==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-JUL-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE/RNA 29-NOV-12 4I67 . COMPND 2 MOLECULE: HEAT RESISTANT RNA DEPENDENT ATPASE; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; . AUTHOR M.G.RUDOLPH,D.KLOSTERMEIER . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5069.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 42 55.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 28.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 424 A A 0 0 143 0, 0.0 2,-0.2 0, 0.0 9,-0.0 0.000 360.0 360.0 360.0 32.2 25.3 -18.1 2.9 2 425 A E - 0 0 76 11,-0.0 9,-2.2 2,-0.0 10,-0.9 -0.752 360.0-173.9-164.6 108.5 28.1 -16.0 1.3 3 426 A R B -A 10 0A 143 7,-0.2 11,-0.4 -2,-0.2 7,-0.2 -0.803 27.7-108.4-120.4 147.7 28.0 -14.4 -2.2 4 427 A S - 0 0 6 5,-2.0 9,-0.1 -2,-0.3 -1,-0.1 -0.304 18.7-145.8 -58.8 148.2 30.2 -12.5 -4.7 5 428 A L S S+ 0 0 91 65,-0.0 -1,-0.1 1,-0.0 66,-0.1 0.540 99.7 46.5 -92.8 -12.0 29.3 -8.8 -5.1 6 429 A L S S+ 0 0 45 3,-0.1 2,-0.1 34,-0.1 35,-0.0 0.904 127.4 18.9 -89.3 -62.8 30.3 -9.0 -8.8 7 430 A T S S- 0 0 62 2,-0.1 5,-0.0 33,-0.1 -4,-0.0 -0.268 82.7-124.4 -83.5-175.6 28.5 -12.2 -9.8 8 431 A G + 0 0 44 -2,-0.1 4,-0.1 -3,-0.1 -1,-0.1 0.572 65.5 131.2 -98.8 -11.1 25.7 -13.4 -7.6 9 432 A E > - 0 0 92 -6,-0.2 -5,-2.0 1,-0.1 3,-0.6 -0.041 57.2-121.7 -63.8 135.9 27.3 -16.8 -7.1 10 433 A E B 3 S+A 3 0A 119 -7,-0.2 -7,-0.2 1,-0.2 -1,-0.1 -0.215 89.2 50.0 -60.9 156.8 27.7 -18.4 -3.6 11 434 A G T 3 S+ 0 0 25 -9,-2.2 2,-0.3 1,-0.3 -1,-0.2 0.548 89.9 97.4 90.8 8.7 31.2 -19.3 -2.5 12 435 A W < - 0 0 19 -10,-0.9 2,-0.4 -3,-0.6 -1,-0.3 -0.911 51.2-159.3-126.3 156.3 32.9 -16.1 -3.2 13 436 A R E -B 52 0B 59 39,-2.3 39,-2.2 -2,-0.3 2,-0.4 -0.985 24.1-129.9-131.4 126.6 33.9 -13.0 -1.2 14 437 A T E -B 51 0B 4 -2,-0.4 54,-3.2 -11,-0.4 2,-0.3 -0.589 26.9-173.8 -81.4 125.4 34.6 -9.8 -3.1 15 438 A Y E -BC 50 67B 20 35,-2.6 35,-2.4 -2,-0.4 2,-0.6 -0.852 22.1-132.0-111.8 151.5 37.8 -7.9 -2.3 16 439 A K E -BC 49 66B 44 50,-3.5 50,-1.3 -2,-0.3 2,-0.5 -0.927 22.3-161.0 -98.8 122.9 39.1 -4.6 -3.4 17 440 A A E +BC 48 65B 0 31,-3.5 31,-2.3 -2,-0.6 2,-0.3 -0.904 15.4 170.2-100.8 126.8 42.8 -4.7 -4.6 18 441 A T E + C 0 64B 24 46,-1.9 46,-2.5 -2,-0.5 29,-0.1 -0.939 16.3 105.2-131.9 160.4 44.8 -1.5 -4.8 19 442 A G > - 0 0 37 -2,-0.3 3,-0.6 44,-0.2 44,-0.1 -0.847 61.6 -61.7 151.9 170.3 48.5 -0.8 -5.3 20 443 A P T 3 S+ 0 0 101 0, 0.0 3,-0.1 0, 0.0 -2,-0.0 -0.401 110.3 17.0 -80.1 157.3 51.1 0.5 -7.8 21 444 A R T 3 S+ 0 0 199 1,-0.2 2,-0.2 -2,-0.1 5,-0.1 0.797 89.9 166.2 49.4 32.9 51.9 -1.1 -11.2 22 445 A L < + 0 0 36 -3,-0.6 2,-0.3 4,-0.1 -1,-0.2 -0.543 6.6 152.4 -79.4 141.8 48.6 -2.9 -10.9 23 446 A S > - 0 0 49 -2,-0.2 4,-2.8 1,-0.2 5,-0.2 -0.960 53.3-102.2-160.3 164.2 47.0 -4.7 -13.9 24 447 A L H > S+ 0 0 78 -2,-0.3 4,-2.6 1,-0.2 5,-0.3 0.968 117.4 43.7 -60.4 -56.0 44.7 -7.6 -14.4 25 448 A P H > S+ 0 0 93 0, 0.0 4,-2.0 0, 0.0 -1,-0.2 0.892 116.8 46.8 -58.1 -40.6 47.3 -10.2 -15.4 26 449 A R H > S+ 0 0 72 2,-0.2 4,-2.7 1,-0.2 5,-0.2 0.919 111.6 51.5 -67.9 -41.3 49.8 -9.2 -12.7 27 450 A L H X S+ 0 0 0 -4,-2.8 4,-2.0 1,-0.2 -1,-0.2 0.916 111.9 46.6 -57.5 -44.2 47.1 -9.2 -10.1 28 451 A V H X S+ 0 0 39 -4,-2.6 4,-2.3 -5,-0.2 -1,-0.2 0.844 111.8 51.9 -68.8 -33.6 46.0 -12.7 -11.1 29 452 A A H X S+ 0 0 64 -4,-2.0 4,-1.7 -5,-0.3 -2,-0.2 0.912 108.8 49.4 -70.0 -42.7 49.6 -13.8 -11.1 30 453 A L H X S+ 0 0 40 -4,-2.7 4,-1.0 2,-0.2 -2,-0.2 0.923 114.8 44.6 -63.0 -44.6 50.3 -12.5 -7.6 31 454 A L H ><>S+ 0 0 0 -4,-2.0 5,-1.9 1,-0.2 3,-1.1 0.956 114.8 45.8 -64.3 -52.5 47.2 -14.2 -6.2 32 455 A K H ><5S+ 0 0 138 -4,-2.3 3,-1.1 1,-0.3 -1,-0.2 0.764 106.0 63.1 -65.9 -24.2 47.7 -17.5 -7.9 33 456 A G H 3<5S+ 0 0 59 -4,-1.7 -1,-0.3 1,-0.3 -2,-0.2 0.804 99.9 52.6 -66.5 -32.2 51.3 -17.4 -6.9 34 457 A Q T <<5S- 0 0 117 -3,-1.1 -1,-0.3 -4,-1.0 -2,-0.2 0.358 125.2-108.0 -80.8 3.3 50.0 -17.5 -3.3 35 458 A G T < 5S+ 0 0 68 -3,-1.1 2,-0.3 1,-0.3 -3,-0.2 0.678 71.5 147.1 77.0 17.1 48.1 -20.6 -4.2 36 459 A L < - 0 0 28 -5,-1.9 2,-0.3 20,-0.0 -1,-0.3 -0.666 49.1-126.9 -85.4 140.2 44.8 -18.7 -4.1 37 460 A E - 0 0 111 -2,-0.3 16,-0.5 -5,-0.0 2,-0.5 -0.667 27.9-148.2 -78.6 139.5 41.9 -19.6 -6.4 38 461 A V E -D 52 0B 29 -2,-0.3 14,-0.2 14,-0.1 3,-0.1 -0.939 17.0-179.0-123.6 124.4 40.6 -16.5 -8.3 39 462 A G E - 0 0 22 12,-2.3 2,-0.1 -2,-0.5 -1,-0.1 0.382 56.0 -11.6 -88.9-139.1 37.1 -15.8 -9.4 40 463 A K E - 0 0 120 10,-0.1 11,-2.3 12,-0.1 2,-0.4 -0.408 61.1-164.6 -61.2 133.2 35.6 -12.9 -11.3 41 464 A V E -D 50 0B 20 9,-0.2 2,-0.4 -3,-0.1 9,-0.2 -0.977 7.5-177.2-117.9 137.5 38.0 -9.9 -11.6 42 465 A A E -D 49 0B 20 7,-3.0 7,-3.1 -2,-0.4 2,-0.2 -0.986 21.7-127.9-140.7 131.4 36.7 -6.4 -12.6 43 466 A E E -D 48 0B 105 -2,-0.4 32,-2.0 5,-0.2 33,-0.5 -0.445 28.4-179.0 -77.5 141.8 38.6 -3.2 -13.1 44 467 A A E > -DE 47 74B 7 3,-3.5 3,-1.1 30,-0.3 30,-0.3 -0.871 43.5 -96.1-132.7 170.0 37.5 -0.0 -11.4 45 468 A E T 3 S+ 0 0 162 28,-3.1 28,-0.1 -2,-0.3 29,-0.1 0.808 123.8 35.5 -53.8 -35.8 38.6 3.6 -11.3 46 469 A G T 3 S- 0 0 53 27,-0.1 2,-0.3 1,-0.1 -1,-0.3 0.332 131.4 -62.5-106.3 4.7 40.7 3.1 -8.2 47 470 A G E < S- D 0 44B 13 -3,-1.1 -3,-3.5 -29,-0.1 2,-0.4 -0.988 74.1 -42.3 155.9-139.4 42.0 -0.5 -8.8 48 471 A F E -BD 17 43B 8 -31,-2.3 -31,-3.5 -2,-0.3 2,-0.4 -0.967 30.0-144.8-128.5 144.5 40.4 -3.9 -9.1 49 472 A Y E -BD 16 42B 11 -7,-3.1 -7,-3.0 -2,-0.4 2,-0.4 -0.892 28.0-177.5 -96.6 139.2 37.7 -5.9 -7.5 50 473 A V E -BD 15 41B 0 -35,-2.4 -35,-2.6 -2,-0.4 2,-0.4 -0.999 22.7-130.0-141.4 135.5 38.5 -9.6 -7.3 51 474 A D E +B 14 0B 0 -11,-2.3 -12,-2.3 -2,-0.4 2,-0.3 -0.690 31.2 173.4 -86.1 133.4 36.6 -12.6 -6.0 52 475 A L E -BD 13 38B 0 -39,-2.2 -39,-2.3 -2,-0.4 -14,-0.1 -0.878 40.8 -81.5-130.2 167.8 38.3 -15.0 -3.6 53 476 A R > - 0 0 67 -16,-0.5 3,-1.3 -2,-0.3 -41,-0.2 -0.509 35.1-130.9 -70.2 136.2 37.3 -17.9 -1.5 54 477 A P T 3 S+ 0 0 25 0, 0.0 -1,-0.1 0, 0.0 -42,-0.1 0.760 107.6 50.3 -57.0 -31.4 35.6 -17.0 1.8 55 478 A E T 3 S+ 0 0 135 2,-0.0 2,-0.1 0, 0.0 -2,-0.1 0.607 90.6 100.4 -85.8 -12.7 37.9 -19.3 3.8 56 479 A A < - 0 0 19 -3,-1.3 -4,-0.1 -19,-0.1 -20,-0.0 -0.470 59.1-157.1 -72.2 144.0 41.0 -17.9 2.2 57 480 A R - 0 0 188 -2,-0.1 2,-0.3 2,-0.1 -1,-0.1 -0.831 22.6-154.7-121.3 88.9 43.0 -15.4 4.2 58 481 A P + 0 0 21 0, 0.0 2,-0.4 0, 0.0 7,-0.1 -0.494 23.3 170.3 -82.1 124.9 44.9 -13.6 1.5 59 482 A E + 0 0 170 -2,-0.3 2,-0.4 -28,-0.1 5,-0.1 -0.989 5.8 173.0-128.0 121.6 48.3 -11.8 2.0 60 483 A V > - 0 0 12 -2,-0.4 3,-1.8 3,-0.3 -29,-0.1 -0.928 30.0-128.9-133.7 110.9 50.1 -10.6 -1.0 61 484 A A T 3 S+ 0 0 99 -2,-0.4 3,-0.1 1,-0.2 -2,-0.0 -0.243 95.7 28.0 -57.3 140.1 53.2 -8.4 -0.7 62 485 A G T 3 S+ 0 0 55 1,-0.2 2,-0.3 -43,-0.0 -1,-0.2 0.340 111.3 80.9 85.8 -6.2 53.0 -5.3 -2.9 63 486 A L < - 0 0 25 -3,-1.8 2,-0.5 -44,-0.1 -3,-0.3 -0.960 66.6-140.0-131.0 150.6 49.1 -5.1 -2.7 64 487 A R E -C 18 0B 138 -46,-2.5 -46,-1.9 -2,-0.3 2,-0.4 -0.942 24.7-171.5-105.4 129.6 46.5 -3.9 -0.2 65 488 A L E +C 17 0B 37 -2,-0.5 -48,-0.2 -48,-0.2 -2,-0.0 -0.974 11.7 162.5-122.5 135.1 43.5 -6.2 0.0 66 489 A E E -C 16 0B 84 -50,-1.3 -50,-3.5 -2,-0.4 3,-0.0 -0.983 45.7 -98.9-148.7 140.2 40.3 -5.5 1.9 67 490 A P E -C 15 0B 74 0, 0.0 2,-0.3 0, 0.0 -52,-0.3 -0.358 47.6-116.8 -55.8 130.8 36.8 -7.1 1.7 68 491 A A - 0 0 19 -54,-3.2 -54,-0.2 1,-0.2 3,-0.1 -0.557 30.1-175.9 -76.3 133.2 34.6 -4.8 -0.4 69 492 A R S S+ 0 0 212 1,-0.4 2,-0.3 -2,-0.3 -1,-0.2 0.898 77.2 9.1 -87.5 -61.7 31.8 -3.2 1.4 70 493 A R S S- 0 0 195 2,-0.0 2,-0.7 0, 0.0 -1,-0.4 -0.867 74.5-131.1-111.4 149.9 30.3 -1.5 -1.7 71 494 A V + 0 0 45 -2,-0.3 2,-0.3 -3,-0.1 3,-0.1 -0.909 43.3 158.0 -99.6 117.3 31.3 -2.0 -5.3 72 495 A E + 0 0 141 -2,-0.7 -27,-0.1 1,-0.1 -2,-0.0 -0.951 42.1 30.6-139.3 152.8 31.8 1.4 -6.9 73 496 A G + 0 0 23 -2,-0.3 -28,-3.1 1,-0.2 -1,-0.1 0.747 66.7 174.4 76.1 24.6 33.6 3.1 -9.8 74 497 A L B -E 44 0B 65 -30,-0.3 -30,-0.3 1,-0.1 -1,-0.2 -0.405 31.2-145.4 -63.6 136.2 33.5 0.1 -12.2 75 498 A L 0 0 90 -32,-2.0 -1,-0.1 1,-0.2 -31,-0.1 0.912 360.0 360.0 -68.2 -40.4 34.8 0.8 -15.6 76 499 A E 0 0 215 -33,-0.5 -1,-0.2 -3,-0.0 -33,-0.1 -0.535 360.0 360.0 71.9 360.0 32.2 -1.5 -17.1