==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 07-FEB-01 1I27 . COMPND 2 MOLECULE: TRANSCRIPTION FACTOR IIF; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.KAMADA,J.DE ANGELIS,R.G.ROEDER,S.K.BURLEY . 73 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5305.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 63.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 11.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 27 37.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 445 A G > 0 0 76 0, 0.0 3,-1.7 0, 0.0 4,-0.1 0.000 360.0 360.0 360.0-179.1 7.5 41.4 11.0 2 446 A P G > - 0 0 105 0, 0.0 3,-2.2 0, 0.0 4,-0.0 -0.265 360.0 -0.5 -57.5 139.3 5.2 44.4 11.7 3 447 A L G 3 S- 0 0 188 1,-0.3 3,-0.1 2,-0.0 0, 0.0 0.663 135.0 -55.3 58.3 23.1 2.2 44.8 9.3 4 448 A G G < S+ 0 0 29 -3,-1.7 -1,-0.3 1,-0.3 2,-0.1 0.484 101.1 137.8 89.8 3.7 3.3 41.7 7.3 5 449 A S < + 0 0 60 -3,-2.2 -1,-0.3 -4,-0.1 2,-0.3 -0.335 22.1 134.6 -68.4 158.2 6.9 43.0 6.7 6 450 A G - 0 0 32 -3,-0.1 27,-0.1 31,-0.1 2,-0.1 -0.917 59.3 -52.2 169.6 168.8 9.5 40.4 7.1 7 451 A D - 0 0 21 25,-0.7 27,-0.4 -2,-0.3 30,-0.1 -0.382 35.5-173.6 -63.4 139.9 12.5 39.0 5.4 8 452 A V S S+ 0 0 85 1,-0.1 2,-0.3 30,-0.1 -1,-0.1 0.461 73.3 46.7-109.4 -5.7 12.1 38.1 1.7 9 453 A Q S S- 0 0 135 2,-0.0 2,-0.8 30,-0.0 -1,-0.1 -0.968 77.0-132.8-129.6 149.4 15.5 36.6 1.3 10 454 A V + 0 0 15 -2,-0.3 2,-0.3 28,-0.1 3,-0.0 -0.898 49.2 151.4-102.9 103.8 17.3 34.1 3.6 11 455 A T > - 0 0 42 -2,-0.8 4,-2.5 1,-0.1 5,-0.2 -0.912 61.4-113.3-134.7 159.6 20.8 35.5 4.0 12 456 A E H > S+ 0 0 59 -2,-0.3 4,-3.0 1,-0.2 5,-0.2 0.895 117.6 56.5 -55.5 -44.3 23.7 35.7 6.4 13 457 A D H > S+ 0 0 102 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.912 108.9 45.8 -57.0 -43.8 23.0 39.5 6.8 14 458 A A H > S+ 0 0 0 2,-0.2 4,-1.8 1,-0.2 -2,-0.2 0.929 113.9 47.3 -67.1 -44.0 19.5 38.7 7.9 15 459 A V H X S+ 0 0 0 -4,-2.5 4,-2.8 1,-0.2 5,-0.2 0.919 110.1 54.2 -62.9 -41.0 20.5 36.0 10.3 16 460 A R H X S+ 0 0 99 -4,-3.0 4,-1.8 1,-0.2 -1,-0.2 0.910 104.6 54.6 -59.8 -43.7 23.2 38.2 11.7 17 461 A R H X S+ 0 0 129 -4,-2.0 4,-0.7 -5,-0.2 -1,-0.2 0.928 113.3 42.2 -56.1 -45.7 20.7 40.9 12.4 18 462 A Y H >X S+ 0 0 28 -4,-1.8 4,-1.5 1,-0.2 3,-0.9 0.930 114.0 49.2 -68.5 -45.1 18.6 38.5 14.5 19 463 A L H 3< S+ 0 0 0 -4,-2.8 52,-2.6 1,-0.3 53,-0.4 0.690 105.4 57.8 -73.8 -18.7 21.4 36.8 16.3 20 464 A T H 3< S+ 0 0 70 -4,-1.8 -1,-0.3 -5,-0.2 -2,-0.2 0.702 106.4 51.9 -78.5 -19.7 23.0 40.1 17.4 21 465 A R H << S- 0 0 150 -3,-0.9 -2,-0.2 -4,-0.7 -1,-0.1 0.885 128.4 -28.1 -80.1 -42.6 19.7 41.0 19.1 22 466 A K S < S- 0 0 120 -4,-1.5 -1,-0.3 47,-0.1 49,-0.1 -0.964 74.5 -79.3-167.1 156.2 19.3 37.8 21.2 23 467 A P - 0 0 40 0, 0.0 2,-0.3 0, 0.0 47,-0.2 -0.414 52.2-176.9 -64.5 142.6 20.2 34.1 21.2 24 468 A M B -A 69 0A 6 45,-2.2 45,-3.0 -2,-0.1 2,-0.1 -0.995 21.8-133.0-143.2 145.8 18.0 32.0 19.0 25 469 A T > - 0 0 12 -2,-0.3 4,-2.4 43,-0.2 5,-0.2 -0.379 39.0-101.3 -83.9 172.2 17.5 28.3 18.1 26 470 A T H > S+ 0 0 70 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.925 125.8 52.4 -59.1 -42.0 17.1 27.1 14.5 27 471 A K H > S+ 0 0 147 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.915 108.5 51.1 -59.8 -42.4 13.3 26.8 15.1 28 472 A D H > S+ 0 0 61 1,-0.2 4,-0.5 2,-0.2 -1,-0.2 0.920 111.3 47.4 -61.4 -43.8 13.3 30.4 16.2 29 473 A L H >< S+ 0 0 0 -4,-2.4 3,-1.6 1,-0.2 4,-0.5 0.896 105.0 59.0 -65.6 -40.3 15.2 31.6 13.2 30 474 A L H >< S+ 0 0 52 -4,-2.7 3,-1.5 1,-0.3 -1,-0.2 0.859 96.4 62.9 -58.8 -33.4 12.9 29.6 10.8 31 475 A K H 3< S+ 0 0 140 -4,-1.5 -1,-0.3 1,-0.3 -2,-0.2 0.777 98.4 57.1 -62.4 -22.9 9.9 31.6 12.1 32 476 A K T << S+ 0 0 78 -3,-1.6 -25,-0.7 -4,-0.5 2,-0.6 0.624 100.5 60.4 -80.5 -15.2 11.6 34.8 10.7 33 477 A F S < S- 0 0 6 -3,-1.5 2,-0.3 -4,-0.5 -1,-0.2 -0.815 75.7-176.5-119.4 88.0 11.8 33.4 7.2 34 478 A Q >> - 0 0 96 -2,-0.6 4,-2.6 -27,-0.4 3,-2.1 -0.686 32.9-134.3 -95.4 137.1 8.3 32.7 6.0 35 479 A T H 3> S+ 0 0 69 -2,-0.3 4,-2.4 1,-0.3 -1,-0.1 0.832 105.6 64.9 -53.9 -36.0 7.2 31.1 2.7 36 480 A K H 34 S+ 0 0 174 1,-0.2 -1,-0.3 2,-0.2 -28,-0.0 0.740 115.1 30.8 -60.9 -23.5 4.6 33.8 2.3 37 481 A K H <4 S+ 0 0 77 -3,-2.1 -2,-0.2 -30,-0.1 -1,-0.2 0.767 130.1 32.5 -99.1 -39.8 7.4 36.4 2.1 38 482 A T H < S- 0 0 25 -4,-2.6 -3,-0.2 2,-0.2 -2,-0.2 0.745 85.9-136.5 -91.8 -28.3 10.3 34.5 0.5 39 483 A G < + 0 0 60 -4,-2.4 2,-0.3 -5,-0.3 -4,-0.1 0.463 63.7 126.7 76.4 3.7 8.5 32.0 -1.8 40 484 A L - 0 0 57 -6,-0.2 -1,-0.3 1,-0.1 -2,-0.2 -0.719 61.8-118.7 -92.7 143.2 10.9 29.3 -0.6 41 485 A S > - 0 0 47 -2,-0.3 4,-2.5 -3,-0.1 5,-0.2 -0.234 30.1-105.1 -67.5 166.6 9.6 26.0 0.8 42 486 A S H > S+ 0 0 92 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.900 123.5 51.5 -61.1 -38.1 10.4 25.0 4.4 43 487 A E H > S+ 0 0 118 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.940 110.8 46.6 -64.3 -46.8 12.9 22.5 3.0 44 488 A Q H > S+ 0 0 100 1,-0.2 4,-2.0 2,-0.2 5,-0.2 0.889 114.3 49.6 -60.3 -38.4 14.7 25.1 0.9 45 489 A T H X S+ 0 0 2 -4,-2.5 4,-2.5 2,-0.2 -2,-0.2 0.945 110.7 46.4 -69.7 -47.4 14.7 27.5 3.9 46 490 A V H X S+ 0 0 49 -4,-2.7 4,-2.4 1,-0.2 -1,-0.2 0.893 111.4 54.3 -62.6 -37.2 16.1 25.1 6.4 47 491 A N H X S+ 0 0 87 -4,-2.2 4,-1.7 -5,-0.2 -1,-0.2 0.947 112.0 41.1 -66.9 -43.7 18.8 24.0 4.0 48 492 A V H X S+ 0 0 53 -4,-2.0 4,-2.7 2,-0.2 -1,-0.2 0.893 112.5 55.9 -74.1 -32.8 20.1 27.5 3.3 49 493 A L H X S+ 0 0 6 -4,-2.5 4,-2.8 -5,-0.2 5,-0.2 0.925 105.9 52.2 -58.5 -40.3 19.8 28.4 7.0 50 494 A A H X S+ 0 0 57 -4,-2.4 4,-2.4 1,-0.2 -1,-0.2 0.908 109.8 48.6 -60.9 -41.6 22.0 25.5 7.7 51 495 A Q H X S+ 0 0 91 -4,-1.7 4,-2.0 2,-0.2 -2,-0.2 0.916 111.9 49.4 -61.5 -45.8 24.6 26.7 5.2 52 496 A I H X S+ 0 0 6 -4,-2.7 4,-2.8 1,-0.2 -2,-0.2 0.926 113.0 45.5 -60.9 -46.0 24.4 30.2 6.7 53 497 A L H X S+ 0 0 16 -4,-2.8 4,-2.4 2,-0.2 -1,-0.2 0.889 109.6 54.3 -69.2 -38.9 24.9 29.0 10.3 54 498 A K H < S+ 0 0 167 -4,-2.4 -1,-0.2 -5,-0.2 -2,-0.2 0.921 115.2 41.2 -58.9 -42.6 27.8 26.6 9.4 55 499 A R H < S+ 0 0 148 -4,-2.0 -2,-0.2 1,-0.2 -1,-0.2 0.946 116.5 46.4 -71.4 -48.0 29.6 29.5 7.8 56 500 A L H < S- 0 0 24 -4,-2.8 -1,-0.2 -5,-0.2 -2,-0.2 0.827 85.2-162.6 -62.4 -35.2 28.8 32.2 10.4 57 501 A N < - 0 0 109 -4,-2.4 -3,-0.1 -5,-0.2 3,-0.1 0.918 15.5-163.7 47.8 57.1 29.7 29.7 13.2 58 502 A P - 0 0 5 0, 0.0 13,-0.2 0, 0.0 -1,-0.1 -0.261 28.7 -84.9 -68.3 157.4 27.9 31.7 15.9 59 503 A E E -B 70 0A 93 11,-1.2 11,-2.2 10,-0.1 2,-0.4 -0.301 41.7-127.8 -59.1 137.6 28.6 31.1 19.5 60 504 A R E -B 69 0A 149 9,-0.2 2,-0.4 -3,-0.1 9,-0.2 -0.747 27.4-174.6 -85.5 133.4 26.6 28.3 21.1 61 505 A K E -B 68 0A 73 7,-3.0 7,-2.6 -2,-0.4 2,-0.6 -0.990 20.3-135.4-130.9 129.8 24.7 29.3 24.2 62 506 A M E +B 67 0A 128 -2,-0.4 2,-0.4 5,-0.2 5,-0.2 -0.722 32.5 164.6 -88.5 119.1 22.8 26.8 26.3 63 507 A I E > S-B 66 0A 61 3,-2.2 3,-1.2 -2,-0.6 -2,-0.1 -0.998 71.8 -4.4-132.4 130.6 19.4 28.1 27.4 64 508 A N T 3 S- 0 0 143 -2,-0.4 3,-0.1 1,-0.3 -1,-0.1 0.826 127.5 -63.1 54.4 34.7 16.7 25.9 28.7 65 509 A D T 3 S+ 0 0 164 1,-0.2 2,-0.4 0, 0.0 -1,-0.3 0.822 117.0 110.0 60.9 33.3 18.9 22.9 28.0 66 510 A K E < S- B 0 63A 124 -3,-1.2 -3,-2.2 -5,-0.1 2,-0.4 -0.997 75.1-111.2-139.6 133.0 18.8 23.7 24.3 67 511 A M E - B 0 62A 80 -2,-0.4 2,-0.3 -5,-0.2 -5,-0.2 -0.517 36.8-178.0 -66.0 124.5 21.6 25.1 22.0 68 512 A H E - B 0 61A 21 -7,-2.6 -7,-3.0 -2,-0.4 2,-0.4 -0.832 21.8-129.1-111.5 153.3 20.9 28.6 20.9 69 513 A F E -AB 24 60A 34 -45,-3.0 -45,-2.2 -2,-0.3 2,-0.4 -0.861 28.8-175.2-100.8 144.1 23.1 30.6 18.6 70 514 A S E + B 0 59A 1 -11,-2.2 -11,-1.2 -2,-0.4 -50,-0.2 -0.990 35.2 179.6-147.0 136.6 24.2 34.1 19.5 71 515 A L S S+ 0 0 50 -52,-2.6 2,-0.5 -2,-0.4 -51,-0.2 0.133 73.2 88.7-109.5 16.2 26.2 37.0 18.1 72 516 A K 0 0 96 -53,-0.4 -51,-0.1 1,-0.2 -52,-0.0 -0.968 360.0 360.0-115.5 123.3 25.6 38.9 21.3 73 517 A E 0 0 196 -2,-0.5 -1,-0.2 -53,-0.1 -2,-0.1 0.885 360.0 360.0 55.3 360.0 28.1 38.7 24.2