==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA/ANTIBIOTIC 17-FEB-01 1I3W . COMPND 2 MOLECULE: 5'-D(*C*GP*AP*TP*CP*GP*AP*(BRU)P*CP*GP)-3'; . SOURCE 2 SYNTHETIC: YES; . AUTHOR H.ROBINSON,Y.-G.GAO,X.-L.YANG,R.SANISHVILI,A.JOACHIMIAK,A.H. . 40 8 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4024.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 9 22.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 20.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 E T > 0 0 79 0, 0.0 3,-0.7 0, 0.0 7,-0.3 0.000 360.0 360.0 360.0 132.9 40.0 0.2 20.0 2 2 E X B 3 -A 8 0A 78 6,-2.3 6,-2.2 1,-0.3 2,-0.1 -0.728 360.0 -55.4 108.5-121.3 40.8 -3.5 20.6 3 3 E P T 3 S+ 0 0 107 0, 0.0 -1,-0.3 0, 0.0 2,-0.1 0.214 132.0 21.9 -96.5 150.2 39.5 -4.4 22.9 4 4 E X < 0 0 63 -3,-0.7 -2,-0.1 -2,-0.1 4,-0.0 0.579 360.0 360.0-123.5-151.1 40.6 -2.4 24.4 5 5 E X 0 0 178 -3,-0.1 -3,-0.2 -2,-0.1 0, 0.0 0.955 360.0 360.0 51.3 360.0 42.3 1.0 24.1 6 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 7 7 E T 0 0 81 0, 0.0 3,-0.3 0, 0.0 4,-0.2 0.000 360.0 360.0 360.0 164.2 37.0 -3.1 18.6 8 8 E X B -A 2 0A 85 -6,-2.2 -6,-2.3 3,-0.4 2,-0.1 -0.377 360.0 -64.6 74.6-126.1 39.9 -2.8 16.2 9 9 E P S S+ 0 0 99 0, 0.0 -1,-0.3 0, 0.0 2,-0.1 0.102 129.8 24.6-102.8 155.3 39.4 -0.2 14.9 10 10 E X 0 0 66 -3,-0.3 -2,-0.1 -2,-0.1 -8,-0.0 0.577 360.0 360.0-113.9-166.8 37.1 -0.7 13.6 11 11 E X 0 0 173 -4,-0.2 -3,-0.4 -3,-0.1 -9,-0.0 0.997 360.0 360.0 53.8 360.0 34.5 -3.3 14.6 12 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 13 1 F T 0 0 80 0, 0.0 3,-0.3 0, 0.0 4,-0.2 0.000 360.0 360.0 360.0 165.9 25.3 10.2 -6.6 14 2 F X B -B 20 0B 82 6,-2.4 6,-2.4 3,-0.4 3,-0.1 -0.548 360.0 -75.1 70.7-106.2 21.7 9.5 -7.4 15 3 F P S S+ 0 0 98 0, 0.0 -1,-0.3 0, 0.0 2,-0.1 0.442 129.8 37.7 -75.1 143.3 21.8 7.8 -9.7 16 4 F X 0 0 67 -3,-0.3 4,-0.1 -2,-0.1 -2,-0.0 0.466 360.0 360.0-113.3-167.5 22.5 9.8 -11.4 17 5 F X 0 0 175 -4,-0.2 -3,-0.4 -2,-0.1 3,-0.0 0.906 360.0 360.0 52.0 360.0 24.8 12.7 -10.5 18 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 19 7 F T 0 0 75 0, 0.0 3,-0.4 0, 0.0 -5,-0.2 0.000 360.0 360.0 360.0 151.7 24.2 5.9 -5.7 20 8 F X B -B 14 0B 79 -6,-2.4 -6,-2.4 1,-0.3 2,-0.1 -0.586 360.0 -62.1 93.7-118.9 23.1 8.4 -3.1 21 9 F P S S+ 0 0 101 0, 0.0 -1,-0.3 0, 0.0 2,-0.1 0.254 132.1 25.3 -90.5 154.6 25.6 9.2 -1.7 22 10 F X 0 0 71 -3,-0.4 -8,-0.0 -2,-0.1 -2,-0.0 0.706 360.0 360.0-104.9-167.5 26.3 6.6 -0.6 23 11 F X 0 0 178 -3,-0.1 -3,-0.3 -2,-0.1 0, 0.0 0.950 360.0 360.0 49.1 360.0 25.3 3.2 -2.0 24 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 25 1 G T 0 0 81 0, 0.0 3,-0.4 0, 0.0 7,-0.2 0.000 360.0 360.0 360.0 159.9 30.8 20.5 20.1 26 2 G X B -C 32 0C 80 6,-2.8 6,-2.1 3,-0.3 2,-0.1 -0.399 360.0 -60.9 84.7-134.7 29.5 23.9 21.0 27 3 G P S S+ 0 0 107 0, 0.0 -1,-0.3 0, 0.0 2,-0.1 0.009 131.2 24.6-108.0 149.5 30.8 24.8 23.3 28 4 G X 0 0 59 -3,-0.4 -2,-0.1 -2,-0.1 4,-0.0 0.511 360.0 360.0-119.9-138.5 29.7 22.6 24.6 29 5 G X 0 0 176 -4,-0.2 -3,-0.3 -3,-0.1 0, 0.0 0.917 360.0 360.0 28.5 360.0 28.3 19.2 24.0 30 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 31 7 G T 0 0 83 0, 0.0 3,-0.3 0, 0.0 4,-0.3 0.000 360.0 360.0 360.0 170.4 33.9 23.7 19.2 32 8 G X B -C 26 0C 87 -6,-2.1 -6,-2.8 3,-0.4 2,-0.1 -0.503 360.0 -71.9 66.9-109.0 31.2 23.6 16.5 33 9 G P S S+ 0 0 99 0, 0.0 -1,-0.3 0, 0.0 2,-0.1 0.371 130.4 33.4 -79.3 146.0 31.8 21.0 15.3 34 10 G X 0 0 63 -3,-0.3 -2,-0.1 -2,-0.1 -8,-0.0 0.580 360.0 360.0-116.7-173.8 34.1 21.9 14.1 35 11 G X 0 0 175 -4,-0.3 -3,-0.4 -2,-0.1 -9,-0.0 0.989 360.0 360.0 57.9 360.0 36.6 24.5 15.5 36 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 37 1 H T 0 0 81 0, 0.0 3,-0.4 0, 0.0 7,-0.1 0.000 360.0 360.0 360.0 157.6 47.8 12.2 -5.9 38 2 H X B -D 44 0D 82 6,-2.2 6,-1.9 3,-0.3 2,-0.2 -0.598 360.0 -65.2 92.0-119.9 51.4 13.1 -6.7 39 3 H P S S+ 0 0 100 0, 0.0 -1,-0.3 0, 0.0 2,-0.1 0.421 130.6 22.6 -85.9 155.9 51.3 15.0 -8.9 40 4 H X 0 0 60 -3,-0.4 -2,-0.1 -2,-0.2 4,-0.0 0.720 360.0 360.0-106.5-163.9 50.3 13.2 -10.7 41 5 H X 0 0 172 -4,-0.1 -3,-0.3 -3,-0.1 0, 0.0 0.975 360.0 360.0 59.8 360.0 48.3 10.0 -10.1 42 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 43 7 H T 0 0 78 0, 0.0 3,-0.5 0, 0.0 -5,-0.2 0.000 360.0 360.0 360.0 161.7 48.9 16.6 -4.7 44 8 H X B -D 38 0D 85 -6,-1.9 -6,-2.2 3,-0.3 3,-0.1 -0.537 360.0 -68.4 84.2-109.5 50.0 13.9 -2.1 45 9 H P S S+ 0 0 98 0, 0.0 -1,-0.3 0, 0.0 2,-0.1 0.341 131.1 29.2 -85.7 156.1 47.4 13.1 -1.0 46 10 H X 0 0 71 -3,-0.5 -8,-0.1 -2,-0.1 0, 0.0 0.705 360.0 360.0-101.2-165.6 46.8 15.5 0.3 47 11 H X 0 0 172 -3,-0.1 -3,-0.3 -2,-0.1 0, 0.0 0.949 360.0 360.0 44.3 360.0 47.9 18.9 -0.8