==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=1-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 16-DEC-98 2IFE . COMPND 2 MOLECULE: PROTEIN (TRANSLATION INITIATION FACTOR IF3); . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR E.DE COCK,C.GARCIA,F.DARDEL . 91 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6078.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 67.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 8 8.8 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 8.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 9.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 25.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 90 A V 0 0 167 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-171.5 -3.3 16.6 11.9 2 91 A I - 0 0 97 31,-0.1 31,-0.2 2,-0.0 2,-0.2 -0.811 360.0-156.8 -92.2 126.6 -2.9 13.7 9.6 3 92 A Q E -a 33 0A 82 29,-0.6 31,-2.9 -2,-0.5 2,-0.7 -0.494 17.7-116.1 -96.0 167.9 0.7 12.7 9.0 4 93 A V E +a 34 0A 80 29,-0.2 2,-0.2 -2,-0.2 31,-0.2 -0.944 41.7 162.2-102.0 114.3 2.2 10.9 6.1 5 94 A K E -a 35 0A 81 29,-1.9 31,-2.7 -2,-0.7 2,-0.3 -0.654 21.6-145.7-108.9-179.8 3.8 7.7 7.2 6 95 A E E -a 36 0A 91 29,-0.3 2,-0.3 -2,-0.2 31,-0.2 -0.940 18.9-170.9-143.8 158.4 4.7 4.9 4.9 7 96 A I E -a 37 0A 22 29,-2.1 31,-1.6 -2,-0.3 2,-0.3 -0.913 20.0-139.9-135.3 162.2 4.9 1.1 4.4 8 97 A K E -a 38 0A 98 -2,-0.3 2,-0.3 29,-0.2 31,-0.2 -0.939 10.2-166.7-120.9 157.3 6.4 -0.8 1.5 9 98 A F E -a 39 0A 1 29,-1.7 31,-0.6 -2,-0.3 47,-0.1 -0.867 17.0-175.7-136.9 100.3 5.3 -4.0 -0.2 10 99 A R > - 0 0 155 -2,-0.3 3,-1.0 29,-0.2 2,-0.2 -0.335 40.4 -82.8 -85.5 171.3 8.1 -5.4 -2.4 11 100 A P T 3 S+ 0 0 46 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.618 119.0 42.9 -74.5 140.9 7.7 -8.4 -4.7 12 101 A G T 3 S+ 0 0 77 -2,-0.2 2,-0.8 1,-0.2 5,-0.1 0.486 82.7 120.3 93.4 9.9 8.1 -11.6 -2.8 13 102 A T < + 0 0 9 -3,-1.0 2,-0.2 4,-0.1 -1,-0.2 -0.882 38.5 149.1-106.0 92.8 6.0 -10.1 -0.0 14 103 A D >> - 0 0 83 -2,-0.8 3,-2.1 -3,-0.1 4,-1.5 -0.742 62.5 -53.6-128.7 174.9 3.2 -12.5 0.2 15 104 A E H 3> S+ 0 0 81 1,-0.3 4,-1.7 -2,-0.2 5,-0.4 0.369 127.9 52.7 -27.3 -56.2 0.9 -13.7 2.9 16 105 A G H 34 S+ 0 0 64 1,-0.2 -1,-0.3 2,-0.2 4,-0.2 0.829 128.5 16.7 -21.3 -75.1 3.6 -14.8 5.3 17 106 A D H <> S+ 0 0 75 -3,-2.1 4,-0.9 -5,-0.1 -1,-0.2 0.651 125.5 63.1 -81.6 -33.1 5.6 -11.6 5.4 18 107 A Y H >< S+ 0 0 0 -4,-1.5 3,-1.1 2,-0.2 4,-0.2 0.975 99.9 40.0 -74.0 -71.2 2.9 -9.6 4.0 19 108 A Q T 3X S+ 0 0 45 -4,-1.7 4,-1.0 1,-0.3 -1,-0.2 0.561 107.0 67.0 -60.6 -14.1 -0.1 -9.5 6.2 20 109 A V H 3> S+ 0 0 82 -5,-0.4 4,-1.1 2,-0.2 -1,-0.3 0.888 109.2 38.5 -60.7 -47.8 2.2 -9.3 9.2 21 110 A K H S+ 0 0 2 2,-0.2 4,-1.6 -4,-0.2 -1,-0.2 0.734 102.9 50.7 -84.1 -32.8 -0.5 -5.3 6.9 23 112 A R H X S+ 0 0 166 -4,-1.0 4,-1.8 2,-0.2 -2,-0.3 0.888 110.0 48.8 -61.9 -42.8 -0.8 -5.4 10.6 24 113 A S H X S+ 0 0 17 -4,-1.1 4,-1.5 1,-0.2 -2,-0.2 0.908 110.7 50.2 -61.6 -41.3 2.1 -2.9 10.7 25 114 A L H X S+ 0 0 0 -4,-1.2 4,-1.9 2,-0.2 -1,-0.2 0.757 104.9 56.2 -70.1 -29.3 0.2 -0.8 8.1 26 115 A I H X S+ 0 0 25 -4,-1.6 4,-2.2 2,-0.2 5,-0.2 0.957 104.7 55.9 -55.5 -53.1 -3.0 -0.9 10.2 27 116 A R H X S+ 0 0 103 -4,-1.8 4,-1.0 1,-0.2 -2,-0.2 0.812 107.0 48.1 -47.3 -48.9 -0.9 0.5 13.0 28 117 A F H ><>S+ 0 0 56 -4,-1.5 5,-0.6 1,-0.2 3,-0.6 0.930 116.4 41.7 -56.8 -55.7 0.1 3.5 10.8 29 118 A L H 3<5S+ 0 0 6 -4,-1.9 3,-0.4 1,-0.2 4,-0.3 0.770 112.7 55.6 -54.9 -36.2 -3.4 4.2 9.7 30 119 A E H 3<5S+ 0 0 116 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.551 95.8 62.9 -89.1 -14.9 -4.8 3.6 13.2 31 120 A E T <<5S- 0 0 137 -4,-1.0 -1,-0.3 -3,-0.6 -2,-0.2 0.700 128.7-102.4 -67.6 -24.9 -2.5 6.2 14.7 32 121 A G T 5S+ 0 0 25 -4,-0.4 -29,-0.6 -3,-0.4 2,-0.3 0.837 79.1 134.2 93.4 57.5 -4.4 8.5 12.4 33 122 A D E < -a 3 0A 10 -5,-0.6 2,-0.7 -4,-0.3 -1,-0.3 -0.857 64.1-113.3-126.5 167.7 -1.9 8.8 9.7 34 123 A K E -a 4 0A 33 -31,-2.9 -29,-1.9 -2,-0.3 2,-0.7 -0.921 37.1-148.9-101.5 115.6 -2.3 8.6 6.1 35 124 A A E -a 5 0A 0 -2,-0.7 50,-0.9 50,-0.3 2,-0.6 -0.829 6.4-153.1-101.8 115.7 -0.3 5.6 5.4 36 125 A K E -aB 6 84A 67 -31,-2.7 -29,-2.1 -2,-0.7 2,-0.4 -0.771 3.7-148.8 -97.4 121.6 1.4 5.6 2.0 37 126 A I E -aB 7 83A 0 46,-1.8 46,-1.5 -2,-0.6 2,-0.5 -0.707 12.1-165.5 -84.0 134.2 2.1 2.3 0.3 38 127 A T E -aB 8 82A 5 -31,-1.6 -29,-1.7 -2,-0.4 2,-0.3 -0.986 4.8-156.0-119.6 124.1 5.1 2.3 -1.8 39 128 A L E -a 9 0A 0 42,-2.1 2,-0.3 -2,-0.5 42,-0.3 -0.686 5.0-168.1 -88.0 155.8 5.6 -0.5 -4.2 40 129 A R - 0 0 91 -31,-0.6 40,-0.2 -2,-0.3 2,-0.1 -0.824 16.2-160.7-152.1 91.5 9.2 -1.1 -5.2 41 130 A F - 0 0 10 38,-0.9 2,-1.2 -2,-0.3 -31,-0.1 -0.407 31.5-128.5 -76.1 151.4 9.1 -3.4 -8.1 42 131 A R S S+ 0 0 222 -2,-0.1 2,-0.2 38,-0.0 9,-0.1 -0.875 94.8 59.0 -82.7 92.6 11.8 -5.5 -9.4 43 132 A G S S- 0 0 28 -2,-1.2 2,-0.2 36,-0.2 4,-0.1 -0.803 80.1 -92.5 176.1-150.2 10.8 -3.8 -12.5 44 133 A R > - 0 0 157 -2,-0.2 3,-0.9 34,-0.1 4,-0.2 -0.570 65.4 -50.2-150.8-164.2 10.3 -0.7 -14.6 45 134 A E T 3 S+ 0 0 130 1,-0.4 31,-0.5 -2,-0.2 2,-0.3 0.738 145.7 23.3 -67.7 -29.4 7.7 1.9 -15.6 46 135 A M T 3 S+ 0 0 118 1,-0.1 -1,-0.4 29,-0.1 33,-0.1 -0.778 85.8 152.9-126.3 93.4 5.5 -1.0 -16.3 47 136 A A < + 0 0 21 -3,-0.9 2,-0.2 -2,-0.3 -2,-0.1 0.948 58.1 7.1 -68.1 -57.0 7.1 -3.6 -14.1 48 137 A H - 0 0 15 -4,-0.2 -5,-0.0 -3,-0.1 -7,-0.0 -0.487 25.7-167.7-118.4 172.1 4.3 -5.8 -13.5 49 138 A Q S S+ 0 0 157 -2,-0.2 -1,-0.1 -3,-0.0 -2,-0.0 0.030 110.6 31.0-134.2 4.6 0.8 -6.8 -14.1 50 139 A Q S > S+ 0 0 134 3,-0.1 4,-1.4 2,-0.0 5,-0.3 0.750 106.3 62.9-120.8 -57.4 1.3 -9.0 -11.1 51 140 A I H > S+ 0 0 38 1,-0.2 4,-0.6 2,-0.2 5,-0.2 0.799 110.9 32.8 -52.4 -48.3 3.6 -7.5 -8.6 52 141 A G H > S+ 0 0 0 1,-0.1 4,-2.3 2,-0.1 3,-0.3 0.977 117.0 43.2 -79.6 -60.9 1.8 -4.4 -7.8 53 142 A M H 4 S+ 0 0 61 1,-0.3 -2,-0.2 2,-0.2 -1,-0.1 0.380 107.7 56.9 -89.5 0.1 -1.9 -5.0 -7.9 54 143 A E H X S+ 0 0 114 -4,-1.4 4,-1.5 3,-0.1 -1,-0.3 0.875 118.1 35.4 -67.8 -50.4 -2.0 -8.2 -6.2 55 144 A V H >X S+ 0 0 9 -4,-0.6 4,-1.1 -5,-0.3 3,-0.8 0.989 121.1 42.4 -67.8 -69.2 -0.4 -6.8 -3.3 56 145 A L H 3X S+ 0 0 0 -4,-2.3 4,-2.4 1,-0.3 -3,-0.2 0.780 116.4 49.0 -42.2 -53.3 -1.8 -3.3 -3.2 57 146 A N H 3> S+ 0 0 70 -5,-0.3 4,-1.8 1,-0.2 -1,-0.3 0.790 113.3 46.0 -62.9 -36.2 -5.3 -4.4 -4.0 58 147 A R H < S+ 0 0 76 -4,-2.0 3,-0.5 1,-0.1 -1,-0.2 0.902 122.7 39.9 -72.7 -40.1 -7.9 -6.6 3.7 63 152 A L H >X S+ 0 0 0 -4,-2.8 3,-2.5 1,-0.2 4,-2.2 0.661 83.1 107.4 -80.2 -20.0 -7.5 -3.2 5.4 64 153 A Q T 3< + 0 0 85 -4,-2.4 -1,-0.2 1,-0.3 -3,-0.1 0.434 68.9 68.6 -26.4 -27.0 -10.7 -1.9 3.9 65 154 A E T <4 S+ 0 0 145 -3,-0.5 -1,-0.3 -4,-0.1 -2,-0.1 0.921 122.1 7.1 -55.3 -59.0 -12.3 -2.2 7.3 66 155 A L T <4 S+ 0 0 68 -3,-2.5 22,-1.4 1,-0.2 2,-0.4 0.822 130.3 42.5-102.4 -52.1 -10.3 0.5 8.8 67 156 A A E < -C 87 0B 0 -4,-2.2 2,-0.4 20,-0.2 -1,-0.2 -0.822 56.4-167.4-100.3 141.4 -8.4 2.1 6.0 68 157 A V E -C 86 0B 33 18,-0.8 18,-2.0 -2,-0.4 2,-0.1 -0.991 21.8-120.6-123.9 164.2 -9.2 3.0 2.6 69 158 A V E -C 85 0B 10 -2,-0.4 16,-0.3 16,-0.3 3,-0.1 -0.345 7.6-140.2 -84.1 153.5 -7.1 4.0 -0.2 70 159 A E S S- 0 0 127 14,-2.2 2,-0.3 1,-0.4 15,-0.1 0.857 82.6 -6.4 -82.3 -41.2 -7.2 7.2 -2.0 71 160 A S - 0 0 61 13,-0.9 13,-0.4 -3,-0.0 -1,-0.4 -0.984 53.8-128.7-152.4 151.2 -6.6 5.8 -5.4 72 161 A F - 0 0 47 -2,-0.3 11,-0.1 1,-0.2 -19,-0.0 -0.954 44.0-168.3 -99.9 104.4 -5.8 2.5 -7.0 73 162 A P + 0 0 32 0, 0.0 -1,-0.2 0, 0.0 10,-0.1 0.810 19.6 173.4 -74.2 -44.8 -3.1 4.3 -8.8 74 163 A T + 0 0 63 -3,-0.1 2,-0.4 1,-0.1 9,-0.1 0.535 48.0 104.9 8.2 50.4 -1.8 2.0 -11.5 75 164 A K - 0 0 177 7,-0.2 2,-0.3 2,-0.0 7,-0.2 -0.934 62.8-151.8-129.3 105.2 0.4 4.6 -13.0 76 165 A I - 0 0 28 -31,-0.5 2,-0.6 -2,-0.4 5,-0.2 -0.592 5.0-156.5 -81.8 141.6 4.0 3.7 -12.0 77 166 A E - 0 0 164 3,-1.4 3,-0.3 -2,-0.3 2,-0.2 -0.952 67.1 -31.2-119.3 105.9 6.5 6.4 -11.7 78 167 A G S S- 0 0 35 -2,-0.6 -34,-0.1 1,-0.2 -2,-0.0 -0.586 116.8 -35.1 81.8-152.3 9.9 5.0 -12.1 79 168 A R S S+ 0 0 147 -2,-0.2 -38,-0.9 -36,-0.1 2,-0.3 -0.168 128.8 59.1 -95.5 33.8 10.6 1.4 -11.0 80 169 A Q - 0 0 61 -3,-0.3 -3,-1.4 -40,-0.2 2,-0.4 -0.971 68.3-145.8-165.8 144.9 8.2 1.8 -8.1 81 170 A M - 0 0 0 -42,-0.3 -42,-2.1 -2,-0.3 2,-0.6 -0.943 7.4-146.2-134.9 118.7 4.5 2.7 -7.6 82 171 A I E -B 38 0A 53 -2,-0.4 2,-0.5 -44,-0.2 -44,-0.2 -0.674 10.3-172.9 -82.5 123.9 2.9 4.6 -4.8 83 172 A M E -B 37 0A 0 -46,-1.5 -46,-1.8 -2,-0.6 2,-0.4 -0.954 24.0-140.7-101.1 130.3 -0.6 3.6 -3.9 84 173 A V E -B 36 0A 26 -2,-0.5 -14,-2.2 -13,-0.4 -13,-0.9 -0.809 18.9-168.2 -99.2 134.9 -1.7 6.2 -1.5 85 174 A L E +C 69 0B 1 -50,-0.9 -50,-0.3 -2,-0.4 -16,-0.3 -0.948 10.1 169.5-129.2 143.7 -3.7 4.9 1.5 86 175 A A E -C 68 0B 8 -18,-2.0 -18,-0.8 -2,-0.4 2,-0.2 -0.741 43.8 -70.2-132.0 178.4 -5.6 7.0 4.0 87 176 A P E -C 67 0B 40 0, 0.0 2,-0.4 0, 0.0 -20,-0.2 -0.517 64.3 -95.5 -62.7 148.2 -8.1 6.8 6.8 88 177 A K - 0 0 106 -22,-1.4 2,-0.3 -2,-0.2 -19,-0.1 -0.595 50.9-117.3 -74.0 125.3 -11.5 5.7 5.6 89 178 A K - 0 0 119 -2,-0.4 2,-0.4 1,-0.1 -1,-0.1 -0.489 13.2-133.0 -77.0 126.9 -13.3 9.0 5.2 90 179 A K 0 0 198 -2,-0.3 -1,-0.1 1,-0.0 0, 0.0 -0.669 360.0 360.0 -72.4 127.0 -16.3 9.8 7.2 91 180 A Q 0 0 267 -2,-0.4 -1,-0.0 0, 0.0 0, 0.0 -0.642 360.0 360.0 -74.7 360.0 -18.9 11.2 4.8