==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 28-MAR-01 1IBN . COMPND 2 MOLECULE: HEMAGGLUTININ HA2 CHAIN PEPTIDE; . SOURCE 2 SYNTHETIC: YES; . AUTHOR X.HAN,J.H.BUSHWELLER,D.S.CAFISO,L.K.TAMM . 20 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2015.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 17 85.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 35.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 45.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G >> 0 0 109 0, 0.0 3,-2.0 0, 0.0 4,-0.7 0.000 360.0 360.0 360.0-160.0 -12.2 -7.1 0.8 2 2 A L H >> + 0 0 141 1,-0.3 4,-2.3 2,-0.2 3,-1.0 0.776 360.0 65.9 -46.1 -43.5 -8.7 -6.7 2.3 3 3 A F H 3> S+ 0 0 174 1,-0.3 4,-2.2 2,-0.2 -1,-0.3 0.834 98.5 54.7 -51.1 -35.8 -7.0 -6.3 -1.1 4 4 A G H <> S+ 0 0 49 -3,-2.0 4,-2.0 2,-0.2 -1,-0.3 0.828 106.6 50.4 -67.6 -33.5 -8.9 -3.1 -1.4 5 5 A A H < S+ 0 0 28 -4,-2.0 3,-1.3 2,-0.2 4,-0.5 0.958 109.7 44.5 -47.4 -59.6 -5.7 2.0 0.1 9 9 A F H ><>S+ 0 0 83 -4,-2.4 5,-1.8 1,-0.3 3,-1.6 0.892 104.3 63.0 -59.3 -44.2 -2.2 1.7 1.6 10 10 A I H 3<5S+ 0 0 72 -4,-2.9 -1,-0.3 1,-0.3 -2,-0.2 0.743 117.5 30.7 -50.1 -24.9 -0.7 1.7 -2.0 11 11 A E T <<5S+ 0 0 151 -3,-1.3 -1,-0.3 -4,-0.9 -2,-0.2 0.370 126.3 46.8-109.9 -1.2 -2.2 5.2 -2.2 12 12 A N T < 5S- 0 0 125 -3,-1.6 -1,-0.2 -4,-0.5 -2,-0.1 -0.609 133.2 -12.8-151.8 72.2 -1.9 6.1 1.6 13 13 A G T > 5S+ 0 0 48 -3,-0.2 3,-2.1 -2,-0.1 4,-0.3 0.264 83.9 131.0 115.9 -5.0 1.5 5.3 3.1 14 14 A W T >>< + 0 0 132 -5,-1.8 3,-2.8 1,-0.3 4,-0.9 0.767 61.7 74.9 -39.2 -42.0 3.1 3.1 0.4 15 15 A E H >> S+ 0 0 160 1,-0.3 4,-2.5 2,-0.2 3,-0.7 0.802 83.9 64.1 -50.8 -34.6 6.3 5.2 0.5 16 16 A G H <4 S+ 0 0 59 -3,-2.1 -1,-0.3 1,-0.3 -2,-0.2 0.681 109.5 40.4 -66.1 -18.7 7.2 3.5 3.8 17 17 A M H <4 S+ 0 0 137 -3,-2.8 -1,-0.3 -4,-0.3 -2,-0.2 0.448 106.7 62.3-102.4 -9.4 7.5 0.2 1.8 18 18 A I H << S+ 0 0 103 -4,-0.9 -2,-0.2 -3,-0.7 -3,-0.2 0.880 97.9 75.1 -71.7 -43.1 9.1 2.0 -1.2 19 19 A D < 0 0 130 -4,-2.5 -3,-0.0 1,-0.2 0, 0.0 -0.006 360.0 360.0 -58.1 167.4 11.9 2.8 1.4 20 20 A G 0 0 117 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 -0.307 360.0 360.0 74.8 360.0 14.4 0.0 2.4