==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 28-MAR-01 1IBO . COMPND 2 MOLECULE: HEMAGGLUTININ HA2 CHAIN PEPTIDE; . SOURCE 2 SYNTHETIC: YES; . AUTHOR X.HAN,J.H.BUSHWELLER,D.S.CAFISO,L.K.TAMM . 20 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2046.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 10 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 35.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G > 0 0 103 0, 0.0 4,-2.7 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 154.9 -13.8 -1.8 -0.8 2 2 A L H > + 0 0 144 2,-0.2 4,-2.5 1,-0.2 5,-0.1 0.876 360.0 46.2 -56.4 -48.0 -10.8 -4.0 0.2 3 3 A F H > S+ 0 0 175 1,-0.2 4,-3.2 2,-0.2 5,-0.2 0.913 113.6 50.4 -63.6 -46.1 -8.7 -3.4 -3.0 4 4 A G H > S+ 0 0 49 2,-0.2 4,-2.2 1,-0.2 -2,-0.2 0.917 111.6 47.8 -52.3 -51.3 -9.4 0.3 -2.7 5 5 A A H X S+ 0 0 66 -4,-2.7 4,-2.8 2,-0.2 -2,-0.2 0.882 113.6 48.5 -61.9 -39.1 -8.3 0.2 1.0 6 6 A I H X S+ 0 0 86 -4,-2.5 4,-1.8 2,-0.2 -2,-0.2 0.972 113.7 44.4 -63.6 -63.1 -5.2 -1.8 0.1 7 7 A A H < S+ 0 0 50 -4,-3.2 -2,-0.2 2,-0.2 -1,-0.2 0.798 114.0 52.6 -57.0 -29.4 -4.2 0.6 -2.8 8 8 A G H >< S+ 0 0 39 -4,-2.2 3,-1.7 -5,-0.2 -2,-0.2 0.964 109.2 47.7 -64.7 -53.4 -5.0 3.5 -0.4 9 9 A F H >X>S+ 0 0 98 -4,-2.8 4,-2.8 1,-0.3 3,-2.1 0.788 96.5 75.3 -52.9 -30.8 -2.7 2.0 2.2 10 10 A I T 3<5S+ 0 0 62 -4,-1.8 -1,-0.3 1,-0.3 -2,-0.2 0.597 108.3 30.2 -64.7 -14.0 -0.0 1.6 -0.5 11 11 A E T <45S+ 0 0 180 -3,-1.7 -1,-0.3 -4,-0.2 -2,-0.2 0.121 130.3 38.4-122.5 9.7 0.6 5.4 -0.4 12 12 A N T <45S+ 0 0 146 -3,-2.1 -2,-0.2 -4,-0.1 -3,-0.2 0.659 131.6 9.2-140.4 -41.5 -0.2 5.9 3.3 13 13 A G T <5S+ 0 0 47 -4,-2.8 -3,-0.2 -5,-0.1 -4,-0.1 0.135 94.0 143.5-129.1 12.0 1.0 3.0 5.6 14 14 A W < + 0 0 94 -5,-1.0 2,-0.2 2,-0.0 -4,-0.1 -0.107 23.3 168.7 -62.5 153.4 3.1 1.2 3.0 15 15 A E + 0 0 120 2,-0.0 -5,-0.0 4,-0.0 -2,-0.0 -0.739 53.3 77.9-161.9 116.7 6.4 -0.7 3.3 16 16 A G S S+ 0 0 54 -2,-0.2 -6,-0.0 -6,-0.1 -2,-0.0 0.115 101.6 38.0 172.6 -3.4 7.7 -2.9 0.5 17 17 A M S S+ 0 0 163 0, 0.0 -3,-0.0 0, 0.0 -2,-0.0 0.263 93.1 76.9-144.4 12.1 9.0 -0.2 -1.9 18 18 A I + 0 0 97 2,-0.0 2,-1.1 0, 0.0 0, 0.0 -0.054 64.6 152.3-103.4 33.4 10.6 2.5 0.4 19 19 A D 0 0 156 1,-0.3 -4,-0.0 0, 0.0 0, 0.0 -0.462 360.0 360.0 -74.3 91.0 13.5 -0.1 0.7 20 20 A G 0 0 117 -2,-1.1 -1,-0.3 0, 0.0 -2,-0.0 0.193 360.0 360.0 125.9 360.0 16.5 2.2 1.4