.7 -51.2 -58.0 -2.7 -9.3 4.4 67 62 A N H > S+ 0 0 98 2,-0.2 4,-1.8 1,-0.2 3,-0.3 0.965 120.6 53.4 -67.4 -53.2 -3.3 -8.3 8.1 68 63 A N H > S+ 0 0 31 1,-0.2 4,-1.6 2,-0.2 -2,-0.2 0.832 110.5 45.4 -58.0 -39.0 -0.1 -6.2 8.6 69 64 A M H X S+ 0 0 12 -4,-2.9 4,-2.3 2,-0.2 -1,-0.2 0.842 108.6 57.5 -76.5 -29.1 -0.8 -3.9 5.5 70 65 A S H X S+ 0 0 20 -4,-1.2 4,-0.9 -5,-0.4 -2,-0.2 0.886 105.5 51.4 -62.9 -38.2 -4.5 -3.4 6.6 71 66 A E H >X S+ 0 0 97 -4,-1.8 3,-1.5 2,-0.2 4,-1.1 0.987 110.4 48.1 -57.7 -59.8 -3.2 -2.1 10.0 72 67 A Y H 3< S+ 0 0 21 -4,-1.6 3,-0.2 1,-0.3 7,-0.2 0.837 108.4 54.3 -48.9 -44.4 -0.9 0.4 8.2 73 68 A L H 3< S+ 0 0 14 -4,-2.3 17,-2.3 1,-0.2 -1,-0.3 0.731 98.1 65.0 -67.5 -21.1 -3.8 1.6 5.9 74 69 A T H << S- 0 0 61 -3,-1.5 -1,-0.2 -4,-0.9 -2,-0.2 0.922 132.4 -7.1 -69.4 -43.1 -6.0 2.3 9.0 75 70 A N X + 0 0 80 -4,-1.1 4,-2.0 -3,-0.2 3,-0.4 -0.545 68.1 172.6-148.9 85.9 -3.6 5.1 10.1 76 71 A P H > S+ 0 0 0 0, 0.0 4,-2.1 0, 0.0 7,-0.2 0.859 80.5 59.4 -64.1 -33.4 -0.4 5.3 8.0 77 72 A K H 4 S+ 0 0 92 11,-0.4 6,-0.2 1,-0.2 5,-0.2 0.878 110.6 40.2 -61.0 -44.6 0.7 8.5 9.8 78 73 A K H 4 S+ 0 0 165 -3,-0.4 -1,-0.2 1,-0.2 -6,-0.1 0.846 115.1 52.6 -72.4 -36.2 0.7 6.8 13.3 79 74 A Y H < S+ 0 0 41 -4,-2.0 -2,-0.2 1,-0.3 -1,-0.2 0.800 126.3 22.0 -70.4 -32.7 2.3 3.6 11.9 80 75 A I S >< S- 0 0 1 -4,-2.1 3,-2.5 -5,-0.2 2,-0.7 -0.751 82.6-156.9-134.4 79.7 5.2 5.4 10.3 81 76 A P T 3 S+ 0 0 103 0, 0.0 -3,-0.1 0, 0.0 -4,-0.1 -0.506 86.9 23.7 -68.0 105.9 5.6 8.8 12.1 82 77 A G T 3 S+ 0 0 64 -2,-0.7 -26,-0.1 1,-0.2 -25,-0.1 0.274 90.2 154.1 114.1 -3.6 7.4 10.9 9.4 83 78 A T < - 0 0 22 -3,-2.5 -1,-0.2 -6,-0.2 -3,-0.0 -0.190 52.6-132.8 -51.3 142.0 6.3 8.9 6.3 84 79 A K S S+ 0 0 121 1,-0.1 2,-2.2 2,-0.0 -1,-0.1 0.583 81.2 109.3 -66.1 -11.5 6.0 10.5 2.9 85 80 A M + 0 0 33 1,-0.2 3,-0.4 -5,-0.1 -1,-0.1 -0.430 43.2 172.4 -71.2 79.0 2.5 8.7 2.7 86 81 A A + 0 0 80 -2,-2.2 -1,-0.2 1,-0.2 -2,-0.0 0.638 45.1 103.8 -65.9 -12.4 0.6 12.0 3.0 87 82 A F S S- 0 0 91 -3,-0.1 -1,-0.2 1,-0.1 -2,-0.0 0.805 73.1-136.6 -39.5 -75.9 -2.7 10.2 2.3 88 83 A G - 0 0 36 -3,-0.4 -11,-0.4 2,-0.0 -1,-0.1 -0.269 43.7 -74.4 140.1 -56.3 -4.5 9.9 5.8 89 84 A G - 0 0 15 -14,-0.2 2,-1.5 -13,-0.1 -15,-0.2 -0.132 31.4-101.8 133.7 137.8 -6.0 6.3 6.2 90 85 A L - 0 0 18 -17,-2.3 6,-0.2 1,-0.2 -15,-0.1 -0.611 36.4-174.7 -84.3 86.1 -8.9 4.1 5.0 91 86 A K + 0 0 190 -2,-1.5 2,-0.4 4,-0.1 -1,-0.2 0.842 61.3 75.2 -43.9 -54.5 -11.2 4.3 8.1 92 87 A K > - 0 0 135 1,-0.1 4,-1.6 2,-0.0 5,-0.1 -0.586 66.1-156.3 -75.9 122.7 -13.8 1.7 6.8 93 88 A E H > S+ 0 0 83 -2,-0.4 4,-2.9 2,-0.2 5,-0.2 0.859 91.3 55.4 -63.6 -40.8 -12.7 -1.9 7.1 94 89 A K H > S+ 0 0 170 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.946 109.2 47.4 -60.0 -46.7 -15.1 -3.2 4.3 95 90 A D H > S+ 0 0 38 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.814 113.2 49.8 -65.9 -34.2 -13.6 -0.7 1.8 96 91 A R H X S+ 0 0 10 -4,-1.6 4,-2.9 2,-0.2 -2,-0.2 0.940 107.4 54.1 -62.4 -48.9 -10.1 -1.8 2.9 97 92 A N H X S+ 0 0 16 -4,-2.9 4,-2.3 1,-0.2 -91,-0.7 0.869 108.3 49.0 -63.4 -38.6 -10.9 -5.5 2.5 98 93 A D H X S+ 0 0 14 -4,-2.1 4,-2.1 2,-0.2 -87,-0.5 0.950 113.5 46.8 -55.0 -54.2 -12.0 -4.9 -1.1 99 94 A L H X S+ 0 0 4 -4,-1.5 4,-3.0 2,-0.2 5,-0.2 0.906 111.5 50.9 -61.0 -43.2 -8.8 -3.0 -1.9 100 95 A I H X S+ 0 0 2 -4,-2.9 4,-2.9 2,-0.2 5,-0.3 0.956 108.2 52.8 -55.1 -52.7 -6.6 -5.7 -0.2 101 96 A T H X S+ 0 0 29 -4,-2.3 4,-1.6 1,-0.2 -2,-0.2 0.879 114.5 43.3 -54.9 -41.6 -8.4 -8.4 -2.3 102 97 A Y H X S+ 0 0 48 -4,-2.1 4,-0.6 -95,-0.2 -2,-0.2 0.983 114.9 45.8 -62.2 -60.4 -7.5 -6.3 -5.5 103 98 A L H >< S+ 0 0 5 -4,-3.0 3,-0.6 1,-0.3 -2,-0.2 0.857 114.1 49.4 -61.6 -38.9 -3.8 -5.4 -4.5 104 99 A K H >X S+ 0 0 45 -4,-2.9 4,-2.6 -5,-0.2 3,-2.0 0.943 111.1 50.0 -56.6 -50.9 -3.2 -9.0 -3.5 105 100 A K H 3< S+ 0 0 118 -4,-1.6 -2,-0.2 -5,-0.3 -1,-0.2 0.399 106.5 56.1 -77.4 1.4 -4.7 -10.2 -6.9 106 101 A A T << S+ 0 0 23 -3,-0.6 -1,-0.3 -4,-0.6 -2,-0.2 0.265 111.7 42.9-101.6 -2.7 -2.4 -7.6 -8.7 107 102 A T T <4 0 0 40 -3,-2.0 -2,-0.2 -5,-0.2 -3,-0.1 0.713 360.0 360.0-110.4 -43.4 0.6 -9.4 -7.0 108 103 A E < 0 0 139 -4,-2.6 -3,-0.3 -5,-0.1 -4,-0.1 0.265 360.0 360.0-141.2 360.0 -0.7 -12.9 -7.6