==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CYTOKINE 16-MAR-01 1I8Y . COMPND 2 MOLECULE: GRANULIN-1; . SOURCE 2 SYNTHETIC: YES; . AUTHOR W.F.VRANKEN,S.JAMES,H.P.J.BENNETT,F.NI . 28 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2536.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 11 39.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 17.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A H 0 0 206 0, 0.0 2,-0.6 0, 0.0 3,-0.3 0.000 360.0 360.0 360.0 164.1 -1.9 6.6 5.6 2 2 A a > + 0 0 8 1,-0.2 6,-1.0 12,-0.1 5,-0.5 -0.440 360.0 94.2-103.1 57.5 -2.4 6.0 1.9 3 3 A D T 5S+ 0 0 114 -2,-0.6 -1,-0.2 4,-0.2 0, 0.0 0.078 83.3 45.9-132.1 20.9 -6.0 7.1 1.7 4 4 A A T 5S+ 0 0 97 -3,-0.3 -2,-0.1 0, 0.0 0, 0.0 0.391 128.3 18.2-138.7 -10.3 -5.6 10.7 0.7 5 5 A A T 5S+ 0 0 95 -4,-0.1 -3,-0.1 0, 0.0 -2,-0.1 0.190 138.2 24.2-148.3 12.7 -3.0 10.6 -2.0 6 6 A T T 5S- 0 0 76 2,-0.1 -3,-0.2 -5,-0.0 -4,-0.1 0.441 72.0-160.7-143.8 -50.8 -3.1 7.0 -3.1 7 7 A I < - 0 0 124 -5,-0.5 -4,-0.2 1,-0.1 3,-0.1 0.984 19.7-144.4 54.3 80.3 -6.4 5.4 -2.3 8 8 A b - 0 0 16 -6,-1.0 4,-0.2 1,-0.1 3,-0.2 -0.299 32.0 -76.5 -70.5 157.2 -5.6 1.7 -2.4 9 9 A P > - 0 0 81 0, 0.0 3,-1.2 0, 0.0 2,-0.2 0.049 66.7 -73.0 -48.7 162.2 -8.2 -0.9 -3.8 10 10 A D T 3 S+ 0 0 155 1,-0.3 3,-0.1 -3,-0.1 0, 0.0 -0.412 120.1 10.6 -63.6 128.2 -11.2 -1.8 -1.5 11 11 A G T 3 S+ 0 0 71 1,-0.3 2,-0.3 -2,-0.2 17,-0.3 0.843 105.3 118.3 72.7 34.7 -10.1 -4.1 1.3 12 12 A T < - 0 0 28 -3,-1.2 2,-0.3 -4,-0.2 -1,-0.3 -0.944 47.8-151.6-133.0 154.1 -6.4 -3.6 0.7 13 13 A T E -A 25 0A 59 12,-1.5 12,-1.7 -2,-0.3 2,-0.4 -0.938 7.8-144.6-126.5 148.6 -3.5 -2.2 2.7 14 14 A a E -A 24 0A 14 -2,-0.3 2,-0.3 10,-0.2 10,-0.2 -0.884 14.2-174.7-114.8 144.7 -0.3 -0.5 1.6 15 15 A S E -A 23 0A 65 8,-1.4 8,-0.9 -2,-0.4 2,-0.3 -0.987 28.0-110.9-137.8 146.5 3.2 -0.7 3.2 16 16 A L E -A 22 0A 95 -2,-0.3 6,-0.2 6,-0.2 -2,-0.0 -0.561 31.4-139.3 -78.4 137.2 6.5 1.1 2.6 17 17 A S > - 0 0 29 4,-1.9 3,-1.2 -2,-0.3 4,-0.1 -0.598 23.0-112.9 -94.5 156.8 9.3 -1.0 1.2 18 18 A P T 3 S+ 0 0 128 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.591 120.3 53.0 -63.2 -8.3 13.0 -0.9 2.2 19 19 A Y T 3 S- 0 0 219 2,-0.1 -3,-0.0 0, 0.0 0, 0.0 0.663 126.3 -98.0 -98.4 -22.7 13.7 0.5 -1.3 20 20 A G S < S+ 0 0 52 -3,-1.2 2,-0.3 1,-0.3 -4,-0.1 0.791 75.7 132.8 106.2 43.5 11.1 3.3 -1.0 21 21 A V - 0 0 81 -4,-0.1 -4,-1.9 -6,-0.1 2,-0.5 -0.938 42.6-145.7-126.8 148.9 8.0 1.9 -2.8 22 22 A W E +A 16 0A 151 -2,-0.3 2,-0.3 -6,-0.2 -6,-0.2 -0.956 26.0 161.1-117.5 126.4 4.3 1.8 -1.9 23 23 A Y E -A 15 0A 121 -8,-0.9 -8,-1.4 -2,-0.5 2,-0.3 -0.993 24.1-143.3-143.4 148.8 2.1 -1.1 -2.9 24 24 A b E -A 14 0A 46 -2,-0.3 -10,-0.2 -10,-0.2 -12,-0.0 -0.856 11.6-167.0-114.5 149.1 -1.3 -2.4 -1.7 25 25 A S E > -A 13 0A 13 -12,-1.7 -12,-1.5 -2,-0.3 3,-0.9 -0.998 26.3-137.7-137.2 138.8 -2.5 -6.0 -1.4 26 26 A P T 3 S+ 0 0 99 0, 0.0 -14,-0.1 0, 0.0 -2,-0.0 0.162 103.0 58.1 -78.7 20.4 -6.0 -7.5 -0.9 27 27 A F T 3 0 0 156 -14,-0.2 -15,-0.1 0, 0.0 -16,-0.0 -0.087 360.0 360.0-140.4 35.8 -4.5 -10.0 1.6 28 28 A S < 0 0 137 -3,-0.9 -14,-0.1 -17,-0.3 -16,-0.1 0.971 360.0 360.0 57.0 360.0 -2.9 -7.7 4.2