==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 13-APR-01 1IFW . COMPND 2 MOLECULE: POLYADENYLATE-BINDING PROTEIN, CYTOPLASMIC AND . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR G.KOZLOV,N.SIDDIQUI,S.COILLET-MATILLON,T.SPRULES,I.EKIEL, . 92 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7780.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 75.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 10.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 15.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 42 45.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 82 0, 0.0 3,-0.3 0, 0.0 4,-0.2 0.000 360.0 360.0 360.0-154.9 -23.7 -0.2 -15.4 2 2 A P + 0 0 105 0, 0.0 6,-0.0 0, 0.0 0, 0.0 0.354 360.0 76.9 -74.0 7.8 -26.7 -0.4 -13.0 3 3 A L S S+ 0 0 161 1,-0.1 0, 0.0 0, 0.0 0, 0.0 0.960 110.3 14.0 -81.5 -60.2 -28.1 2.8 -14.6 4 4 A G S S+ 0 0 67 -3,-0.3 -1,-0.1 0, 0.0 0, 0.0 -0.030 97.8 120.1-107.6 31.0 -29.5 1.6 -17.9 5 5 A S - 0 0 48 -4,-0.2 3,-0.0 1,-0.2 0, 0.0 -0.842 49.0-158.0 -99.5 127.0 -29.5 -2.1 -17.1 6 6 A P S S+ 0 0 122 0, 0.0 2,-0.5 0, 0.0 -1,-0.2 0.972 81.2 50.4 -64.9 -56.7 -32.9 -4.0 -17.1 7 7 A R S S- 0 0 201 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.748 75.9-162.1 -89.6 125.3 -32.0 -6.9 -14.8 8 8 A N - 0 0 107 -2,-0.5 2,-0.1 1,-0.0 0, 0.0 -0.815 23.7-105.1-108.3 147.9 -30.3 -5.9 -11.5 9 9 A A - 0 0 72 -2,-0.3 3,-0.0 1,-0.1 -1,-0.0 -0.390 18.7-150.6 -69.5 144.6 -28.3 -8.1 -9.3 10 10 A N S S+ 0 0 150 1,-0.1 2,-0.4 -2,-0.1 -1,-0.1 0.956 81.4 53.0 -79.4 -56.2 -29.9 -9.3 -6.0 11 11 A D S S- 0 0 140 1,-0.1 2,-1.5 2,-0.0 -1,-0.1 -0.699 79.2-138.9 -86.3 129.3 -26.9 -9.7 -3.8 12 12 A N + 0 0 145 -2,-0.4 2,-0.9 -3,-0.0 3,-0.1 -0.632 30.6 172.6 -88.9 81.9 -24.6 -6.7 -3.6 13 13 A N + 0 0 93 -2,-1.5 3,-0.4 1,-0.2 -2,-0.0 -0.787 13.6 179.0 -95.4 99.7 -21.2 -8.3 -3.7 14 14 A Q S S+ 0 0 130 -2,-0.9 2,-0.9 1,-0.3 3,-0.4 0.716 74.4 75.4 -70.6 -20.4 -18.6 -5.6 -4.0 15 15 A F + 0 0 108 1,-0.2 3,-0.3 -3,-0.1 -1,-0.3 -0.201 66.0 108.8 -86.0 44.9 -15.9 -8.2 -4.0 16 16 A Y S S+ 0 0 186 -2,-0.9 2,-2.0 -3,-0.4 3,-0.3 0.962 72.4 44.6 -82.7 -65.6 -16.7 -9.2 -7.6 17 17 A Q >> + 0 0 103 -3,-0.4 4,-1.9 1,-0.2 3,-0.6 -0.499 65.2 154.6 -82.4 71.9 -13.7 -7.9 -9.6 18 18 A Q H 3> + 0 0 110 -2,-2.0 4,-1.9 -3,-0.3 5,-0.3 0.820 69.9 62.2 -67.7 -31.1 -11.0 -9.2 -7.2 19 19 A K H 34 S+ 0 0 197 -3,-0.3 4,-0.3 1,-0.2 -1,-0.2 0.785 108.2 43.4 -65.1 -26.5 -8.5 -9.2 -10.1 20 20 A Q H <>>S+ 0 0 95 -3,-0.6 4,-1.9 2,-0.2 5,-0.5 0.862 107.2 59.8 -84.7 -40.8 -9.0 -5.5 -10.4 21 21 A R H X5S+ 0 0 33 -4,-1.9 4,-1.6 1,-0.3 -2,-0.2 0.951 114.0 34.9 -51.7 -58.6 -8.8 -4.8 -6.6 22 22 A Q H X5S+ 0 0 141 -4,-1.9 4,-2.2 3,-0.2 -1,-0.3 0.710 112.3 69.4 -70.7 -19.6 -5.3 -6.3 -6.2 23 23 A A H >5S+ 0 0 49 -4,-0.3 4,-0.9 -5,-0.3 3,-0.3 0.998 111.0 24.2 -60.8 -73.2 -4.5 -4.9 -9.7 24 24 A L H X5S+ 0 0 60 -4,-1.9 4,-0.8 1,-0.2 3,-0.5 0.831 120.6 62.4 -63.7 -31.0 -4.5 -1.2 -9.0 25 25 A G H >XX S+ 0 0 59 -4,-0.9 4,-2.3 -3,-0.3 3,-0.9 0.948 115.7 47.3 -69.7 -53.2 3.3 -1.1 -3.6 30 30 A K H 3< S+ 0 0 113 -4,-2.6 4,-0.5 1,-0.3 -2,-0.2 0.819 104.1 63.8 -61.0 -30.6 5.3 -1.0 -6.9 31 31 A K H 3< S+ 0 0 61 -4,-2.1 -1,-0.3 -5,-0.3 -2,-0.2 0.855 109.1 40.7 -61.8 -33.1 5.0 2.8 -6.9 32 32 A V H X< S+ 0 0 2 -3,-0.9 3,-0.9 -4,-0.8 -2,-0.2 0.918 116.3 46.9 -79.1 -47.9 7.1 2.8 -3.7 33 33 A S G >< S+ 0 0 18 -4,-2.3 3,-1.9 1,-0.2 -2,-0.2 0.386 80.0 107.7 -75.2 4.6 9.5 0.0 -4.8 34 34 A A G 3 S+ 0 0 83 -4,-0.5 -1,-0.2 1,-0.3 -2,-0.1 0.690 84.3 44.2 -56.8 -16.6 9.9 1.9 -8.1 35 35 A K G < S- 0 0 145 -3,-0.9 -1,-0.3 1,-0.4 2,-0.3 0.501 132.7 -6.8-104.6 -8.1 13.3 2.9 -6.8 36 36 A T < - 0 0 48 -3,-1.9 -1,-0.4 -4,-0.1 2,-0.2 -0.927 63.1-112.3-178.8 155.7 14.2 -0.6 -5.5 37 37 A S + 0 0 103 -2,-0.3 2,-1.2 -3,-0.1 3,-0.1 -0.147 58.3 147.8 -91.7 40.0 12.8 -4.1 -4.9 38 38 A N >>> - 0 0 48 -2,-0.2 4,-1.9 1,-0.2 5,-0.6 -0.640 29.8-170.3 -79.2 99.0 13.1 -3.8 -1.1 39 39 A E H 3>5S+ 0 0 151 -2,-1.2 4,-0.6 1,-0.3 -1,-0.2 0.794 90.7 48.3 -59.3 -27.9 10.1 -5.8 0.1 40 40 A E H 345S+ 0 0 91 3,-0.1 4,-0.5 2,-0.1 -1,-0.3 0.741 113.0 49.4 -83.1 -25.4 10.8 -4.4 3.6 41 41 A A H X>5S+ 0 0 1 -3,-0.5 4,-1.5 2,-0.2 3,-1.5 0.986 118.2 31.9 -75.4 -70.5 11.0 -0.8 2.2 42 42 A A H 3X5S+ 0 0 0 -4,-1.9 4,-3.1 1,-0.3 5,-0.2 0.817 115.2 63.2 -59.7 -29.5 7.9 -0.5 0.0 43 43 A G H 3X S+ 0 0 85 -3,-1.5 4,-0.9 -4,-0.5 3,-0.3 0.968 116.1 36.4 -72.9 -55.9 6.6 -0.2 5.1 45 45 A I H >X S+ 0 0 1 -4,-1.5 4,-2.6 1,-0.2 3,-0.8 0.874 110.5 63.3 -64.8 -39.2 5.2 2.7 3.2 46 46 A T H 3X S+ 0 0 23 -4,-3.1 4,-0.5 1,-0.3 -1,-0.2 0.887 99.6 54.7 -53.6 -40.3 2.5 0.5 1.6 47 47 A G H 3< S+ 0 0 46 -4,-1.0 -1,-0.3 -3,-0.3 -2,-0.2 0.838 109.1 48.2 -63.2 -32.6 1.2 -0.1 5.1 48 48 A M H X< S+ 0 0 93 -4,-0.9 3,-0.9 -3,-0.8 -2,-0.2 0.953 115.0 42.0 -71.9 -51.0 0.8 3.6 5.6 49 49 A I H >< S+ 0 0 0 -4,-2.6 3,-1.3 1,-0.3 -1,-0.2 0.477 92.5 90.7 -74.3 -0.4 -0.9 4.3 2.3 50 50 A L T 3< + 0 0 105 -4,-0.5 -1,-0.3 -5,-0.3 -2,-0.1 0.377 60.5 89.7 -76.1 6.4 -2.9 1.1 3.0 51 51 A D T < S+ 0 0 138 -3,-0.9 -1,-0.3 2,-0.1 -2,-0.1 0.742 70.8 81.6 -74.5 -22.6 -5.4 3.5 4.7 52 52 A L S < S- 0 0 25 -3,-1.3 5,-0.2 1,-0.1 -3,-0.0 -0.728 91.7-111.6 -87.7 127.2 -7.2 3.9 1.4 53 53 A P > - 0 0 70 0, 0.0 4,-1.7 0, 0.0 5,-0.2 0.111 38.7 -90.6 -47.8 168.3 -9.6 1.0 0.6 54 54 A P H > S+ 0 0 54 0, 0.0 4,-0.6 0, 0.0 3,-0.2 0.943 127.0 23.5 -48.6 -60.2 -8.9 -1.4 -2.3 55 55 A Q H >4 S+ 0 0 79 1,-0.2 3,-0.9 2,-0.2 -3,-0.0 0.874 119.4 60.8 -76.4 -38.6 -10.7 0.6 -5.0 56 56 A E H 34 S+ 0 0 122 1,-0.3 4,-0.3 2,-0.2 -1,-0.2 0.696 102.7 54.8 -62.2 -18.3 -10.5 3.9 -3.1 57 57 A V H >X S+ 0 0 4 -4,-1.7 4,-3.2 -5,-0.2 3,-0.9 0.755 88.8 77.9 -85.5 -26.6 -6.7 3.6 -3.3 58 58 A F H - 0 0 28 -3,-1.4 4,-1.6 -4,-0.2 5,-0.1 -0.906 63.4-155.7-108.6 124.4 -1.6 10.1 -9.3 64 64 A D H > S+ 0 0 108 -2,-0.5 4,-2.8 2,-0.2 -1,-0.2 0.928 98.1 45.6 -59.0 -48.8 1.9 11.3 -8.7 65 65 A E H > S+ 0 0 152 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.922 111.3 52.4 -61.8 -45.6 0.8 14.3 -6.6 66 66 A L H > S+ 0 0 84 1,-0.2 4,-1.2 2,-0.2 -1,-0.2 0.802 113.4 46.2 -60.8 -29.8 -1.7 12.2 -4.6 67 67 A F H X>S+ 0 0 9 -4,-1.6 4,-4.1 -7,-0.2 5,-0.5 0.939 103.7 59.3 -78.3 -51.3 1.2 9.8 -3.9 68 68 A E H X5S+ 0 0 96 -4,-2.8 4,-0.8 1,-0.2 7,-0.2 0.882 108.9 46.1 -44.0 -49.8 3.8 12.3 -2.9 69 69 A Q H X5S+ 0 0 133 -4,-1.7 4,-1.1 2,-0.2 3,-0.3 0.977 122.6 32.9 -59.8 -60.4 1.6 13.6 -0.1 70 70 A H H X5S+ 0 0 80 -4,-1.2 4,-1.3 1,-0.2 3,-0.2 0.963 123.6 45.9 -62.7 -52.6 0.6 10.2 1.4 71 71 A Y H X5S+ 0 0 61 -4,-4.1 4,-2.2 1,-0.2 -1,-0.2 0.638 101.2 76.5 -65.3 -12.4 3.9 8.6 0.5 72 72 A K H XX S+ 0 0 23 -4,-2.2 4,-1.3 -3,-0.4 3,-0.9 0.963 97.3 55.2 -59.0 -54.0 8.9 8.3 2.9 76 76 A A H 3X S+ 0 0 62 -4,-1.8 4,-1.3 1,-0.3 -1,-0.2 0.866 110.9 47.3 -46.8 -38.7 10.5 9.8 6.0 77 77 A A H 3X S+ 0 0 19 -4,-0.9 4,-3.7 -5,-0.2 5,-0.4 0.806 98.6 72.6 -72.7 -29.7 10.0 6.4 7.6 78 78 A Y H + 0 0 75 -2,-0.7 3,-0.6 -3,-0.3 4,-0.3 -0.306 12.5 137.4 -85.5 53.1 16.6 -2.1 10.0 86 86 A E T 3 + 0 0 142 -2,-1.4 -1,-0.2 1,-0.2 -2,-0.1 0.478 65.0 64.6 -76.6 -1.5 18.4 -3.8 12.9 87 87 A Q T 3 S+ 0 0 177 -3,-0.3 -1,-0.2 1,-0.2 -2,-0.1 0.755 94.3 56.0 -90.2 -29.4 15.2 -5.9 13.4 88 88 A Q S < S+ 0 0 96 -3,-0.6 2,-1.3 1,-0.1 -2,-0.2 0.509 83.8 97.8 -80.3 -4.7 15.6 -7.7 10.0 89 89 A T - 0 0 94 -4,-0.3 2,-0.2 0, 0.0 -1,-0.1 -0.690 69.4-152.3 -88.7 90.4 19.1 -8.8 11.0 90 90 A E - 0 0 171 -2,-1.3 2,-0.1 1,-0.1 -2,-0.1 -0.442 11.0-141.9 -65.7 127.3 18.4 -12.3 12.3 91 91 A Q 0 0 165 -2,-0.2 -1,-0.1 1,-0.1 0, 0.0 -0.453 360.0 360.0 -88.1 163.0 21.0 -13.3 14.9 92 92 A A 0 0 147 -2,-0.1 -1,-0.1 0, 0.0 -2,-0.1 0.227 360.0 360.0-101.3 360.0 22.6 -16.8 15.2