==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 02-AUG-06 2HWV . COMPND 2 MOLECULE: DNA-BINDING RESPONSE REGULATOR VICR; . SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; . AUTHOR C.H.TRINH,Y.LIU,S.E.V.PHILLIPS,M.K.PHILLIPS-JONES . 101 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5945.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 66 65.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 18.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 9.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 29.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 132 A S 0 0 78 0, 0.0 2,-0.6 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 122.9 3.7 10.0 -5.0 2 133 A H + 0 0 131 9,-0.1 2,-0.3 10,-0.1 9,-0.2 -0.853 360.0 166.1 -84.0 120.8 0.9 7.6 -3.9 3 134 A M E -A 10 0A 36 7,-2.0 7,-3.0 -2,-0.6 2,-0.4 -0.965 30.6-153.4-138.9 149.5 1.9 4.3 -5.4 4 135 A T E -A 9 0A 103 -2,-0.3 2,-0.4 5,-0.2 5,-0.2 -0.977 6.1-175.4-120.7 141.9 1.1 0.6 -5.1 5 136 A I E > -A 8 0A 8 3,-2.9 3,-2.3 -2,-0.4 2,-0.1 -0.867 68.7 -64.6-133.5 97.0 3.5 -2.2 -6.0 6 137 A G T 3 S- 0 0 15 -2,-0.4 -1,-0.2 1,-0.3 93,-0.1 -0.394 122.7 -8.0 52.4-124.3 1.5 -5.4 -5.6 7 138 A D T 3 S+ 0 0 48 -3,-0.1 13,-1.2 -2,-0.1 2,-0.4 0.481 119.6 94.2 -78.5 -3.1 0.5 -5.6 -1.8 8 139 A L E < -AB 5 19A 0 -3,-2.3 -3,-2.9 11,-0.2 2,-0.5 -0.756 55.4-167.3 -92.2 138.2 2.8 -2.6 -0.9 9 140 A T E -AB 4 18A 40 9,-2.6 9,-2.3 -2,-0.4 2,-0.5 -0.990 4.0-160.6-125.5 123.2 1.4 0.9 -0.7 10 141 A I E -A 3 0A 1 -7,-3.0 -7,-2.0 -2,-0.5 7,-0.1 -0.889 9.2-175.3 -99.7 127.6 3.7 4.0 -0.6 11 142 A H - 0 0 64 -2,-0.5 3,-0.3 5,-0.4 5,-0.3 -0.879 28.0-132.1-111.8 157.0 2.1 7.2 0.7 12 143 A P S S+ 0 0 73 0, 0.0 -10,-0.1 0, 0.0 -1,-0.0 0.644 89.2 80.6 -84.7 -7.7 4.1 10.5 0.7 13 144 A D S S+ 0 0 117 2,-0.0 2,-0.3 1,-0.0 -3,-0.0 0.801 95.9 13.1 -68.9 -32.4 3.2 11.4 4.4 14 145 A A S S- 0 0 36 -3,-0.3 2,-1.7 2,-0.1 -3,-0.2 -0.886 78.2 -94.8-147.3 162.6 5.7 9.3 6.4 15 146 A Y S S+ 0 0 100 -2,-0.3 11,-2.3 11,-0.1 2,-0.3 -0.670 90.7 88.3 -83.4 84.5 8.8 7.1 6.5 16 147 A M E - C 0 25A 29 -2,-1.7 -5,-0.4 9,-0.3 2,-0.3 -0.972 62.4-137.3-164.8 167.2 6.8 3.9 6.2 17 148 A V E - C 0 24A 0 7,-2.0 7,-3.1 -2,-0.3 2,-0.4 -0.972 18.1-138.4-133.9 149.9 5.2 1.4 3.8 18 149 A S E -BC 9 23A 15 -9,-2.3 -9,-2.6 -2,-0.3 2,-0.4 -0.901 16.8-176.3-108.4 142.2 1.9 -0.3 4.1 19 150 A K E > S-BC 8 22A 22 3,-2.6 3,-1.8 -2,-0.4 -11,-0.2 -0.925 70.6 -29.5-142.6 108.3 1.3 -4.0 3.4 20 151 A R T 3 S- 0 0 142 -13,-1.2 3,-0.1 -2,-0.4 -12,-0.1 0.868 128.3 -41.8 49.9 46.0 -2.2 -5.5 3.5 21 152 A G T 3 S+ 0 0 83 1,-0.3 2,-0.4 0, 0.0 -1,-0.3 0.384 115.4 113.3 86.7 -3.0 -3.4 -3.1 6.1 22 153 A E E < -C 19 0A 109 -3,-1.8 -3,-2.6 2,-0.0 2,-0.5 -0.872 56.7-145.4-100.6 131.7 -0.3 -3.1 8.2 23 154 A K E -C 18 0A 156 -2,-0.4 2,-0.5 -5,-0.2 -5,-0.2 -0.881 13.9-164.8 -98.1 132.5 2.0 -0.0 8.5 24 155 A I E -C 17 0A 17 -7,-3.1 -7,-2.0 -2,-0.5 2,-0.2 -0.964 15.7-131.0-123.0 117.1 5.7 -0.7 8.8 25 156 A E E -C 16 0A 158 -2,-0.5 2,-0.3 -9,-0.2 -9,-0.3 -0.439 23.7-167.2 -67.2 137.1 8.1 2.0 9.9 26 157 A L - 0 0 4 -11,-2.3 -11,-0.1 -2,-0.2 2,-0.0 -0.923 21.3-116.9-119.8 148.2 11.2 2.6 7.8 27 158 A T > - 0 0 65 -2,-0.3 4,-2.6 1,-0.1 5,-0.2 -0.265 40.8 -98.8 -65.8 168.8 14.3 4.6 8.6 28 159 A H H > S+ 0 0 107 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.949 126.1 43.7 -55.0 -50.5 15.1 7.6 6.4 29 160 A R H > S+ 0 0 76 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.878 111.8 52.3 -63.6 -42.5 17.6 5.6 4.3 30 161 A E H > S+ 0 0 7 2,-0.2 4,-2.8 1,-0.2 -1,-0.2 0.956 114.2 44.0 -59.9 -46.8 15.3 2.5 4.1 31 162 A F H X S+ 0 0 24 -4,-2.6 4,-3.2 2,-0.2 5,-0.3 0.918 113.1 49.8 -63.1 -49.1 12.4 4.7 2.8 32 163 A E H X S+ 0 0 64 -4,-2.6 4,-2.2 -5,-0.2 -1,-0.2 0.886 113.8 46.8 -58.4 -42.6 14.6 6.7 0.4 33 164 A L H X S+ 0 0 0 -4,-2.5 4,-2.7 2,-0.2 -2,-0.2 0.951 115.0 45.6 -63.6 -51.6 16.0 3.4 -1.1 34 165 A L H X S+ 0 0 1 -4,-2.8 4,-2.8 -5,-0.2 -2,-0.2 0.918 115.2 46.7 -59.2 -47.4 12.6 1.8 -1.4 35 166 A Y H X S+ 0 0 64 -4,-3.2 4,-2.4 2,-0.2 -1,-0.2 0.900 111.9 51.2 -63.0 -43.3 11.0 4.9 -2.9 36 167 A Y H X S+ 0 0 41 -4,-2.2 4,-1.3 -5,-0.3 -2,-0.2 0.923 111.9 46.1 -59.8 -45.9 14.0 5.3 -5.3 37 168 A L H < S+ 0 0 0 -4,-2.7 60,-0.4 1,-0.2 6,-0.3 0.905 110.3 55.0 -64.5 -39.9 13.6 1.7 -6.4 38 169 A A H >< S+ 0 0 7 -4,-2.8 3,-1.3 1,-0.2 -2,-0.2 0.902 105.8 51.6 -55.6 -43.5 9.8 2.2 -6.7 39 170 A K H 3< S+ 0 0 115 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.2 0.830 117.1 40.5 -62.0 -30.2 10.4 5.2 -9.1 40 171 A H T >< S- 0 0 43 -4,-1.3 3,-2.6 -3,-0.2 57,-0.3 -0.302 90.8-177.6-113.0 41.4 12.7 2.9 -11.1 41 172 A I T < + 0 0 82 -3,-1.3 57,-0.2 1,-0.3 -3,-0.1 -0.135 70.0 3.6 -49.7 133.9 10.4 -0.1 -10.8 42 173 A G T 3 S+ 0 0 47 55,-3.3 2,-0.5 1,-0.2 -1,-0.3 0.507 100.9 122.8 61.4 6.4 11.8 -3.2 -12.5 43 174 A Q < - 0 0 98 -3,-2.6 2,-0.4 -6,-0.3 54,-0.3 -0.874 65.0-126.1 -94.0 128.8 15.1 -1.3 -13.4 44 175 A V - 0 0 53 -2,-0.5 2,-0.5 52,-0.1 52,-0.2 -0.638 25.8-162.0 -75.5 125.5 18.2 -3.0 -12.0 45 176 A M B -D 95 0B 15 50,-3.0 50,-2.5 -2,-0.4 48,-0.1 -0.957 12.3-132.8-112.4 124.1 20.2 -0.5 -9.9 46 177 A T > - 0 0 64 -2,-0.5 4,-2.4 48,-0.3 48,-0.2 -0.296 22.7-115.5 -67.4 157.5 23.9 -1.1 -9.1 47 178 A R H > S+ 0 0 88 46,-0.4 4,-2.9 1,-0.2 5,-0.1 0.873 116.9 52.7 -62.8 -38.6 25.1 -0.6 -5.6 48 179 A E H > S+ 0 0 53 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.897 109.5 48.6 -64.2 -40.8 27.4 2.3 -6.6 49 180 A H H > S+ 0 0 64 2,-0.2 4,-2.2 1,-0.2 -2,-0.2 0.920 113.5 47.4 -63.7 -43.3 24.4 4.0 -8.3 50 181 A L H X>S+ 0 0 0 -4,-2.4 4,-3.1 2,-0.2 5,-0.8 0.926 111.3 51.6 -62.8 -45.7 22.3 3.5 -5.2 51 182 A L H X>S+ 0 0 0 -4,-2.9 4,-1.7 1,-0.2 5,-0.9 0.943 112.8 44.6 -53.6 -55.0 25.2 4.8 -3.0 52 183 A Q H <5S+ 0 0 98 -4,-2.6 5,-0.4 3,-0.2 -1,-0.2 0.854 121.6 38.1 -58.5 -40.1 25.6 8.0 -5.0 53 184 A T H <5S+ 0 0 68 -4,-2.2 -2,-0.2 3,-0.2 -1,-0.2 0.905 127.8 28.3 -81.1 -44.5 21.8 8.7 -5.3 54 185 A V H <5S+ 0 0 15 -4,-3.1 -3,-0.2 -5,-0.2 -2,-0.2 0.787 143.1 7.9 -91.9 -31.8 20.5 7.7 -1.8 55 186 A W T < < - 0 0 14 -5,-0.9 3,-2.6 -7,-0.1 4,-0.3 -0.496 26.2 -6.0-142.7 -93.1 25.7 9.8 -1.8 57 188 A Y G > S+ 0 0 196 -5,-0.4 3,-1.2 1,-0.3 -5,-0.1 0.761 121.1 47.3 -49.3 -46.9 29.2 11.1 -3.0 58 189 A D G 3 S+ 0 0 149 1,-0.2 -1,-0.3 -7,-0.1 -6,-0.1 0.577 106.6 62.3 -69.7 -9.4 31.2 10.4 0.2 59 190 A Y G X + 0 0 86 -3,-2.6 3,-2.5 -8,-0.2 -1,-0.2 0.397 68.5 133.4-100.2 -0.4 29.7 6.8 0.4 60 191 A F T < S+ 0 0 119 -3,-1.2 -12,-0.1 -4,-0.3 -11,-0.0 -0.267 75.1 21.5 -52.8 133.0 31.1 5.5 -2.9 61 192 A G T 3 S+ 0 0 41 1,-0.1 2,-1.3 2,-0.0 3,-0.3 0.300 88.0 113.0 87.7 -9.8 32.6 2.0 -2.4 62 193 A D X> + 0 0 73 -3,-2.5 3,-1.7 1,-0.2 4,-0.8 -0.336 33.6 152.6 -85.8 52.2 30.6 1.4 0.8 63 194 A V H 3> + 0 0 37 -2,-1.3 4,-2.0 1,-0.3 3,-0.4 0.807 62.9 64.5 -59.2 -31.2 28.7 -1.4 -1.1 64 195 A R H 3> S+ 0 0 162 -3,-0.3 4,-2.9 1,-0.2 -1,-0.3 0.820 92.6 63.2 -56.1 -37.9 28.0 -3.2 2.2 65 196 A T H <> S+ 0 0 35 -3,-1.7 4,-1.9 2,-0.2 -1,-0.2 0.901 105.9 44.7 -55.5 -44.7 25.9 -0.3 3.3 66 197 A V H X S+ 0 0 0 -4,-0.8 4,-3.2 -3,-0.4 -2,-0.2 0.951 113.1 50.6 -61.9 -52.7 23.5 -0.9 0.4 67 198 A D H X S+ 0 0 34 -4,-2.0 4,-2.5 1,-0.2 -2,-0.2 0.883 112.1 46.3 -55.2 -43.1 23.5 -4.7 1.1 68 199 A V H X S+ 0 0 28 -4,-2.9 4,-2.6 2,-0.2 -1,-0.2 0.903 113.6 48.7 -69.3 -37.9 22.7 -4.3 4.8 69 200 A T H X S+ 0 0 13 -4,-1.9 4,-2.7 -5,-0.2 -2,-0.2 0.905 111.0 50.5 -67.6 -42.0 20.0 -1.7 4.0 70 201 A V H X S+ 0 0 0 -4,-3.2 4,-2.8 2,-0.2 -2,-0.2 0.945 110.9 50.1 -56.3 -49.7 18.5 -4.1 1.4 71 202 A R H X S+ 0 0 137 -4,-2.5 4,-2.5 1,-0.2 -2,-0.2 0.913 111.7 46.9 -55.4 -48.0 18.5 -6.9 4.0 72 203 A R H X S+ 0 0 130 -4,-2.6 4,-1.7 2,-0.2 -1,-0.2 0.909 111.8 51.2 -60.1 -43.9 16.8 -4.7 6.6 73 204 A L H X S+ 0 0 0 -4,-2.7 4,-2.9 1,-0.2 5,-0.3 0.904 111.2 48.1 -59.5 -45.5 14.2 -3.6 4.0 74 205 A R H X S+ 0 0 37 -4,-2.8 4,-2.6 2,-0.2 -1,-0.2 0.884 107.6 54.8 -60.9 -43.5 13.6 -7.2 3.1 75 206 A E H < S+ 0 0 119 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.816 117.6 38.0 -59.6 -33.9 13.2 -8.1 6.9 76 207 A K H < S+ 0 0 70 -4,-1.7 -2,-0.2 -5,-0.2 -1,-0.2 0.861 128.6 27.3 -83.8 -39.6 10.6 -5.4 7.1 77 208 A I H < S+ 0 0 0 -4,-2.9 2,-0.3 -5,-0.2 -3,-0.2 0.675 96.7 89.5-105.8 -19.5 8.7 -5.8 3.8 78 209 A E < - 0 0 8 -4,-2.6 4,-0.1 -5,-0.3 -4,-0.0 -0.662 65.2-140.4 -90.1 138.6 9.0 -9.4 2.6 79 210 A D S S+ 0 0 93 -2,-0.3 -1,-0.1 1,-0.3 -5,-0.0 0.927 107.9 12.6 -49.4 -53.3 6.6 -12.2 3.5 80 211 A S S > S- 0 0 54 3,-0.3 3,-1.9 1,-0.1 -1,-0.3 -0.904 75.6-162.6-129.3 104.0 9.7 -14.4 3.7 81 212 A P T 3 S+ 0 0 53 0, 0.0 -6,-0.1 0, 0.0 -1,-0.1 0.764 90.4 58.6 -53.3 -32.6 12.9 -12.2 3.8 82 213 A S T 3 S+ 0 0 93 1,-0.3 -7,-0.0 -4,-0.1 -8,-0.0 0.654 114.3 38.1 -76.6 -15.1 15.1 -15.2 2.9 83 214 A H S < S- 0 0 128 -3,-1.9 -3,-0.3 0, 0.0 -1,-0.3 -0.546 89.1-167.3-128.9 68.9 13.1 -15.7 -0.3 84 215 A P + 0 0 34 0, 0.0 5,-0.1 0, 0.0 -10,-0.0 -0.177 21.8 169.8 -64.2 145.7 12.4 -12.1 -1.5 85 216 A T S S+ 0 0 51 3,-0.1 3,-0.2 13,-0.1 13,-0.0 0.514 78.2 41.0-127.2 -16.9 9.8 -11.4 -4.2 86 217 A Y S S+ 0 0 1 1,-0.2 12,-2.1 13,-0.1 2,-0.8 0.868 119.1 38.9 -91.4 -54.3 9.5 -7.6 -4.1 87 218 A L E S-E 97 0B 0 10,-0.2 2,-0.3 -17,-0.1 -1,-0.2 -0.854 85.6-179.0-107.8 101.1 13.1 -6.5 -3.6 88 219 A V E -E 96 0B 20 8,-2.5 8,-2.4 -2,-0.8 2,-0.5 -0.718 25.2-129.4-116.8 145.5 15.1 -8.8 -5.8 89 220 A T E -E 95 0B 60 -2,-0.3 2,-0.9 6,-0.2 6,-0.2 -0.846 4.5-153.5 -93.2 123.0 18.8 -9.3 -6.5 90 221 A R E >> -E 94 0B 128 4,-2.5 3,-2.7 -2,-0.5 4,-1.8 -0.886 45.6-111.8 -86.9 102.8 20.0 -9.5 -10.1 91 222 A R T 34 S- 0 0 219 -2,-0.9 4,-0.0 1,-0.3 -1,-0.0 -0.052 89.6 -2.9 -51.3 128.2 23.1 -11.5 -9.2 92 223 A G T 34 S+ 0 0 66 1,-0.1 -1,-0.3 2,-0.0 -46,-0.0 0.414 129.1 65.5 73.5 1.4 26.4 -9.6 -9.7 93 224 A V T <4 S- 0 0 79 -3,-2.7 -46,-0.4 1,-0.3 2,-0.3 0.759 99.6 -91.8-119.3 -57.0 24.6 -6.5 -11.1 94 225 A G E < - E 0 90B 6 -4,-1.8 -4,-2.5 -48,-0.2 -1,-0.3 -0.962 43.2 -58.1 171.4-148.7 22.4 -4.8 -8.5 95 226 A Y E -DE 45 89B 23 -50,-2.5 -50,-3.0 -2,-0.3 2,-0.3 -0.882 34.8-178.1-127.0 152.0 18.9 -4.6 -7.0 96 227 A Y E - E 0 88B 27 -8,-2.4 -8,-2.5 -2,-0.3 2,-0.4 -0.992 22.9-129.0-144.8 157.4 15.4 -3.9 -8.3 97 228 A L E + E 0 87B 0 -60,-0.4 -55,-3.3 -2,-0.3 2,-0.3 -0.856 33.8 172.1 -99.7 141.6 11.9 -3.6 -7.0 98 229 A R - 0 0 88 -12,-2.1 -13,-0.1 -2,-0.4 -93,-0.1 -0.950 39.4-115.0-141.5 160.7 9.1 -5.5 -8.8 99 230 A N - 0 0 84 -2,-0.3 -93,-0.1 1,-0.1 -13,-0.1 -0.910 28.1-174.4 -92.8 109.1 5.5 -6.4 -8.4 100 231 A P 0 0 49 0, 0.0 -1,-0.1 0, 0.0 -14,-0.1 0.560 360.0 360.0 -82.1 -6.4 5.5 -10.2 -7.9 101 232 A E 0 0 127 0, 0.0 -95,-0.1 0, 0.0 -2,-0.1 -0.680 360.0 360.0 -91.4 360.0 1.6 -10.5 -8.0