==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ENDOCYTOSIS/EXOCYTOSIS 19-JAN-01 1HYI . COMPND 2 MOLECULE: ENDOSOME-ASSOCIATED PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.KUTATELADZE,M.OVERDUIN . 65 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4869.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 33 50.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 15.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 4.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 12.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A R 0 0 263 0, 0.0 4,-0.1 0, 0.0 6,-0.1 0.000 360.0 360.0 360.0 -75.7 14.4 -6.0 -0.4 2 2 A K + 0 0 175 2,-0.1 2,-0.3 3,-0.0 0, 0.0 0.828 360.0 61.7 -64.1 -27.8 12.2 -8.6 -2.0 3 3 A W S S- 0 0 153 2,-0.0 2,-2.0 1,-0.0 4,-0.2 -0.748 96.4-112.3-100.4 147.8 9.2 -6.2 -1.8 4 4 A A + 0 0 24 -2,-0.3 2,-0.8 1,-0.1 23,-0.1 -0.497 48.4 161.7 -76.8 81.9 9.2 -2.8 -3.5 5 5 A E S S- 0 0 146 -2,-2.0 -1,-0.1 1,-0.1 -2,-0.0 -0.385 76.3 -77.4 -99.0 58.4 9.4 -0.6 -0.4 6 6 A D S S+ 0 0 63 -2,-0.8 -2,-0.1 1,-0.1 -1,-0.1 0.750 84.8 149.2 58.5 18.7 10.5 2.7 -2.2 7 7 A N S S- 0 0 86 1,-0.2 -1,-0.1 -4,-0.2 -3,-0.1 0.847 90.2 -37.6 -53.2 -29.9 13.9 1.0 -2.3 8 8 A E S S+ 0 0 172 3,-0.0 -1,-0.2 0, 0.0 -2,-0.0 0.212 110.9 109.4 174.7 33.0 14.4 3.0 -5.5 9 9 A V + 0 0 41 1,-0.0 10,-0.0 9,-0.0 -4,-0.0 0.930 20.5 156.7 -86.6 -76.2 11.1 3.1 -7.4 10 10 A Q + 0 0 87 8,-0.1 9,-0.3 1,-0.1 2,-0.2 0.861 62.2 78.5 53.7 32.3 9.7 6.6 -7.3 11 11 A N S S- 0 0 69 7,-0.2 7,-0.2 24,-0.0 23,-0.2 -0.680 82.2-122.1-170.6 112.1 7.8 5.7 -10.5 12 12 A C - 0 0 6 5,-1.4 23,-0.3 -2,-0.2 15,-0.1 0.025 22.3-130.6 -47.9 166.8 4.6 3.7 -11.0 13 13 A M S S+ 0 0 99 21,-2.9 22,-0.2 3,-0.1 -1,-0.1 0.903 95.8 33.6 -90.1 -50.3 5.0 0.7 -13.3 14 14 A A S S+ 0 0 63 20,-0.4 21,-0.1 1,-0.1 20,-0.0 0.933 133.7 22.8 -69.7 -91.6 2.0 1.2 -15.6 15 15 A C S S- 0 0 58 1,-0.1 -1,-0.1 21,-0.1 20,-0.1 0.840 94.3-152.2 -46.6 -27.1 1.4 4.9 -16.0 16 16 A G + 0 0 35 18,-0.2 2,-0.3 1,-0.2 -1,-0.1 0.924 30.7 167.3 55.7 43.4 5.1 5.1 -15.0 17 17 A K - 0 0 54 1,-0.1 -5,-1.4 3,-0.0 2,-1.2 -0.657 46.3-107.4 -90.6 146.2 4.6 8.6 -13.6 18 18 A G - 0 0 50 -2,-0.3 -7,-0.2 -7,-0.2 5,-0.2 -0.549 42.1-121.4 -72.9 99.4 7.3 10.2 -11.4 19 19 A F + 0 0 29 -2,-1.2 2,-0.2 -9,-0.3 5,-0.1 -0.058 47.1 166.4 -39.7 132.9 5.6 10.0 -8.0 20 20 A S - 0 0 62 3,-0.9 -1,-0.1 4,-0.1 -10,-0.0 -0.676 54.2 -73.8-138.1-166.4 5.3 13.5 -6.6 21 21 A V S S+ 0 0 149 -2,-0.2 3,-0.1 1,-0.2 -2,-0.1 0.732 129.9 46.4 -69.2 -19.0 3.6 15.5 -3.8 22 22 A T S S+ 0 0 115 1,-0.2 2,-0.4 2,-0.0 -1,-0.2 0.909 112.8 45.0 -89.2 -49.7 0.3 15.2 -5.8 23 23 A V S S- 0 0 37 -5,-0.2 -3,-0.9 1,-0.0 -1,-0.2 -0.799 74.6-152.3 -98.8 135.8 0.3 11.5 -6.7 24 24 A R - 0 0 169 -2,-0.4 13,-0.9 -5,-0.1 2,-0.4 -0.256 16.9-114.3 -92.4-174.0 1.1 8.9 -4.1 25 25 A R E +A 36 0A 115 11,-0.2 2,-0.4 12,-0.1 11,-0.2 -0.970 30.3 173.0-126.5 139.4 2.6 5.4 -4.7 26 26 A H E -A 35 0A 26 9,-3.0 9,-3.7 -2,-0.4 2,-0.3 -0.958 15.2-153.1-145.7 124.0 1.0 2.0 -4.1 27 27 A H E -A 34 0A 52 -2,-0.4 2,-0.4 7,-0.3 7,-0.3 -0.742 26.6-109.2-101.0 148.6 2.4 -1.4 -5.1 28 28 A C > - 0 0 1 5,-2.9 4,-1.1 -2,-0.3 5,-0.5 -0.567 18.2-153.3 -73.5 123.2 0.3 -4.5 -5.8 29 29 A R T 4 S+ 0 0 131 25,-2.8 -1,-0.2 -2,-0.4 26,-0.1 0.660 91.2 52.0 -72.0 -11.8 0.8 -7.0 -2.9 30 30 A Q T 4 S+ 0 0 107 24,-0.4 -1,-0.1 3,-0.1 25,-0.1 0.930 124.8 16.9 -87.5 -72.9 -0.0 -9.9 -5.4 31 31 A C T 4 S- 0 0 82 2,-0.1 -2,-0.1 1,-0.0 24,-0.1 0.881 102.8-124.4 -68.7 -34.8 2.3 -9.4 -8.4 32 32 A G < + 0 0 39 -4,-1.1 2,-0.3 1,-0.2 -3,-0.2 0.890 58.3 140.8 92.3 49.0 4.6 -7.1 -6.4 33 33 A N - 0 0 48 -5,-0.5 -5,-2.9 -30,-0.0 2,-0.6 -0.885 53.7-115.8-123.0 156.4 4.6 -4.0 -8.7 34 34 A I E +A 27 0A 4 -2,-0.3 -21,-2.9 -7,-0.3 -20,-0.4 -0.784 37.6 177.5 -92.5 120.4 4.5 -0.2 -7.9 35 35 A F E -A 26 0A 19 -9,-3.7 -9,-3.0 -2,-0.6 -23,-0.0 -0.917 26.3-118.6-122.4 149.0 1.3 1.5 -9.1 36 36 A C E >> -A 25 0A 0 -2,-0.3 4,-3.2 -11,-0.2 3,-0.6 -0.303 45.9 -86.2 -79.2 168.4 0.2 5.1 -8.8 37 37 A A T 34 S+ 0 0 46 -13,-0.9 -1,-0.1 1,-0.3 -12,-0.1 0.757 133.1 48.5 -46.5 -23.0 -3.0 6.2 -6.9 38 38 A E T >4 S+ 0 0 142 2,-0.1 3,-0.7 1,-0.1 -1,-0.3 0.865 115.0 40.7 -88.2 -37.9 -4.8 5.6 -10.3 39 39 A C T <4 S+ 0 0 23 -3,-0.6 18,-1.1 1,-0.2 -2,-0.2 0.894 119.8 44.7 -76.9 -38.4 -3.3 2.2 -11.1 40 40 A S T 3< S+ 0 0 5 -4,-3.2 2,-0.6 16,-0.2 -1,-0.2 0.129 78.1 116.5 -90.9 23.3 -3.6 0.9 -7.5 41 41 A A < + 0 0 65 -3,-0.7 2,-0.3 -5,-0.2 -1,-0.2 -0.024 62.5 75.2 -81.8 37.5 -7.1 2.3 -7.2 42 42 A K E +B 55 0B 77 -2,-0.6 13,-1.6 13,-0.6 2,-0.3 -0.963 53.8 178.2-150.6 130.7 -8.5 -1.2 -6.7 43 43 A N E -B 54 0B 78 -2,-0.3 2,-0.3 11,-0.2 11,-0.2 -0.955 7.4-164.4-131.1 150.7 -8.5 -3.7 -3.8 44 44 A A E -B 53 0B 4 9,-1.7 9,-2.0 -2,-0.3 2,-0.5 -0.980 23.4-116.9-136.6 150.0 -10.0 -7.1 -3.3 45 45 A L E -B 52 0B 112 -2,-0.3 5,-0.0 7,-0.3 -2,-0.0 -0.704 31.3-158.8 -85.8 126.6 -10.7 -9.5 -0.4 46 46 A T E >>> -B 51 0B 19 5,-1.8 4,-1.4 -2,-0.5 5,-1.1 -0.865 22.1-141.5-108.8 141.7 -8.8 -12.7 -0.5 47 47 A P T 345S+ 0 0 125 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.552 94.9 80.0 -73.2 -6.2 -9.7 -15.9 1.3 48 48 A S T 345S- 0 0 116 1,-0.2 -3,-0.0 3,-0.1 0, 0.0 0.871 121.2 -0.8 -70.1 -34.6 -6.0 -16.4 2.0 49 49 A S T <45S- 0 0 69 -3,-0.9 -1,-0.2 2,-0.2 -4,-0.0 0.277 95.1-116.9-137.1 7.8 -6.0 -13.9 4.9 50 50 A K T <5S+ 0 0 183 -4,-1.4 -5,-0.1 1,-0.2 0, 0.0 0.929 80.2 107.6 55.7 44.2 -9.7 -12.8 5.0 51 51 A K E - 0 0 18 -2,-0.3 4,-2.1 -15,-0.1 -16,-0.2 -0.123 50.2 -95.0 -70.4 174.0 -3.8 -3.1 -9.3 57 57 A D H > S+ 0 0 86 -18,-1.1 4,-1.4 2,-0.2 5,-0.2 0.922 120.7 48.2 -58.0 -46.2 -7.0 -3.0 -11.4 58 58 A A H >> S+ 0 0 58 2,-0.2 4,-2.3 1,-0.2 3,-1.0 0.997 115.8 39.5 -61.3 -65.9 -6.2 -6.2 -13.4 59 59 A C H 3>>S+ 0 0 9 1,-0.3 4,-2.9 2,-0.2 5,-0.6 0.889 107.3 67.3 -53.4 -37.2 -5.2 -8.5 -10.6 60 60 A F H 3X5S+ 0 0 41 -4,-2.1 4,-1.4 1,-0.3 -1,-0.3 0.925 112.4 31.7 -50.8 -43.9 -8.0 -7.1 -8.4 61 61 A N H <<5S+ 0 0 100 -4,-1.4 4,-0.3 -3,-1.0 -1,-0.3 0.757 116.8 58.6 -85.7 -23.9 -10.5 -8.7 -10.8 62 62 A D H <5S+ 0 0 121 -4,-2.3 -2,-0.2 -5,-0.2 -3,-0.2 0.787 119.7 28.5 -75.6 -25.3 -8.1 -11.6 -11.6 63 63 A L H <5S+ 0 0 27 -4,-2.9 -2,-0.2 -5,-0.2 -3,-0.2 0.683 101.4 78.8-106.5 -24.0 -8.0 -12.6 -7.9 64 64 A Q << 0 0 114 -4,-1.4 -2,-0.1 -5,-0.6 -3,-0.1 0.703 360.0 360.0 -58.6 -13.5 -11.4 -11.3 -6.8 65 65 A G 0 0 105 -4,-0.3 -1,-0.2 -5,-0.1 -2,-0.2 0.139 360.0 360.0-178.0 360.0 -12.7 -14.5 -8.4