==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DE-NOVO PROTEIN/RNA 19-MAR-01 1I9F . COMPND 2 MOLECULE: REV RESPONSE ELEMENT RNA; . SOURCE 2 SYNTHETIC: YES; . AUTHOR Q.ZHANG,K.HARADA,H.S.CHO,A.FRANKEL,D.E.WEMMER . 19 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2435.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 12 63.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 26.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 36.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 201 B R 0 0 288 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 163.2 2.4 13.4 3.4 2 202 B R + 0 0 230 1,-0.1 2,-0.1 0, 0.0 0, 0.0 0.870 360.0 132.8 46.2 76.7 0.7 10.0 3.6 3 203 B G + 0 0 74 2,-0.0 2,-0.1 3,-0.0 -1,-0.1 -0.544 23.3 99.2-159.2 83.6 3.0 7.6 5.5 4 204 B S S S- 0 0 119 -2,-0.1 0, 0.0 0, 0.0 0, 0.0 0.007 89.1 -67.2-122.8-121.5 1.9 5.3 8.3 5 205 B R + 0 0 176 -2,-0.1 2,-0.1 2,-0.1 -2,-0.0 -0.686 51.8 164.0-139.3 77.3 1.1 1.6 7.7 6 206 B P + 0 0 81 0, 0.0 5,-0.1 0, 0.0 6,-0.0 -0.044 24.2 167.1 -77.7 33.6 -2.0 1.3 5.4 7 207 B S >> - 0 0 32 1,-0.1 4,-3.2 -2,-0.1 3,-1.5 -0.315 42.4-120.1 -65.1 126.7 -0.9 -2.4 4.9 8 208 B G H 3> S+ 0 0 53 1,-0.3 4,-2.1 2,-0.2 -1,-0.1 0.797 107.1 35.7 -42.8 -64.9 -3.8 -4.2 3.2 9 209 B A H 34 S+ 0 0 96 1,-0.2 4,-0.5 2,-0.2 -1,-0.3 0.728 122.9 47.2 -63.7 -24.4 -4.6 -7.0 5.7 10 210 B E H X> S+ 0 0 112 -3,-1.5 3,-0.8 2,-0.2 4,-0.7 0.847 107.6 54.5 -83.3 -40.0 -3.8 -4.6 8.7 11 211 B R H >X S+ 0 0 78 -4,-3.2 4,-2.9 1,-0.2 3,-1.2 0.877 95.1 72.0 -60.6 -36.9 -5.8 -1.8 7.3 12 212 B R H 3X S+ 0 0 189 -4,-2.1 4,-2.8 -5,-0.3 -1,-0.2 0.854 93.4 53.5 -43.1 -46.2 -8.7 -4.3 7.2 13 213 B R H <4 S+ 0 0 217 -3,-0.8 -1,-0.3 -4,-0.5 -2,-0.2 0.813 113.7 42.2 -65.3 -31.9 -8.9 -4.1 11.0 14 214 B R H XX S+ 0 0 176 -3,-1.2 3,-2.1 -4,-0.7 4,-0.8 0.858 110.6 54.8 -79.9 -38.1 -9.2 -0.2 10.8 15 215 B R H >X S+ 0 0 146 -4,-2.9 3,-1.8 1,-0.3 4,-1.1 0.974 104.9 56.2 -57.1 -48.2 -11.7 -0.4 7.8 16 216 B A H 3< S+ 0 0 67 -4,-2.8 -1,-0.3 1,-0.3 -2,-0.2 0.174 99.6 61.4 -67.2 14.2 -13.7 -2.6 10.1 17 217 B A H <4 S+ 0 0 61 -3,-2.1 -1,-0.3 -5,-0.1 -2,-0.2 0.521 96.0 57.4-108.6 -21.3 -13.7 0.3 12.7 18 218 B A H << 0 0 91 -3,-1.8 -2,-0.2 -4,-0.8 -3,-0.1 0.951 360.0 360.0 -65.0 -49.2 -15.5 2.7 10.4 19 219 B A < 0 0 149 -4,-1.1 0, 0.0 0, 0.0 0, 0.0 -0.280 360.0 360.0 -50.3 360.0 -18.4 0.2 10.2