==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 30-JAN-01 1I11 . COMPND 2 MOLECULE: TRANSCRIPTION FACTOR SOX-5; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR P.D.CARY,C.M.READ,B.DAVIS,P.C.DRISCOLL,C.CRANE-ROBINSON . 70 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5898.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 72.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 15.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 48.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A P 0 0 133 0, 0.0 62,-0.1 0, 0.0 2,-0.1 0.000 360.0 360.0 360.0 -42.0 2.4 -8.5 -13.4 2 2 A H + 0 0 63 60,-0.1 2,-0.3 61,-0.1 64,-0.1 -0.365 360.0 117.2-117.8 54.7 -0.4 -9.4 -10.9 3 3 A I S S- 0 0 73 -2,-0.1 2,-2.1 60,-0.0 60,-0.1 -0.831 77.3-108.3-118.3 158.3 1.5 -8.9 -7.6 4 4 A K + 0 0 172 -2,-0.3 56,-0.1 59,-0.1 -2,-0.0 -0.201 61.9 159.0 -79.0 52.3 0.7 -6.4 -4.8 5 5 A R - 0 0 154 -2,-2.1 2,-2.3 1,-0.1 0, 0.0 -0.299 58.1 -94.8 -72.0 163.2 3.8 -4.4 -5.7 6 6 A P S S+ 0 0 112 0, 0.0 -1,-0.1 0, 0.0 2,-0.1 -0.431 79.9 129.4 -77.5 67.9 4.1 -0.7 -4.7 7 7 A M + 0 0 59 -2,-2.3 2,-0.3 49,-0.1 3,-0.1 -0.337 29.3 173.1-107.5-166.9 2.7 0.7 -7.9 8 8 A N > - 0 0 54 -2,-0.1 4,-2.6 1,-0.1 5,-0.3 -0.983 55.2 -62.4 177.7-179.4 -0.0 3.2 -8.5 9 9 A A H > S+ 0 0 0 -2,-0.3 4,-3.9 3,-0.2 5,-0.3 0.889 135.0 48.3 -53.3 -34.9 -1.8 5.3 -11.1 10 10 A F H >>S+ 0 0 49 2,-0.3 4,-5.0 1,-0.2 5,-0.5 0.993 115.8 37.8 -70.8 -61.3 1.5 6.9 -11.6 11 11 A M H >5S+ 0 0 102 1,-0.2 4,-0.5 2,-0.2 -1,-0.2 0.770 122.4 51.9 -61.3 -16.2 3.7 3.8 -11.9 12 12 A V H X5S+ 0 0 3 -4,-2.6 4,-0.5 2,-0.2 -2,-0.3 0.902 119.8 29.8 -83.7 -46.3 0.6 2.6 -13.7 13 13 A W H X5S+ 0 0 15 -4,-3.9 4,-2.4 -5,-0.3 3,-0.4 0.851 121.9 52.5 -80.6 -35.6 0.4 5.5 -16.1 14 14 A A H X5S+ 0 0 1 -4,-5.0 4,-3.8 -5,-0.3 5,-0.4 0.776 97.1 66.6 -72.2 -25.3 4.1 6.1 -16.1 15 15 A K H XX S+ 0 0 15 -4,-1.0 4,-2.7 -5,-0.2 3,-1.7 0.860 106.6 61.0 -96.0 -48.5 8.7 7.9 -23.8 22 22 A L H 3< S+ 0 0 42 -4,-4.7 -3,-0.2 1,-0.3 -2,-0.2 0.842 99.4 61.1 -48.0 -30.8 11.5 5.3 -23.9 23 23 A Q T 3< S+ 0 0 117 -4,-1.1 -1,-0.3 -5,-0.3 -2,-0.2 0.922 112.3 36.3 -62.9 -38.9 10.4 4.8 -27.5 24 24 A A T <4 S+ 0 0 56 -3,-1.7 -2,-0.3 -4,-0.3 -1,-0.2 0.716 134.8 28.6 -83.7 -22.4 11.3 8.4 -27.9 25 25 A F < + 0 0 90 -4,-2.7 3,-0.4 -7,-0.2 -1,-0.3 -0.570 65.4 166.8-140.8 73.6 14.2 8.0 -25.6 26 26 A P S S+ 0 0 104 0, 0.0 -4,-0.1 0, 0.0 -3,-0.1 0.514 83.7 50.2 -66.4 -4.6 15.4 4.4 -25.7 27 27 A D S S+ 0 0 152 -5,-0.1 2,-1.6 2,-0.1 5,-0.1 0.706 81.6 97.0-104.5 -27.6 18.5 5.5 -23.9 28 28 A M - 0 0 42 -3,-0.4 -3,-0.1 -6,-0.1 -1,-0.1 -0.398 65.9-171.5 -62.5 90.1 16.7 7.3 -21.1 29 29 A H >> - 0 0 109 -2,-1.6 4,-3.3 4,-0.1 3,-1.5 -0.062 40.2 -78.2 -77.4-175.3 16.9 4.4 -18.7 30 30 A N H 3> S+ 0 0 99 1,-0.3 4,-2.5 2,-0.2 5,-0.3 0.964 127.7 60.4 -50.9 -60.7 15.1 4.2 -15.3 31 31 A S H 34 S+ 0 0 94 1,-0.2 -1,-0.3 2,-0.2 4,-0.2 0.751 122.8 26.2 -42.9 -22.2 17.5 6.5 -13.4 32 32 A N H X> S+ 0 0 76 -3,-1.5 3,-1.4 2,-0.1 4,-1.3 0.804 115.8 54.7-109.8 -55.2 16.5 9.1 -16.0 33 33 A I H 3X S+ 0 0 1 -4,-3.3 4,-3.6 1,-0.3 5,-0.3 0.808 97.7 74.9 -51.8 -23.3 13.0 8.4 -17.3 34 34 A S H 3X S+ 0 0 64 -4,-2.5 4,-2.3 -5,-0.5 5,-0.3 0.952 97.7 41.3 -55.9 -49.7 12.1 8.4 -13.6 35 35 A K H <4 S+ 0 0 136 -3,-1.4 4,-0.4 -5,-0.3 -1,-0.3 0.803 114.8 56.2 -69.7 -23.0 12.3 12.2 -13.4 36 36 A I H X S+ 0 0 18 -4,-1.3 4,-1.6 2,-0.2 -2,-0.2 0.972 111.9 38.9 -70.7 -54.0 10.5 12.2 -16.7 37 37 A L H >X S+ 0 0 15 -4,-3.6 4,-4.0 2,-0.3 3,-0.9 0.983 117.8 47.1 -59.8 -59.6 7.5 10.2 -15.6 38 38 A G H 3X S+ 0 0 20 -4,-2.3 4,-1.1 1,-0.3 -1,-0.2 0.721 118.9 44.9 -58.7 -14.6 7.3 11.8 -12.1 39 39 A S H 34 S+ 0 0 68 -4,-0.4 -1,-0.3 -5,-0.3 -2,-0.3 0.641 113.6 48.0-101.4 -17.6 7.6 15.0 -14.1 40 40 A R H << S+ 0 0 93 -4,-1.6 -2,-0.2 -3,-0.9 -3,-0.2 0.774 111.7 53.2 -88.0 -28.8 5.1 13.9 -16.7 41 41 A W H >< S+ 0 0 33 -4,-4.0 3,-2.8 -5,-0.2 5,-0.3 0.981 110.3 42.0 -68.8 -59.3 2.8 12.8 -13.9 42 42 A K T 3< S+ 0 0 187 -4,-1.1 -1,-0.2 1,-0.3 -2,-0.2 0.772 109.9 64.2 -61.0 -18.9 2.7 16.1 -12.0 43 43 A A T 3 S+ 0 0 71 -6,-0.3 -1,-0.3 -4,-0.2 -2,-0.2 0.336 90.8 82.0 -85.5 8.9 2.5 17.5 -15.6 44 44 A M S < S- 0 0 34 -3,-2.8 -3,-0.1 1,-0.0 -2,-0.1 0.393 92.3-108.6 -86.8-133.8 -0.9 15.7 -15.9 45 45 A T - 0 0 93 -4,-0.1 2,-3.7 1,-0.0 -3,-0.1 0.300 27.5-128.2-147.2 9.3 -4.1 17.3 -14.6 46 46 A N S > S+ 0 0 113 -5,-0.3 3,-1.5 1,-0.2 -3,-0.0 -0.220 108.7 61.6 70.9 -59.2 -5.2 15.2 -11.6 47 47 A L G > S+ 0 0 121 -2,-3.7 3,-0.8 1,-0.3 -1,-0.2 0.761 93.9 63.6 -70.3 -20.4 -8.6 14.8 -13.1 48 48 A E G 3 S+ 0 0 101 1,-0.2 4,-0.5 2,-0.1 -1,-0.3 0.517 82.0 81.7 -80.6 -1.3 -7.0 13.0 -16.0 49 49 A K G <> + 0 0 17 -3,-1.5 4,-0.8 1,-0.2 -1,-0.2 0.260 59.1 105.3 -85.6 14.8 -5.9 10.3 -13.6 50 50 A Q H <> S+ 0 0 124 -3,-0.8 4,-1.7 2,-0.2 -1,-0.2 0.929 86.5 34.6 -60.4 -46.3 -9.4 8.7 -13.8 51 51 A P H > S+ 0 0 54 0, 0.0 4,-2.2 0, 0.0 5,-0.2 0.909 116.5 51.2 -77.8 -46.1 -8.2 5.8 -16.0 52 52 A Y H 4 S+ 0 0 63 -4,-0.5 4,-0.2 1,-0.2 -2,-0.2 0.686 110.5 56.9 -66.8 -11.2 -4.7 5.3 -14.5 53 53 A Y H >X S+ 0 0 107 -4,-0.8 3,-1.8 2,-0.2 4,-1.4 0.953 109.6 37.4 -83.8 -57.4 -6.6 5.2 -11.2 54 54 A E H 3X S+ 0 0 138 -4,-1.7 4,-2.1 1,-0.3 5,-0.2 0.832 107.8 68.5 -63.8 -26.7 -9.0 2.4 -11.8 55 55 A E H 3X S+ 0 0 100 -4,-2.2 4,-1.4 1,-0.2 -1,-0.3 0.743 100.3 50.4 -65.0 -16.8 -6.2 0.7 -13.8 56 56 A Q H <> S+ 0 0 61 -3,-1.8 4,-2.1 2,-0.2 5,-0.3 0.931 108.4 47.0 -84.5 -52.3 -4.5 0.3 -10.4 57 57 A A H X S+ 0 0 56 -4,-1.4 4,-1.6 2,-0.2 -2,-0.2 0.836 113.2 54.4 -58.7 -28.6 -7.4 -1.2 -8.5 58 58 A R H >X S+ 0 0 170 -4,-2.1 4,-3.1 2,-0.2 3,-0.6 0.993 108.5 43.2 -70.0 -61.6 -7.8 -3.6 -11.5 59 59 A L H 3X S+ 0 0 28 -4,-1.4 4,-0.9 1,-0.3 -2,-0.2 0.834 116.6 51.6 -54.7 -27.1 -4.3 -5.0 -11.6 60 60 A S H 3X S+ 0 0 49 -4,-2.1 4,-1.6 2,-0.2 -1,-0.3 0.848 110.5 47.3 -78.4 -31.3 -4.6 -5.2 -7.8 61 61 A K H X S+ 0 0 17 -4,-0.9 4,-1.1 -5,-0.3 3,-1.0 0.985 112.8 37.2 -73.1 -61.2 -3.6 -10.3 -8.2 64 64 A L H >< S+ 0 0 105 -4,-1.6 3,-1.2 1,-0.3 -2,-0.2 0.937 112.1 58.8 -58.8 -45.1 -5.8 -11.4 -5.3 65 65 A E T 3< S+ 0 0 128 -4,-2.0 -1,-0.3 1,-0.3 -2,-0.2 0.805 103.3 56.7 -55.1 -24.4 -8.4 -13.0 -7.6 66 66 A K T <4 S+ 0 0 122 -3,-1.0 -1,-0.3 -4,-0.5 -2,-0.2 0.827 102.8 56.3 -77.7 -31.2 -5.4 -15.1 -8.7 67 67 A Y << + 0 0 133 -3,-1.2 3,-0.3 -4,-1.1 -1,-0.2 -0.820 59.1 159.1-107.1 97.5 -4.7 -16.3 -5.2 68 68 A P S S+ 0 0 89 0, 0.0 2,-3.4 0, 0.0 -1,-0.2 0.955 70.2 56.5 -78.6 -60.3 -7.8 -18.0 -3.8 69 69 A D 0 0 138 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.183 360.0 360.0 -70.3 53.6 -6.3 -20.2 -1.1 70 70 A Y 0 0 226 -2,-3.4 -6,-0.0 -3,-0.3 0, 0.0 0.055 360.0 360.0 -71.3 360.0 -4.8 -17.1 0.5