==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-JUN-09 3I18 . COMPND 2 MOLECULE: LMO2051 PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; . AUTHOR F.FOROUHAR,S.LEW,J.SEETHARAMAN,J.JANJUA,R.XIAO,C.CICCOSANTI, . 95 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6049.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 64.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 28 29.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 8.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 13.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 8.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 2 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A V 0 0 201 0, 0.0 2,-0.2 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 125.4 33.1 29.1 35.2 2 3 A K - 0 0 175 1,-0.2 0, 0.0 0, 0.0 0, 0.0 -0.524 360.0 -67.6 -95.8 163.9 31.8 31.4 32.5 3 4 A V - 0 0 137 -2,-0.2 2,-0.3 1,-0.1 -1,-0.2 -0.080 59.8-107.4 -47.4 145.1 29.4 34.3 32.7 4 5 A T - 0 0 109 -3,-0.1 2,-0.6 2,-0.0 -1,-0.1 -0.633 23.9-155.1 -85.4 134.8 25.8 33.3 33.5 5 6 A Y - 0 0 92 -2,-0.3 3,-0.1 1,-0.1 34,-0.1 -0.945 8.3-174.2-108.5 116.4 23.1 33.4 30.9 6 7 A D - 0 0 91 -2,-0.6 2,-0.3 1,-0.3 -1,-0.1 0.777 45.9-103.6 -82.5 -27.7 19.6 33.8 32.4 7 8 A G - 0 0 8 31,-0.1 2,-0.4 29,-0.1 -1,-0.3 -0.991 53.9 -33.1 141.9-150.2 17.7 33.4 29.1 8 9 A V E -A 29 0A 5 21,-2.2 21,-3.1 -2,-0.3 2,-0.5 -0.930 45.7-141.8-115.8 133.5 15.8 35.7 26.7 9 10 A Y E -A 28 0A 98 -2,-0.4 80,-2.0 19,-0.2 2,-0.3 -0.806 19.6-129.4 -94.7 129.5 13.9 38.9 27.7 10 11 A V E +E 88 0B 3 17,-2.9 16,-2.6 -2,-0.5 78,-0.2 -0.581 26.8 176.4 -77.0 133.1 10.7 39.6 25.9 11 12 A X E + 0 0 78 76,-3.1 2,-0.3 1,-0.4 77,-0.2 0.659 66.8 3.9-109.7 -23.8 10.5 43.1 24.4 12 13 A S E -E 87 0B 50 75,-1.2 75,-2.1 12,-0.1 -1,-0.4 -0.964 57.5-156.3-161.1 147.7 7.2 42.9 22.6 13 14 A V E -E 86 0B 30 -2,-0.3 73,-0.2 73,-0.2 2,-0.1 -0.997 29.9-114.2-131.3 128.9 4.3 40.4 22.1 14 15 A K > - 0 0 65 71,-2.9 3,-0.9 -2,-0.4 6,-0.3 -0.439 22.9-143.3 -60.1 132.0 1.9 40.4 19.2 15 16 A D T 3 S+ 0 0 144 1,-0.2 -1,-0.1 -2,-0.1 70,-0.0 0.496 93.3 52.7 -78.4 -3.4 -1.6 41.2 20.6 16 17 A D T 3 S+ 0 0 123 69,-0.1 -1,-0.2 5,-0.0 -2,-0.1 0.037 93.7 83.6-120.6 26.4 -3.4 38.8 18.3 17 18 A V S X S- 0 0 16 -3,-0.9 3,-1.8 68,-0.1 4,-0.4 -0.869 89.3-104.1-125.9 160.2 -1.5 35.6 18.9 18 19 A P G > S+ 0 0 62 0, 0.0 3,-2.1 0, 0.0 4,-0.1 0.850 116.6 66.2 -50.6 -37.2 -1.7 32.8 21.5 19 20 A A G >> S+ 0 0 0 65,-0.6 4,-2.3 53,-0.3 3,-2.1 0.823 88.1 67.5 -55.5 -32.1 1.4 34.2 23.2 20 21 A A G <4 S+ 0 0 34 -3,-1.8 -1,-0.3 -6,-0.3 -5,-0.1 0.682 94.4 58.2 -63.5 -16.6 -0.5 37.4 24.1 21 22 A D G <4 S+ 0 0 153 -3,-2.1 -1,-0.3 -4,-0.4 -2,-0.2 0.373 122.4 21.3 -93.9 4.3 -2.6 35.3 26.5 22 23 A V T <4 S+ 0 0 28 -3,-2.1 -2,-0.2 1,-0.2 2,-0.1 0.594 112.3 55.4-132.1 -58.2 0.5 34.2 28.4 23 24 A L < - 0 0 2 -4,-2.3 2,-0.3 4,-0.0 -1,-0.2 -0.429 54.3-166.7 -88.5 160.7 3.6 36.4 28.0 24 25 A H > - 0 0 102 -2,-0.1 3,-2.0 -3,-0.1 -14,-0.2 -0.957 39.1 -81.6-140.7 157.0 4.1 40.1 28.6 25 26 A A T 3 S+ 0 0 69 -2,-0.3 -14,-0.2 1,-0.2 3,-0.1 -0.380 116.8 30.7 -60.4 132.5 6.8 42.6 27.8 26 27 A G T 3 S+ 0 0 52 -16,-2.6 -1,-0.2 1,-0.4 -15,-0.1 0.130 85.6 133.5 104.8 -19.9 9.6 42.3 30.3 27 28 A D < - 0 0 5 -3,-2.0 -17,-2.9 -18,-0.1 2,-0.6 -0.285 50.6-135.6 -65.0 148.7 9.2 38.6 31.0 28 29 A L E -AB 9 61A 7 33,-1.4 33,-2.0 -19,-0.2 2,-0.6 -0.938 9.6-150.7-109.5 122.1 12.3 36.4 31.0 29 30 A I E +AB 8 60A 0 -21,-3.1 -21,-2.2 -2,-0.6 31,-0.3 -0.835 20.3 171.6 -93.8 121.8 12.1 33.1 29.3 30 31 A T E + 0 0 51 29,-2.4 7,-0.5 -2,-0.6 2,-0.3 0.716 61.1 16.1-102.3 -26.9 14.4 30.5 30.9 31 32 A E E - B 0 59A 68 28,-1.3 28,-2.3 5,-0.2 2,-0.4 -0.996 52.9-161.4-150.0 148.9 13.4 27.3 29.2 32 33 A I E > S-CB 35 58A 7 3,-2.3 3,-1.1 -2,-0.3 26,-0.2 -0.997 83.0 -4.1-133.5 126.0 11.6 26.0 26.2 33 34 A D T 3 S- 0 0 43 24,-2.7 25,-0.1 -2,-0.4 -1,-0.1 0.858 132.0 -54.1 58.3 40.8 10.3 22.4 25.9 34 35 A G T 3 S+ 0 0 33 23,-0.4 2,-0.4 1,-0.2 -1,-0.2 0.523 117.5 100.4 76.3 9.2 12.0 21.5 29.2 35 36 A N B < -C 32 0A 107 -3,-1.1 -3,-2.3 0, 0.0 2,-0.3 -0.959 65.9-130.5-132.1 145.1 15.4 22.7 28.3 36 37 A A - 0 0 57 -2,-0.4 2,-0.3 -5,-0.2 -5,-0.2 -0.702 24.3-148.9 -88.9 142.0 17.6 25.8 29.0 37 38 A F - 0 0 9 -7,-0.5 3,-0.1 -2,-0.3 -32,-0.0 -0.737 10.2-142.2-108.0 158.6 19.2 27.4 26.0 38 39 A K S S+ 0 0 154 -2,-0.3 2,-0.3 1,-0.2 3,-0.1 0.315 76.9 11.9-106.0 11.0 22.5 29.2 26.0 39 40 A S S > S- 0 0 42 1,-0.1 4,-2.1 -34,-0.1 -1,-0.2 -0.963 73.2-106.6-174.7 160.3 21.7 32.0 23.6 40 41 A S H > S+ 0 0 8 -2,-0.3 4,-2.9 1,-0.2 5,-0.2 0.871 119.4 57.7 -64.0 -34.7 19.0 33.8 21.7 41 42 A Q H > S+ 0 0 110 2,-0.2 4,-3.1 1,-0.2 -1,-0.2 0.915 106.9 45.4 -62.0 -44.6 20.3 32.1 18.5 42 43 A E H > S+ 0 0 89 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.901 112.9 52.1 -65.6 -40.1 19.8 28.6 20.0 43 44 A F H X S+ 0 0 0 -4,-2.1 4,-1.8 2,-0.2 -2,-0.2 0.941 114.1 42.4 -60.2 -47.8 16.4 29.6 21.3 44 45 A I H X S+ 0 0 12 -4,-2.9 4,-2.6 1,-0.2 -2,-0.2 0.926 111.5 54.3 -66.7 -45.6 15.4 30.8 17.8 45 46 A D H X S+ 0 0 99 -4,-3.1 4,-0.8 1,-0.2 -1,-0.2 0.907 107.9 51.9 -54.4 -43.0 16.9 27.9 16.0 46 47 A Y H >< S+ 0 0 66 -4,-2.3 3,-1.0 2,-0.2 4,-0.3 0.934 108.6 48.5 -60.7 -47.5 14.9 25.6 18.2 47 48 A I H >< S+ 0 0 0 -4,-1.8 3,-2.1 1,-0.3 -1,-0.2 0.928 109.1 54.4 -58.8 -45.1 11.6 27.3 17.4 48 49 A H H 3< S+ 0 0 84 -4,-2.6 -1,-0.3 1,-0.3 -2,-0.2 0.673 98.0 64.3 -63.8 -17.6 12.4 27.2 13.7 49 50 A S T << S+ 0 0 81 -3,-1.0 -1,-0.3 -4,-0.8 -2,-0.2 0.517 98.9 70.6 -83.0 -4.5 13.0 23.4 14.0 50 51 A K S < S- 0 0 66 -3,-2.1 2,-0.3 -4,-0.3 -3,-0.0 -0.294 83.9-110.8 -99.7-172.4 9.3 23.1 14.8 51 52 A K > - 0 0 144 -2,-0.1 3,-2.4 30,-0.1 22,-0.3 -0.905 33.3 -94.3-124.1 151.1 6.1 23.6 12.8 52 53 A V T 3 S+ 0 0 71 -2,-0.3 22,-0.2 28,-0.3 3,-0.1 -0.372 116.6 32.9 -57.0 137.1 3.4 26.2 12.8 53 54 A G T 3 S+ 0 0 39 20,-2.1 -1,-0.3 1,-0.4 21,-0.1 0.215 90.5 125.4 97.6 -18.0 0.7 24.8 15.1 54 55 A D < - 0 0 51 -3,-2.4 19,-3.1 18,-0.1 2,-0.4 -0.279 58.3-125.2 -70.2 163.9 3.1 22.9 17.3 55 56 A T E - D 0 72A 74 17,-0.2 2,-0.4 -3,-0.1 17,-0.2 -0.940 21.1-165.0-115.7 131.9 3.0 23.6 21.1 56 57 A V E - D 0 71A 1 15,-2.6 15,-2.3 -2,-0.4 2,-0.6 -0.939 18.3-131.5-117.4 141.8 6.0 24.7 23.1 57 58 A K E - D 0 70A 79 -2,-0.4 -24,-2.7 13,-0.2 2,-0.5 -0.810 27.0-162.9 -91.0 124.1 6.3 24.6 26.9 58 59 A I E -BD 32 69A 0 11,-3.2 11,-2.1 -2,-0.6 2,-0.5 -0.936 13.0-165.9-115.9 125.1 7.6 27.9 28.2 59 60 A N E +BD 31 68A 33 -28,-2.3 -29,-2.4 -2,-0.5 -28,-1.3 -0.937 29.6 153.5-104.6 125.2 9.1 28.5 31.6 60 61 A Y E -BD 29 67A 20 7,-1.9 7,-3.4 -2,-0.5 2,-0.5 -0.972 42.4-119.9-149.1 161.8 9.3 32.3 32.4 61 62 A K E -BD 28 66A 83 -33,-2.0 -33,-1.4 -2,-0.3 2,-0.6 -0.920 21.1-167.5-109.0 128.8 9.3 34.7 35.2 62 63 A H E > - D 0 65A 82 3,-2.7 2,-1.5 -2,-0.5 3,-0.6 -0.953 66.5 -46.5-117.4 109.2 6.6 37.4 35.4 63 64 A G T 3 S- 0 0 69 -2,-0.6 -2,-0.1 1,-0.2 3,-0.0 -0.524 128.6 -18.2 72.2 -92.0 7.3 40.1 37.9 64 65 A D T 3 S+ 0 0 133 -2,-1.5 2,-0.3 1,-0.0 -1,-0.2 -0.104 120.3 82.1-140.8 37.1 8.4 38.1 40.8 65 66 A K E < -D 62 0A 117 -3,-0.6 -3,-2.7 2,-0.0 2,-0.8 -0.990 69.5-129.3-147.9 136.1 7.1 34.6 40.1 66 67 A N E -D 61 0A 137 -2,-0.3 -5,-0.3 -5,-0.2 2,-0.2 -0.754 38.2-178.3 -86.7 110.1 8.3 31.7 37.9 67 68 A E E -D 60 0A 81 -7,-3.4 -7,-1.9 -2,-0.8 2,-0.3 -0.500 15.8-156.8-105.0 173.3 5.5 30.6 35.7 68 69 A Q E +D 59 0A 117 -9,-0.2 2,-0.3 -2,-0.2 -9,-0.2 -0.981 21.2 149.9-151.3 137.3 5.0 27.9 33.1 69 70 A A E -D 58 0A 27 -11,-2.1 -11,-3.2 -2,-0.3 2,-0.3 -0.989 39.9-109.1-164.3 159.8 2.6 27.6 30.2 70 71 A D E -D 57 0A 108 -2,-0.3 2,-0.4 -13,-0.2 -13,-0.2 -0.742 28.5-167.8 -95.5 143.6 2.1 26.1 26.8 71 72 A I E -D 56 0A 3 -15,-2.3 -15,-2.6 -2,-0.3 2,-0.4 -0.999 17.5-132.7-134.1 131.6 2.0 28.4 23.7 72 73 A K E -D 55 0A 113 -2,-0.4 -53,-0.3 -17,-0.2 -17,-0.2 -0.679 27.1-122.4 -83.6 136.3 0.9 27.4 20.2 73 74 A L - 0 0 3 -19,-3.1 -20,-2.1 -2,-0.4 2,-0.2 -0.533 30.6-172.7 -79.0 144.0 3.3 28.5 17.5 74 75 A T E -F 83 0C 45 9,-2.7 9,-2.1 -2,-0.2 2,-0.5 -0.662 36.6 -81.2-124.7 179.4 2.0 30.6 14.7 75 76 A A E -F 82 0C 47 -2,-0.2 6,-0.1 7,-0.2 3,-0.1 -0.755 36.6-174.3 -86.1 129.3 3.4 31.9 11.4 76 77 A I + 0 0 26 5,-3.1 19,-0.4 -2,-0.5 2,-0.3 0.453 65.3 25.5-103.9 0.4 5.7 34.9 12.0 77 78 A D S > S- 0 0 61 4,-0.5 3,-2.2 17,-0.1 -1,-0.1 -0.979 85.7 -99.5-154.5 164.8 6.4 35.7 8.3 78 79 A K T 3 S+ 0 0 189 -2,-0.3 -3,-0.0 1,-0.3 -1,-0.0 0.644 117.8 63.4 -62.0 -13.4 5.0 35.4 4.8 79 80 A K T 3 S- 0 0 164 2,-0.0 -1,-0.3 0, 0.0 -4,-0.0 0.471 117.8-108.7 -89.6 -3.3 7.3 32.4 4.3 80 81 A G < + 0 0 37 -3,-2.2 -28,-0.3 1,-0.2 -2,-0.1 0.637 54.8 169.0 88.0 14.6 5.7 30.4 7.0 81 82 A T - 0 0 31 -4,-0.1 -5,-3.1 -6,-0.1 -4,-0.5 -0.418 36.3-119.8 -63.2 129.6 8.5 30.5 9.6 82 83 A P E +F 75 0C 15 0, 0.0 2,-0.3 0, 0.0 -7,-0.2 -0.422 44.9 158.5 -71.2 146.3 7.2 29.2 13.0 83 84 A G E -F 74 0C 0 -9,-2.1 -9,-2.7 13,-0.2 13,-0.1 -0.990 52.3-126.8-163.5 161.8 7.3 31.6 15.9 84 85 A I - 0 0 1 -2,-0.3 -65,-0.6 -11,-0.2 -1,-0.1 0.792 60.1-112.3 -81.1 -30.8 5.9 32.5 19.3 85 86 A G S S+ 0 0 0 11,-2.8 -71,-2.9 1,-0.3 2,-0.3 0.809 74.1 113.9 100.7 42.9 5.1 36.0 18.1 86 87 A I E -E 13 0B 0 10,-2.4 10,-3.3 -73,-0.2 2,-0.3 -0.925 56.3-133.2-139.6 160.6 7.5 38.1 20.1 87 88 A T E -E 12 0B 17 -75,-2.1 -76,-3.1 -2,-0.3 -75,-1.2 -0.864 25.9-142.3-111.5 151.9 10.6 40.3 19.7 88 89 A L E > -E 10 0B 0 -2,-0.3 3,-1.8 -78,-0.2 4,-0.4 -0.833 21.2-120.1-116.0 153.8 13.6 39.9 22.0 89 90 A V G > S+ 0 0 72 -80,-2.0 3,-1.6 -2,-0.3 -79,-0.1 0.811 112.4 66.0 -59.8 -28.4 15.9 42.4 23.6 90 91 A D G 3 S+ 0 0 107 -81,-0.3 -1,-0.3 1,-0.3 -82,-0.0 0.745 83.7 74.5 -65.7 -22.6 18.8 40.7 21.7 91 92 A D G < 0 0 71 -3,-1.8 -1,-0.3 1,-0.3 -2,-0.2 0.776 360.0 360.0 -61.5 -24.7 17.2 41.9 18.5 92 93 A L < 0 0 162 -3,-1.6 -1,-0.3 -4,-0.4 -2,-0.2 0.778 360.0 360.0 -69.0 360.0 18.5 45.4 19.4 93 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 94 98 A H 0 0 216 0, 0.0 2,-0.3 0, 0.0 -17,-0.1 0.000 360.0 360.0 360.0 126.2 10.6 40.7 12.2 95 99 A H 0 0 50 -19,-0.4 -8,-0.2 -8,-0.1 -19,-0.1 -0.839 360.0 360.0-124.2 162.1 9.3 38.5 15.1 96 100 A H 0 0 28 -10,-3.3 -11,-2.8 -2,-0.3 -10,-2.4 -0.683 360.0 360.0-115.7 360.0 10.5 35.3 16.7