==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ENDOCYTOSIS/EXOCYTOSIS 19-JAN-01 1HYJ . COMPND 2 MOLECULE: ENDOSOME-ASSOCIATED PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.KUTATELADZE,M.OVERDUIN . 65 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4936.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 30 46.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 13.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 4.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 10.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A R 0 0 222 0, 0.0 3,-0.1 0, 0.0 4,-0.0 0.000 360.0 360.0 360.0 107.2 16.8 -0.6 -4.7 2 2 A K - 0 0 203 1,-0.0 3,-0.1 0, 0.0 2,-0.0 0.673 360.0 -53.6-122.3 -55.0 15.9 -4.0 -6.1 3 3 A W S S+ 0 0 188 1,-0.0 2,-2.3 0, 0.0 -1,-0.0 -0.046 119.6 38.5-152.8 -97.5 12.4 -4.0 -7.7 4 4 A A S S+ 0 0 44 1,-0.1 2,-0.5 -3,-0.1 3,-0.1 -0.425 73.4 145.9 -69.5 83.1 9.2 -2.9 -5.9 5 5 A E > - 0 0 73 -2,-2.3 3,-2.8 1,-0.1 4,-0.2 -0.771 40.4-159.5-125.3 88.9 10.8 0.0 -4.0 6 6 A D G > S+ 0 0 71 -2,-0.5 3,-4.2 1,-0.3 -1,-0.1 0.773 80.0 92.0 -35.9 -28.9 8.4 3.0 -3.6 7 7 A N G 3 S+ 0 0 113 1,-0.3 -1,-0.3 -3,-0.1 -3,-0.0 0.846 99.1 29.5 -38.9 -38.8 11.6 5.0 -3.1 8 8 A E G < S+ 0 0 113 -3,-2.8 2,-1.3 1,-0.1 -1,-0.3 0.099 90.2 118.4-111.0 23.1 11.6 5.6 -6.9 9 9 A V < + 0 0 15 -3,-4.2 3,-0.1 -4,-0.2 -3,-0.1 -0.641 24.6 123.3 -91.8 86.7 7.8 5.5 -7.3 10 10 A Q + 0 0 105 -2,-1.3 9,-0.4 1,-0.2 2,-0.2 0.076 66.3 51.9-129.1 23.0 6.9 9.0 -8.5 11 11 A N S S- 0 0 92 7,-0.2 -1,-0.2 -3,-0.1 7,-0.2 -0.696 85.0-119.7-161.9 103.7 5.1 8.1 -11.8 12 12 A C - 0 0 5 5,-1.7 23,-0.2 -2,-0.2 -2,-0.0 -0.104 17.1-145.1 -42.8 134.1 2.2 5.6 -12.1 13 13 A M S S+ 0 0 115 21,-1.1 -1,-0.2 3,-0.1 22,-0.1 0.523 93.3 45.5 -83.9 -2.6 3.4 2.8 -14.5 14 14 A A S S+ 0 0 54 20,-0.2 -1,-0.1 3,-0.1 21,-0.1 0.839 131.3 8.1-102.9 -68.0 -0.2 2.5 -15.9 15 15 A C S S- 0 0 72 2,-0.0 -2,-0.1 21,-0.0 20,-0.0 0.865 93.8-123.5 -84.9 -37.2 -1.6 6.0 -16.6 16 16 A G + 0 0 54 1,-0.2 2,-0.1 0, 0.0 -3,-0.1 0.734 46.2 168.5 100.2 27.7 1.6 8.0 -16.0 17 17 A K - 0 0 67 1,-0.1 -5,-1.7 -6,-0.0 2,-0.9 -0.443 38.6-119.5 -73.6 147.1 0.3 10.4 -13.4 18 18 A G - 0 0 59 -7,-0.2 -7,-0.2 -2,-0.1 -1,-0.1 -0.750 29.3-142.1 -90.0 107.4 2.8 12.5 -11.4 19 19 A F + 0 0 22 -2,-0.9 2,-0.3 -9,-0.4 5,-0.1 -0.111 31.0 159.8 -60.6 165.8 2.5 11.5 -7.7 20 20 A S - 0 0 78 3,-0.5 3,-0.3 1,-0.0 -1,-0.0 -0.951 56.7 -76.5-168.6-173.8 2.9 14.3 -5.2 21 21 A V S S+ 0 0 148 -2,-0.3 -2,-0.0 1,-0.2 -1,-0.0 0.761 125.9 57.4 -73.2 -21.4 2.1 15.3 -1.5 22 22 A T S S+ 0 0 125 2,-0.0 2,-0.3 -3,-0.0 -1,-0.2 0.775 109.1 49.1 -79.8 -24.2 -1.5 16.0 -2.5 23 23 A V S S- 0 0 45 -3,-0.3 -3,-0.5 13,-0.0 2,-0.2 -0.867 82.0-130.9-115.2 149.6 -1.9 12.4 -3.8 24 24 A R - 0 0 206 -2,-0.3 13,-0.4 -5,-0.1 2,-0.3 -0.599 23.1-113.9 -95.7 159.7 -1.0 9.1 -2.0 25 25 A R - 0 0 126 -2,-0.2 2,-0.3 11,-0.1 11,-0.2 -0.704 30.1-166.8 -93.5 143.9 1.0 6.3 -3.6 26 26 A H E -A 35 0A 22 9,-1.4 9,-1.4 -2,-0.3 2,-0.3 -0.870 6.0-169.6-125.3 160.3 -0.6 2.9 -4.2 27 27 A H E -A 34 0A 39 7,-0.3 7,-0.3 -2,-0.3 2,-0.2 -0.890 21.0-129.9-154.8 120.4 0.9 -0.5 -5.0 28 28 A C - 0 0 1 5,-2.5 4,-0.4 -2,-0.3 5,-0.4 -0.482 11.4-163.5 -70.6 134.1 -0.8 -3.8 -6.1 29 29 A R S S+ 0 0 188 25,-0.8 -1,-0.1 -2,-0.2 26,-0.1 0.710 83.6 61.2 -90.4 -21.5 0.3 -6.8 -4.1 30 30 A Q S S+ 0 0 86 24,-0.3 -1,-0.1 1,-0.1 25,-0.1 0.985 125.8 12.2 -69.8 -57.1 -1.0 -9.4 -6.6 31 31 A C S S- 0 0 67 2,-0.1 -2,-0.1 25,-0.0 -1,-0.1 0.803 100.8-123.9 -90.3 -31.6 1.1 -8.4 -9.6 32 32 A G + 0 0 12 -4,-0.4 2,-0.5 1,-0.3 -3,-0.2 0.876 60.5 139.0 90.3 43.3 3.6 -6.2 -7.7 33 33 A N - 0 0 63 -5,-0.4 -5,-2.5 -29,-0.1 -1,-0.3 -0.971 53.5-123.8-124.9 126.9 3.1 -2.9 -9.7 34 34 A I E -A 27 0A 7 -2,-0.5 -21,-1.1 -7,-0.3 -7,-0.3 -0.458 36.9-178.3 -67.6 131.5 2.9 0.5 -8.1 35 35 A F E -A 26 0A 18 -9,-1.4 -9,-1.4 -2,-0.2 2,-0.1 -0.892 21.3-122.9-129.9 161.6 -0.4 2.3 -9.2 36 36 A C > - 0 0 0 -2,-0.3 4,-3.2 -11,-0.2 3,-0.4 -0.409 44.8 -87.7 -95.5 176.3 -1.9 5.7 -8.5 37 37 A A T 4 S+ 0 0 44 -13,-0.4 -1,-0.1 1,-0.2 -12,-0.1 0.720 128.3 58.0 -57.6 -16.0 -5.4 6.5 -6.9 38 38 A E T 4 S+ 0 0 111 2,-0.1 3,-0.3 1,-0.1 -1,-0.2 0.915 116.7 27.8 -81.9 -44.7 -6.7 6.2 -10.5 39 39 A C T 4 S+ 0 0 15 -3,-0.4 18,-0.9 1,-0.2 -2,-0.2 0.784 122.6 52.0 -87.6 -27.6 -5.6 2.6 -11.3 40 40 A S S < S+ 0 0 8 -4,-3.2 2,-2.9 16,-0.2 -1,-0.2 0.357 73.9 114.0 -89.6 8.9 -5.6 1.4 -7.6 41 41 A A + 0 0 69 -3,-0.3 2,-0.3 -5,-0.3 -1,-0.2 -0.207 63.4 80.7 -74.5 55.1 -9.2 2.7 -7.2 42 42 A K - 0 0 75 -2,-2.9 13,-0.7 2,-0.0 2,-0.4 -0.990 56.4-162.8-157.8 148.6 -10.4 -0.9 -6.8 43 43 A N E -B 54 0B 93 -2,-0.3 2,-0.3 11,-0.2 11,-0.3 -0.949 11.4-178.0-139.0 118.1 -10.6 -3.6 -4.0 44 44 A A E -B 53 0B 9 9,-3.0 9,-3.9 -2,-0.4 2,-0.2 -0.862 25.0-120.3-116.0 151.1 -11.1 -7.3 -4.7 45 45 A L E -B 52 0B 102 -2,-0.3 5,-0.1 7,-0.3 -2,-0.0 -0.548 24.2-135.8 -86.2 153.7 -11.4 -10.2 -2.2 46 46 A T E > -B 49 0B 18 5,-1.1 3,-1.0 3,-0.6 5,-0.4 -0.850 10.2-137.8-111.6 148.4 -9.0 -13.2 -2.2 47 47 A P T 3 S+ 0 0 122 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 0.667 103.5 64.0 -74.5 -16.7 -9.9 -16.8 -1.8 48 48 A S T 3 S+ 0 0 112 1,-0.2 2,-0.3 -3,-0.0 -3,-0.0 0.560 119.4 8.3 -84.3 -5.7 -6.9 -17.3 0.5 49 49 A S E < S-B 46 0B 81 -3,-1.0 2,-1.5 2,-0.1 -3,-0.6 -0.976 77.4-107.5-167.5 153.9 -8.5 -15.0 3.1 50 50 A K E S+ 0 0 188 -2,-0.3 -5,-0.0 -5,-0.1 0, 0.0 -0.571 79.2 98.9 -89.4 79.1 -11.7 -13.1 3.8 51 51 A K E S- 0 0 107 -2,-1.5 -5,-1.1 -5,-0.4 2,-0.8 -0.940 75.4-111.3-163.5 139.0 -10.7 -9.5 3.0 52 52 A P E -B 45 0B 70 0, 0.0 -7,-0.3 0, 0.0 2,-0.2 -0.592 37.2-160.0 -74.0 109.7 -10.9 -7.1 0.1 53 53 A V E -B 44 0B 20 -9,-3.9 -9,-3.0 -2,-0.8 2,-0.7 -0.629 18.8-118.2 -90.5 150.3 -7.4 -6.6 -1.2 54 54 A R E +B 43 0B 84 -11,-0.3 -25,-0.8 -2,-0.2 2,-0.3 -0.762 46.4 157.2 -90.4 118.5 -6.5 -3.5 -3.3 55 55 A V - 0 0 0 -13,-0.7 -27,-0.0 -2,-0.7 5,-0.0 -0.965 46.0 -93.0-138.0 155.5 -5.4 -4.5 -6.8 56 56 A C > - 0 0 7 -2,-0.3 4,-2.3 -23,-0.1 -16,-0.2 -0.286 46.9-102.5 -64.2 152.7 -5.2 -2.7 -10.2 57 57 A D H > S+ 0 0 72 -18,-0.9 4,-1.5 1,-0.2 -1,-0.1 0.915 120.8 61.3 -42.0 -51.9 -8.3 -3.2 -12.5 58 58 A A H >> S+ 0 0 62 1,-0.3 3,-1.8 2,-0.2 4,-1.2 0.939 107.4 41.5 -41.7 -66.4 -6.4 -5.7 -14.6 59 59 A C H 3> S+ 0 0 2 1,-0.3 4,-1.1 2,-0.2 3,-0.5 0.906 104.0 69.5 -51.3 -39.9 -5.8 -8.1 -11.6 60 60 A F H >X S+ 0 0 45 -4,-2.3 4,-1.6 1,-0.3 3,-0.5 0.874 100.3 48.0 -47.6 -37.0 -9.5 -7.4 -10.6 61 61 A N H << S+ 0 0 84 -3,-1.8 4,-0.4 -4,-1.5 -1,-0.3 0.878 103.5 59.6 -74.2 -35.6 -10.5 -9.3 -13.8 62 62 A D H 3< S+ 0 0 104 -4,-1.2 -1,-0.2 -3,-0.5 -2,-0.2 0.651 114.9 37.6 -67.5 -10.8 -8.1 -12.2 -12.9 63 63 A L H << S+ 0 0 58 -4,-1.1 -1,-0.2 -3,-0.5 -2,-0.2 0.667 111.3 55.1-112.0 -24.6 -10.0 -12.7 -9.7 64 64 A Q < 0 0 133 -4,-1.6 -2,-0.2 -5,-0.3 -3,-0.1 0.323 360.0 360.0 -91.2 11.1 -13.6 -12.0 -10.8 65 65 A G 0 0 123 -4,-0.4 -1,-0.2 -5,-0.1 -2,-0.1 0.724 360.0 360.0-104.6 360.0 -13.4 -14.6 -13.5