==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN,HYDROLASE 30-JUN-09 3I31 . COMPND 2 MOLECULE: HEAT RESISTANT RNA DEPENDENT ATPASE; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; . AUTHOR M.G.RUDOLPH,D.KLOSTERMEIER . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5501.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 41 53.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 26.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 423 A A 0 0 159 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 32.5 14.2 12.0 39.7 2 424 A A - 0 0 52 1,-0.1 2,-0.2 9,-0.0 11,-0.0 -0.219 360.0 -99.4 -58.6 145.9 13.7 15.1 37.6 3 425 A E - 0 0 90 8,-0.1 9,-2.6 11,-0.0 10,-1.1 -0.500 45.1-151.9 -62.8 136.0 11.6 14.9 34.4 4 426 A R B -A 11 0A 134 7,-0.2 11,-0.4 8,-0.2 7,-0.2 -0.908 18.8-101.5-120.0 144.3 14.0 14.5 31.5 5 427 A S > - 0 0 4 5,-2.8 4,-1.8 -2,-0.4 9,-0.1 -0.400 18.2-149.4 -59.3 132.3 13.5 15.6 27.8 6 428 A L T 4 S+ 0 0 80 1,-0.2 -1,-0.2 2,-0.2 8,-0.0 0.643 98.0 51.5 -74.8 -16.1 12.6 12.6 25.5 7 429 A L T 4 S+ 0 0 63 3,-0.1 -1,-0.2 34,-0.1 35,-0.0 0.889 131.3 5.9 -84.6 -43.5 14.5 14.5 22.8 8 430 A T T 4 S- 0 0 73 2,-0.2 -2,-0.2 33,-0.1 3,-0.1 0.535 87.3-122.3-121.8 -13.3 17.8 15.3 24.4 9 431 A G < + 0 0 34 -4,-1.8 -3,-0.1 1,-0.3 4,-0.1 0.266 61.9 144.5 81.5 -11.3 17.8 13.5 27.8 10 432 A E - 0 0 112 -6,-0.2 -5,-2.8 1,-0.1 3,-0.5 -0.315 50.5-120.1 -62.5 138.7 18.4 16.9 29.6 11 433 A E B S+A 4 0A 110 -7,-0.2 -7,-0.2 1,-0.2 3,-0.1 -0.454 89.7 52.7 -78.3 154.2 16.7 17.2 33.0 12 434 A G S S+ 0 0 23 -9,-2.6 2,-0.3 1,-0.3 -1,-0.2 0.590 91.6 94.8 99.6 14.5 14.2 20.0 33.6 13 435 A W - 0 0 17 -10,-1.1 2,-0.4 -3,-0.5 -1,-0.3 -0.981 52.0-159.3-140.8 146.0 11.9 19.3 30.5 14 436 A R E -B 53 0B 54 39,-2.7 39,-2.1 -2,-0.3 2,-0.4 -0.999 28.0-133.3-119.7 126.8 8.8 17.4 29.5 15 437 A T E -B 52 0B 5 -2,-0.4 54,-2.8 -11,-0.4 2,-0.3 -0.634 24.6-172.6 -85.5 130.4 8.5 16.6 25.8 16 438 A Y E -BC 51 68B 12 35,-2.9 35,-2.6 -2,-0.4 2,-0.5 -0.869 22.4-132.2-113.8 156.2 5.2 17.4 24.1 17 439 A K E -BC 50 67B 41 50,-3.1 50,-2.1 -2,-0.3 2,-0.4 -0.936 27.2-161.4-100.6 126.1 3.9 16.6 20.6 18 440 A A E +BC 49 66B 0 31,-3.5 31,-2.3 -2,-0.5 2,-0.3 -0.923 12.9 173.9-113.6 134.7 2.3 19.7 19.1 19 441 A T E + C 0 65B 39 46,-2.4 46,-3.1 -2,-0.4 29,-0.1 -0.964 12.4 133.9-134.5 154.2 -0.1 19.7 16.1 20 442 A G > - 0 0 33 -2,-0.3 3,-1.1 27,-0.3 2,-0.3 -0.962 54.8 -61.5 177.3 170.2 -2.1 22.4 14.4 21 443 A P T 3 S- 0 0 95 0, 0.0 3,-0.2 0, 0.0 -2,-0.0 -0.555 115.3 -9.8 -75.5 127.4 -3.1 24.0 11.1 22 444 A R T 3 S- 0 0 235 -2,-0.3 2,-0.5 1,-0.2 5,-0.1 0.873 92.6-179.0 51.9 38.3 -0.3 25.4 8.9 23 445 A L < + 0 0 29 -3,-1.1 2,-0.3 4,-0.1 -1,-0.2 -0.589 7.1 174.5 -76.1 122.5 1.9 24.8 11.9 24 446 A S > - 0 0 51 -2,-0.5 4,-2.8 -3,-0.2 5,-0.2 -0.806 43.8-106.3-118.2 168.2 5.5 25.9 11.4 25 447 A L H > S+ 0 0 75 -2,-0.3 4,-2.5 1,-0.2 5,-0.2 0.916 119.2 45.7 -62.5 -47.2 8.3 25.9 13.8 26 448 A P H > S+ 0 0 93 0, 0.0 4,-2.6 0, 0.0 -1,-0.2 0.904 114.0 49.2 -63.6 -39.2 8.4 29.7 14.2 27 449 A R H > S+ 0 0 131 2,-0.2 4,-2.5 1,-0.2 -2,-0.2 0.913 111.2 50.0 -65.5 -43.1 4.6 29.9 14.6 28 450 A L H X S+ 0 0 0 -4,-2.8 4,-2.3 2,-0.2 5,-0.2 0.963 114.1 43.7 -56.0 -56.0 4.7 27.1 17.2 29 451 A V H X S+ 0 0 40 -4,-2.5 4,-3.1 1,-0.2 5,-0.3 0.930 113.0 52.5 -56.2 -45.0 7.4 28.8 19.3 30 452 A A H X S+ 0 0 65 -4,-2.6 4,-1.8 1,-0.2 -1,-0.2 0.894 109.3 49.4 -62.2 -39.4 5.7 32.2 18.9 31 453 A L H X S+ 0 0 48 -4,-2.5 4,-0.7 2,-0.2 -1,-0.2 0.903 113.2 46.4 -67.6 -40.8 2.4 30.8 20.1 32 454 A L H ><>S+ 0 0 0 -4,-2.3 5,-1.9 2,-0.2 3,-1.1 0.930 112.0 49.6 -65.1 -46.0 4.1 29.2 23.2 33 455 A K H ><5S+ 0 0 103 -4,-3.1 3,-2.0 1,-0.3 -1,-0.2 0.849 103.8 62.0 -60.9 -31.2 6.1 32.4 24.0 34 456 A G H 3<5S+ 0 0 61 -4,-1.8 -1,-0.3 1,-0.3 -2,-0.2 0.763 101.3 51.8 -66.9 -24.6 2.8 34.2 23.7 35 457 A Q T <<5S- 0 0 111 -3,-1.1 -1,-0.3 -4,-0.7 -2,-0.2 0.320 123.5-109.1 -88.8 6.6 1.6 32.1 26.6 36 458 A G T < 5 + 0 0 67 -3,-2.0 2,-0.3 1,-0.2 -3,-0.2 0.785 68.0 151.2 72.0 26.5 4.7 33.1 28.6 37 459 A L < - 0 0 22 -5,-1.9 2,-0.4 20,-0.0 -1,-0.2 -0.723 48.8-125.7 -90.9 142.3 6.2 29.6 28.3 38 460 A E - 0 0 97 -2,-0.3 16,-0.5 16,-0.0 2,-0.5 -0.714 30.1-148.0 -73.5 130.5 9.9 28.9 28.3 39 461 A V E -D 53 0B 26 -2,-0.4 14,-0.2 14,-0.1 3,-0.1 -0.894 17.9-179.2-109.7 127.7 10.6 26.8 25.2 40 462 A G E - 0 0 20 12,-3.2 -1,-0.1 -2,-0.5 13,-0.1 0.158 54.3 -13.5 -96.1-140.6 13.3 24.2 25.1 41 463 A K E - 0 0 121 10,-0.1 11,-2.6 12,-0.0 2,-0.4 -0.314 61.5-168.1 -64.1 141.1 14.4 22.0 22.3 42 464 A V E +D 51 0B 24 9,-0.2 2,-0.3 -3,-0.1 9,-0.2 -0.993 11.8 167.0-127.9 137.7 12.0 21.9 19.3 43 465 A A E -D 50 0B 33 7,-2.3 7,-3.1 -2,-0.4 2,-0.1 -0.992 40.3 -91.8-148.5 152.7 12.3 19.3 16.5 44 466 A E E -D 49 0B 161 -2,-0.3 5,-0.3 5,-0.2 2,-0.2 -0.391 40.9-171.3 -67.5 140.0 10.1 18.1 13.6 45 467 A A E > -D 48 0B 9 3,-2.7 2,-0.8 -27,-0.1 3,-0.8 -0.657 41.6 -81.2-113.1 179.3 7.8 15.1 14.3 46 468 A E T 3 S+ 0 0 181 1,-0.2 3,-0.1 -2,-0.2 -2,-0.0 -0.763 120.9 1.2 -84.6 112.1 5.7 13.1 12.0 47 469 A G T 3 S- 0 0 61 -2,-0.8 -27,-0.3 1,-0.2 2,-0.3 0.551 141.5 -7.9 88.2 9.5 2.6 15.3 11.6 48 470 A G E < S- D 0 45B 13 -3,-0.8 -3,-2.7 -29,-0.1 2,-0.3 -0.898 89.4 -61.2 170.1-143.5 3.8 18.1 13.8 49 471 A F E -BD 18 44B 24 -31,-2.3 -31,-3.5 -5,-0.3 2,-0.4 -0.965 25.2-132.6-134.8 153.3 6.6 19.0 16.2 50 472 A Y E -BD 17 43B 81 -7,-3.1 -7,-2.3 -2,-0.3 2,-0.4 -0.876 32.1-177.5 -94.5 145.7 8.1 17.8 19.4 51 473 A V E -BD 16 42B 0 -35,-2.6 -35,-2.9 -2,-0.4 2,-0.5 -0.987 21.7-136.2-150.2 128.3 8.7 20.6 21.9 52 474 A D E +B 15 0B 1 -11,-2.6 -12,-3.2 -2,-0.4 2,-0.3 -0.757 27.6 172.1 -84.2 128.7 10.2 20.7 25.3 53 475 A L E -BD 14 39B 0 -39,-2.1 -39,-2.7 -2,-0.5 -14,-0.1 -0.891 44.4 -83.0-128.0 160.2 8.5 22.7 28.0 54 476 A R > - 0 0 84 -16,-0.5 3,-1.9 -2,-0.3 -41,-0.2 -0.366 39.3-122.4 -62.9 143.4 9.2 23.0 31.8 55 477 A P T 3 S+ 0 0 24 0, 0.0 -1,-0.1 0, 0.0 -42,-0.1 0.793 111.8 56.4 -58.3 -29.4 7.4 20.1 33.7 56 478 A E T 3 S+ 0 0 137 2,-0.0 -2,-0.1 -42,-0.0 2,-0.0 0.608 85.3 106.3 -79.5 -11.8 5.6 22.6 35.8 57 479 A A < - 0 0 14 -3,-1.9 -4,-0.1 1,-0.1 -20,-0.0 -0.335 55.4-157.8 -71.7 148.6 4.0 24.4 32.7 58 480 A R - 0 0 175 2,-0.0 2,-0.4 -2,-0.0 -1,-0.1 -0.709 20.4-159.8-127.1 80.5 0.4 23.8 31.9 59 481 A P + 0 0 14 0, 0.0 2,-0.4 0, 0.0 7,-0.1 -0.473 24.4 162.6 -76.8 115.8 0.2 24.6 28.2 60 482 A E + 0 0 161 -2,-0.4 2,-0.6 -28,-0.1 5,-0.1 -0.885 10.7 175.0-130.3 99.3 -3.1 25.5 26.7 61 483 A V > - 0 0 9 -2,-0.4 3,-1.6 3,-0.4 -29,-0.1 -0.930 37.0-107.8-111.8 121.5 -2.6 27.3 23.4 62 484 A A T 3 S- 0 0 96 -2,-0.6 3,-0.1 1,-0.3 -2,-0.0 -0.103 96.6 -2.6 -51.0 134.8 -5.7 28.1 21.4 63 485 A G T 3 S+ 0 0 78 1,-0.2 2,-0.4 -43,-0.1 -1,-0.3 0.232 110.7 108.4 71.8 -17.1 -6.3 26.0 18.2 64 486 A L < - 0 0 21 -3,-1.6 2,-0.6 -44,-0.1 -3,-0.4 -0.778 63.1-143.1 -95.0 132.7 -3.0 24.2 18.9 65 487 A R E +C 19 0B 147 -46,-3.1 -46,-2.4 -2,-0.4 2,-0.5 -0.860 21.7 177.2 -98.5 122.9 -3.0 20.6 20.2 66 488 A L E +C 18 0B 30 -2,-0.6 -48,-0.2 -48,-0.2 -2,-0.0 -0.961 3.8 167.9-127.4 116.3 -0.4 19.7 22.7 67 489 A E E -C 17 0B 82 -50,-2.1 -50,-3.1 -2,-0.5 -2,-0.0 -0.968 43.5 -99.5-125.4 144.3 -0.1 16.3 24.4 68 490 A P E -C 16 0B 81 0, 0.0 -52,-0.3 0, 0.0 2,-0.2 -0.354 41.8-124.1 -56.8 134.3 2.7 14.8 26.4 69 491 A A - 0 0 23 -54,-2.8 2,-0.3 2,-0.0 -54,-0.2 -0.523 20.6-133.1 -77.0 148.8 4.9 12.6 24.3 70 492 A R - 0 0 196 -2,-0.2 3,-0.0 1,-0.1 -1,-0.0 -0.811 9.4-131.8-101.9 148.6 5.4 9.0 25.5 71 493 A R S S+ 0 0 198 -2,-0.3 2,-0.3 1,-0.1 -1,-0.1 0.815 92.1 14.4 -66.0 -31.2 8.8 7.4 25.6 72 494 A V - 0 0 84 -3,-0.0 2,-0.3 0, 0.0 -1,-0.1 -0.947 64.6-165.9-139.3 159.4 7.4 4.3 23.8 73 495 A E - 0 0 159 -2,-0.3 2,-0.1 -3,-0.0 0, 0.0 -0.984 13.4-138.2-145.2 152.6 4.2 3.3 22.0 74 496 A G - 0 0 73 -2,-0.3 0, 0.0 1,-0.0 0, 0.0 -0.119 37.5 -92.6 -96.7-165.2 2.7 -0.0 20.9 75 497 A L 0 0 183 1,-0.3 -1,-0.0 -2,-0.1 -2,-0.0 0.503 360.0 360.0 -88.5 -4.3 1.1 -1.3 17.8 76 498 A L 0 0 219 0, 0.0 -1,-0.3 0, 0.0 -3,-0.0 -0.425 360.0 360.0 58.5 360.0 -2.3 -0.3 19.3