==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIGASE 27-FEB-01 1I5H . COMPND 2 MOLECULE: UBIQUITIN LIGASE NEDD4; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR V.KANELIS,D.ROTIN,J.D.FORMAN-KAY . 67 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5858.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 21 31.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 14.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 450 W G 0 0 117 0, 0.0 3,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 131.1 10.4 -22.7 -12.9 2 451 W S - 0 0 103 1,-0.2 2,-0.5 0, 0.0 0, 0.0 0.998 360.0-140.2 65.9 67.8 8.8 -25.4 -10.7 3 452 W P + 0 0 128 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 -0.451 48.4 127.7 -63.6 109.7 5.1 -24.5 -11.2 4 453 W V - 0 0 91 -2,-0.5 3,-0.4 -3,-0.2 2,-0.4 -0.987 68.0-115.2-160.8 158.2 3.4 -25.0 -7.8 5 454 W D S S+ 0 0 151 -2,-0.3 3,-0.1 1,-0.2 0, 0.0 -0.203 76.5 116.3 -91.2 42.9 1.2 -23.3 -5.2 6 455 W S S S- 0 0 102 -2,-0.4 -1,-0.2 1,-0.2 41,-0.0 0.959 95.9 -7.0 -74.2 -54.1 4.0 -23.2 -2.7 7 456 W N S S+ 0 0 91 -3,-0.4 2,-0.4 39,-0.1 -1,-0.2 -0.417 100.6 118.0-143.5 62.4 4.4 -19.5 -2.4 8 457 W D + 0 0 113 1,-0.1 35,-0.0 -3,-0.1 0, 0.0 -0.997 17.5 157.0-134.6 134.7 2.3 -17.8 -5.0 9 458 W L - 0 0 87 -2,-0.4 -1,-0.1 1,-0.2 34,-0.0 0.663 28.1-159.4-120.7 -41.7 -0.7 -15.4 -4.6 10 459 W G S S+ 0 0 42 1,-0.1 2,-2.3 32,-0.0 -1,-0.2 -0.826 76.6 40.2 98.6-107.2 -0.9 -13.5 -7.9 11 460 W P S S- 0 0 106 0, 0.0 5,-0.1 0, 0.0 -1,-0.1 -0.282 120.7 -90.2 -76.8 56.0 -2.8 -10.2 -7.5 12 461 W L - 0 0 17 -2,-2.3 3,-0.1 5,-0.1 6,-0.1 0.237 63.5 -54.3 57.2 170.2 -1.2 -9.4 -4.1 13 462 W P S > S- 0 0 19 0, 0.0 3,-1.2 0, 0.0 2,-0.2 -0.015 76.8 -65.2 -69.0 178.9 -2.7 -10.6 -0.8 14 463 W P T 3 S+ 0 0 114 0, 0.0 17,-0.1 0, 0.0 3,-0.1 -0.488 121.7 10.6 -71.7 133.1 -6.3 -9.8 0.3 15 464 W G T 3 S+ 0 0 36 1,-0.3 16,-2.0 -2,-0.2 2,-0.1 0.360 106.0 116.2 82.6 -7.3 -7.1 -6.2 1.0 16 465 W W E < -A 30 0A 49 -3,-1.2 2,-0.3 14,-0.3 -1,-0.3 -0.452 46.1-162.7 -92.0 166.4 -3.8 -5.2 -0.7 17 466 W E E -A 29 0A 73 12,-1.3 12,-1.3 -2,-0.1 2,-0.9 -0.995 21.8-125.1-150.5 143.9 -3.2 -3.2 -3.8 18 467 W E E +A 28 0A 106 -2,-0.3 2,-0.4 10,-0.2 10,-0.2 -0.786 36.3 179.7 -94.0 102.5 -0.4 -2.6 -6.2 19 468 W R E -A 27 0A 99 8,-1.6 8,-1.8 -2,-0.9 2,-0.5 -0.823 27.2-121.9-105.8 142.9 0.2 1.2 -6.5 20 469 W T E -A 26 0A 94 -2,-0.4 6,-0.2 6,-0.3 5,-0.1 -0.701 26.3-136.5 -85.5 126.0 2.9 2.8 -8.6 21 470 W H > - 0 0 38 4,-1.7 3,-2.2 -2,-0.5 5,-0.0 -0.375 26.0-107.1 -77.9 158.4 5.3 5.0 -6.7 22 471 W T T 3 S+ 0 0 129 1,-0.3 -1,-0.1 2,-0.1 4,-0.1 0.732 124.1 53.8 -56.1 -22.0 6.4 8.5 -7.9 23 472 W D T 3 S- 0 0 96 2,-0.2 -1,-0.3 0, 0.0 3,-0.1 0.593 123.6-105.4 -88.6 -12.8 9.8 6.8 -8.7 24 473 W G S < S+ 0 0 57 -3,-2.2 2,-0.5 1,-0.3 -2,-0.1 0.140 81.8 125.6 109.3 -18.7 8.1 4.1 -10.8 25 474 W R - 0 0 153 -5,-0.1 -4,-1.7 1,-0.1 2,-0.8 -0.632 60.2-132.1 -78.3 122.2 8.5 1.3 -8.3 26 475 W V E -A 20 0A 75 -2,-0.5 -6,-0.3 -6,-0.2 2,-0.1 -0.651 29.3-169.5 -79.1 111.4 5.1 -0.4 -7.5 27 476 W F E -A 19 0A 2 -8,-1.8 -8,-1.6 -2,-0.8 2,-0.3 -0.338 20.7-105.5 -92.2 176.6 4.7 -0.7 -3.8 28 477 W F E -AB 18 37A 14 9,-1.7 9,-2.4 11,-0.4 2,-0.3 -0.800 30.1-175.0-106.7 148.1 2.2 -2.6 -1.7 29 478 W I E -AB 17 36A 2 -12,-1.3 -12,-1.3 -2,-0.3 2,-0.3 -0.973 12.4-147.7-145.5 127.5 -0.8 -1.1 0.2 30 479 W N E > -AB 16 35A 15 5,-1.5 5,-0.9 -2,-0.3 -14,-0.3 -0.649 5.1-156.8 -94.4 150.5 -3.3 -2.8 2.5 31 480 W H T 5S+ 0 0 71 -16,-2.0 -15,-0.1 -2,-0.3 -16,-0.1 0.153 79.2 79.8-109.7 17.1 -6.9 -1.6 2.9 32 481 W N T 5S+ 0 0 105 3,-0.1 -1,-0.1 -17,-0.1 -17,-0.1 0.891 119.2 0.6 -88.1 -46.4 -7.5 -3.1 6.3 33 482 W I T 5S- 0 0 124 2,-0.1 -2,-0.1 0, 0.0 -1,-0.1 0.006 102.8-108.2-130.9 25.7 -5.8 -0.4 8.4 34 483 W K T 5 + 0 0 80 1,-0.2 2,-0.3 31,-0.1 32,-0.2 0.941 69.7 139.7 42.7 75.5 -4.7 1.9 5.6 35 484 W K E < -B 30 0A 134 -5,-0.9 -5,-1.5 29,-0.1 -1,-0.2 -0.887 31.2-166.7-151.5 115.3 -1.0 1.2 5.8 36 485 W T E -B 29 0A 4 -2,-0.3 2,-0.3 -7,-0.2 -7,-0.2 -0.467 5.3-167.9 -96.0 169.9 1.4 0.9 2.8 37 486 W Q E -B 28 0A 58 -9,-2.4 -9,-1.7 2,-0.2 23,-0.0 -0.986 28.7-136.6-158.6 148.7 5.0 -0.4 2.7 38 487 W W S S+ 0 0 76 -2,-0.3 -1,-0.1 -11,-0.2 -9,-0.0 0.899 86.2 76.2 -72.6 -42.8 8.0 -0.6 0.4 39 488 W E S S- 0 0 137 1,-0.1 -11,-0.4 -12,-0.1 -2,-0.2 0.005 93.5-100.8 -61.6 174.1 8.7 -4.2 1.2 40 489 W D > - 0 0 65 1,-0.1 4,-1.4 -13,-0.1 -1,-0.1 -0.896 30.3-176.6-105.9 113.3 6.7 -7.1 -0.3 41 490 W P T 4 S+ 0 0 29 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.831 86.4 53.5 -75.3 -33.3 4.1 -8.7 2.1 42 491 W R T 4 S+ 0 0 53 1,-0.2 3,-0.1 -29,-0.1 -2,-0.0 0.722 109.8 49.7 -73.6 -21.6 3.1 -11.4 -0.3 43 492 W M T 4 S+ 0 0 130 1,-0.2 2,-2.3 -35,-0.0 -1,-0.2 0.836 92.2 77.5 -84.6 -36.6 6.7 -12.4 -0.7 44 493 W Q S < S+ 0 0 166 -4,-1.4 2,-0.3 2,-0.0 -1,-0.2 -0.468 78.0 97.5 -75.9 74.7 7.5 -12.6 3.0 45 494 W N + 0 0 63 -2,-2.3 3,-0.1 -3,-0.1 -3,-0.0 -0.926 23.7 148.3-163.6 135.8 5.7 -16.0 3.5 46 495 W V + 0 0 137 -2,-0.3 2,-0.3 1,-0.2 -39,-0.1 0.034 64.9 52.6-159.6 33.0 6.8 -19.6 3.7 47 496 W A + 0 0 84 -41,-0.0 2,-0.3 2,-0.0 -1,-0.2 -0.960 49.6 165.0-168.8 151.9 4.4 -21.3 6.1 48 497 W I - 0 0 167 -2,-0.3 2,-0.4 -3,-0.1 -3,-0.0 -0.923 30.5-108.8-158.3-179.4 0.7 -21.8 6.8 49 498 W T 0 0 138 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.987 360.0 360.0-128.3 131.2 -1.9 -23.8 8.7 50 499 W G 0 0 141 -2,-0.4 -2,-0.0 0, 0.0 0, 0.0 -0.956 360.0 360.0-141.2 360.0 -4.4 -26.4 7.3 51 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 52 605 B G 0 0 130 0, 0.0 3,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 49.1 21.4 17.1 -6.0 53 606 B S + 0 0 102 1,-0.2 2,-2.8 3,-0.0 0, 0.0 0.964 360.0 149.8 -82.2 -67.7 19.2 14.2 -4.8 54 607 B T + 0 0 136 1,-0.1 -1,-0.2 2,-0.1 0, 0.0 -0.385 47.3 94.1 69.1 -71.9 21.7 11.3 -4.2 55 608 B L + 0 0 103 -2,-2.8 -1,-0.1 -3,-0.2 0, 0.0 -0.342 49.6 176.7 -55.4 107.8 19.6 9.8 -1.5 56 609 B P S S+ 0 0 96 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.840 72.2 33.9 -83.5 -36.6 17.4 7.2 -3.3 57 610 B I + 0 0 124 1,-0.1 -2,-0.0 2,-0.0 0, 0.0 -0.893 59.7 178.5-125.8 101.9 15.7 5.7 -0.2 58 611 B P - 0 0 86 0, 0.0 -1,-0.1 0, 0.0 -3,-0.0 0.921 49.1-113.4 -66.1 -45.3 14.9 8.2 2.6 59 612 B G S S+ 0 0 61 1,-0.5 -2,-0.0 0, 0.0 0, 0.0 -0.035 77.4 114.8 136.6 -33.3 13.2 5.6 4.8 60 613 B T - 0 0 98 1,-0.1 -1,-0.5 -23,-0.0 -23,-0.0 -0.433 68.4-111.3 -70.6 141.0 9.6 6.7 4.9 61 614 B P - 0 0 75 0, 0.0 3,-0.2 0, 0.0 -1,-0.1 -0.099 44.7 -76.9 -65.7 168.6 7.0 4.4 3.3 62 615 B P S S- 0 0 9 0, 0.0 2,-0.2 0, 0.0 -26,-0.2 0.217 77.2 -47.9 -54.4-175.4 5.1 5.3 0.1 63 616 B P - 0 0 46 0, 0.0 5,-0.1 0, 0.0 0, 0.0 -0.415 65.9-116.0 -63.7 125.7 2.1 7.7 0.0 64 617 B N >> - 0 0 69 -2,-0.2 4,-1.3 -3,-0.2 3,-0.6 -0.202 17.7-120.2 -59.8 152.0 -0.4 6.9 2.8 65 618 B Y T 34 S+ 0 0 82 1,-0.2 -1,-0.1 2,-0.2 -30,-0.1 0.847 114.0 59.6 -62.9 -34.4 -3.9 5.8 1.7 66 619 B D T 34 S+ 0 0 132 1,-0.2 -1,-0.2 -32,-0.2 -2,-0.0 0.808 110.8 41.3 -64.2 -29.7 -5.4 8.8 3.5 67 620 B S T <4 0 0 108 -3,-0.6 -1,-0.2 1,-0.0 -2,-0.2 0.661 360.0 360.0 -90.5 -19.6 -3.3 11.1 1.2 68 621 B L < 0 0 120 -4,-1.3 -2,-0.2 -5,-0.1 -3,-0.1 0.988 360.0 360.0 -72.3 360.0 -3.9 9.0 -1.9