==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 17-APR-01 1IG4 . COMPND 2 MOLECULE: METHYL-CPG BINDING PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR I.OHKI,N.SHIMOTAKE,N.FUJITA,J.-G.JEE,T.IKEGAMI,M.NAKAO, . 75 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5667.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 38 50.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 20.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 12.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 219 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-166.6 -8.1 15.6 2.9 2 2 A A - 0 0 80 2,-0.1 3,-0.1 1,-0.0 0, 0.0 0.973 360.0-176.1 52.7 80.1 -6.1 13.9 5.7 3 3 A E - 0 0 134 1,-0.1 2,-0.1 16,-0.0 17,-0.1 0.992 64.0 -38.9 -71.5 -61.9 -8.3 10.8 6.3 4 4 A D - 0 0 96 15,-0.1 2,-0.7 2,-0.0 15,-0.6 -0.495 57.3-172.6-169.4 92.1 -6.5 9.2 9.3 5 5 A W E +A 18 0A 75 13,-0.2 2,-0.3 -2,-0.1 13,-0.2 -0.794 14.9 179.2 -94.4 113.0 -2.7 9.2 9.5 6 6 A L E -A 17 0A 68 11,-3.6 11,-3.6 -2,-0.7 -2,-0.0 -0.806 33.6 -96.5-111.4 154.2 -1.5 7.0 12.5 7 7 A D E -A 16 0A 124 -2,-0.3 9,-0.2 9,-0.2 -1,-0.1 -0.036 30.1-149.7 -58.1 170.5 2.1 6.3 13.6 8 8 A C >> + 0 0 4 7,-0.8 3,-1.1 4,-0.3 4,-0.7 -0.642 21.0 174.4-150.2 87.8 3.7 3.0 12.4 9 9 A P T 34 + 0 0 91 0, 0.0 59,-0.2 0, 0.0 -1,-0.1 0.520 61.8 98.0 -71.1 -5.3 6.3 1.5 14.8 10 10 A A T 34 S+ 0 0 1 57,-0.9 58,-0.2 1,-0.1 51,-0.1 0.713 105.4 9.5 -58.8 -14.8 6.5 -1.6 12.5 11 11 A L T <4 S- 0 0 43 -3,-1.1 -1,-0.1 1,-0.3 26,-0.0 0.580 115.9 -75.3-127.3 -68.9 9.6 0.1 11.0 12 12 A G >< - 0 0 27 -4,-0.7 3,-0.9 0, 0.0 -1,-0.3 -0.944 65.6 -34.4-175.0-166.2 10.9 3.1 12.9 13 13 A P T 3 S+ 0 0 128 0, 0.0 3,-0.1 0, 0.0 -6,-0.0 -0.489 117.5 34.1 -73.8 138.7 10.4 6.8 13.6 14 14 A G T 3 S+ 0 0 45 1,-0.4 22,-0.1 -2,-0.2 0, 0.0 -0.064 84.8 122.2 109.3 -35.1 8.9 8.9 10.7 15 15 A W < - 0 0 6 -3,-0.9 -7,-0.8 -7,-0.2 -1,-0.4 -0.293 41.2-168.5 -62.4 145.9 6.7 6.1 9.2 16 16 A K E -AB 7 36A 69 20,-1.7 20,-1.8 21,-0.2 2,-0.3 -0.995 4.5-162.9-139.5 132.5 3.0 6.8 9.0 17 17 A R E -AB 6 35A 31 -11,-3.6 -11,-3.6 -2,-0.4 2,-0.3 -0.844 6.7-172.8-115.2 152.9 0.1 4.4 8.3 18 18 A R E -AB 5 34A 57 16,-2.2 16,-1.1 -2,-0.3 2,-0.4 -0.955 17.3-130.7-140.0 160.2 -3.5 5.1 7.2 19 19 A E E - B 0 33A 97 -15,-0.6 2,-0.4 -2,-0.3 14,-0.2 -0.892 13.7-167.5-114.0 143.1 -6.7 3.2 6.6 20 20 A V E - B 0 32A 38 12,-1.0 12,-3.3 -2,-0.4 2,-1.3 -0.853 8.9-171.8-132.3 101.6 -9.0 3.3 3.5 21 21 A F - 0 0 152 -2,-0.4 8,-0.5 10,-0.3 10,-0.2 -0.211 51.3-107.9 -84.7 50.0 -12.5 1.8 3.7 22 22 A R - 0 0 78 -2,-1.3 -1,-0.2 6,-0.2 6,-0.1 0.182 22.2-135.7 48.6-179.9 -13.0 2.3 -0.1 23 23 A K - 0 0 177 1,-0.4 2,-0.3 -3,-0.1 -1,-0.1 0.515 52.6 -68.3-139.2 -38.4 -15.4 5.0 -1.3 24 24 A S S S+ 0 0 76 0, 0.0 2,-1.0 0, 0.0 -1,-0.4 -0.989 80.5 99.6 167.7-166.1 -17.6 3.5 -4.1 25 25 A G S S- 0 0 86 -2,-0.3 -3,-0.0 1,-0.2 0, 0.0 -0.740 104.1 -48.1 99.6 -91.1 -17.5 2.1 -7.7 26 26 A A S S+ 0 0 97 -2,-1.0 -1,-0.2 0, 0.0 0, 0.0 0.399 136.1 56.7-147.8 -41.9 -17.4 -1.7 -7.4 27 27 A T S > S+ 0 0 47 -3,-0.4 3,-1.5 2,-0.1 -2,-0.1 0.470 77.1 139.9 -77.8 -0.2 -14.7 -2.6 -4.8 28 28 A C T 3 + 0 0 68 1,-0.2 -6,-0.2 -6,-0.1 3,-0.1 -0.094 56.4 41.6 -45.1 138.8 -16.5 -0.3 -2.3 29 29 A G T 3 S+ 0 0 45 -8,-0.5 -1,-0.2 1,-0.4 2,-0.2 0.239 86.2 117.0 104.7 -14.1 -16.5 -1.9 1.2 30 30 A R < - 0 0 154 -3,-1.5 2,-0.6 -9,-0.1 -1,-0.4 -0.593 58.5-137.3 -87.4 150.0 -12.9 -3.1 1.1 31 31 A S - 0 0 36 -10,-0.2 2,-0.5 -2,-0.2 -10,-0.3 -0.909 21.0-177.5-111.0 118.1 -10.3 -1.7 3.6 32 32 A D E -B 20 0A 42 -12,-3.3 -12,-1.0 -2,-0.6 2,-0.6 -0.941 13.5-151.0-116.2 127.9 -6.9 -0.8 2.2 33 33 A T E -B 19 0A 1 -2,-0.5 2,-0.4 -14,-0.2 -14,-0.2 -0.839 13.5-171.2 -99.8 124.3 -4.1 0.5 4.5 34 34 A Y E -B 18 0A 62 -16,-1.1 -16,-2.2 -2,-0.6 2,-0.4 -0.891 3.0-175.4-113.5 142.6 -1.5 2.8 3.0 35 35 A Y E -BC 17 43A 1 8,-1.9 8,-1.4 -2,-0.4 2,-0.3 -0.996 14.6-143.8-139.7 139.9 1.7 4.0 4.7 36 36 A Q E -BC 16 42A 76 -20,-1.8 -20,-1.7 -2,-0.4 6,-0.2 -0.707 34.0 -97.8 -99.6 152.4 4.5 6.4 3.7 37 37 A S - 0 0 0 4,-4.4 -21,-0.2 -2,-0.3 4,-0.2 0.134 40.2 -99.8 -54.2-177.9 8.2 5.9 4.6 38 38 A P S S+ 0 0 40 0, 0.0 -1,-0.1 0, 0.0 -23,-0.1 0.562 111.4 1.6 -86.1 -9.2 9.7 7.6 7.6 39 39 A T S S- 0 0 118 2,-0.1 -24,-0.1 0, 0.0 -25,-0.1 0.328 136.9 -10.0-161.1 14.9 11.3 10.4 5.5 40 40 A G S S+ 0 0 37 1,-0.3 2,-0.2 0, 0.0 -4,-0.0 0.278 89.9 89.3 146.5 81.0 10.5 10.1 1.8 41 41 A D - 0 0 52 -4,-0.2 -4,-4.4 2,-0.0 2,-0.9 -0.670 54.5-134.3 172.7 128.8 8.8 7.1 0.1 42 42 A R E +C 36 0A 128 -6,-0.2 2,-0.4 -2,-0.2 -6,-0.2 -0.798 28.6 179.6 -97.8 105.4 5.2 6.1 -0.7 43 43 A I E +C 35 0A 1 -8,-1.4 -8,-1.9 -2,-0.9 3,-0.1 -0.867 16.0 179.2-106.2 135.6 4.7 2.4 0.2 44 44 A R + 0 0 139 -2,-0.4 2,-0.2 -10,-0.2 -11,-0.1 0.452 68.6 7.3-111.5 -3.3 1.3 0.7 -0.3 45 45 A S S > S- 0 0 35 -10,-0.1 4,-1.1 1,-0.1 5,-0.1 -0.832 88.3 -81.2-155.0-165.2 2.1 -2.8 0.9 46 46 A K H > S+ 0 0 68 -2,-0.2 4,-3.4 2,-0.2 5,-0.3 0.919 123.4 52.4 -78.9 -42.8 4.8 -5.0 2.5 47 47 A V H > S+ 0 0 84 2,-0.2 4,-1.6 1,-0.2 -1,-0.1 0.980 108.8 49.7 -56.6 -54.8 6.8 -5.5 -0.7 48 48 A E H > S+ 0 0 68 1,-0.3 4,-1.6 2,-0.2 3,-0.3 0.909 113.6 48.3 -50.6 -39.0 6.9 -1.7 -1.3 49 49 A L H X S+ 0 0 0 -4,-1.1 4,-1.4 1,-0.2 -1,-0.3 0.930 107.7 53.3 -68.0 -42.7 8.1 -1.5 2.3 50 50 A T H X S+ 0 0 21 -4,-3.4 4,-0.6 1,-0.2 7,-0.3 0.706 106.0 59.1 -65.8 -15.8 10.7 -4.3 1.7 51 51 A R H >< S+ 0 0 180 -4,-1.6 3,-1.0 -3,-0.3 -2,-0.2 0.979 106.0 40.4 -77.8 -62.4 11.9 -2.2 -1.2 52 52 A Y H 3< S+ 0 0 106 -4,-1.6 -2,-0.2 1,-0.3 -1,-0.2 0.777 122.4 46.4 -58.4 -21.9 12.9 1.1 0.5 53 53 A L H 3< S- 0 0 56 -4,-1.4 -1,-0.3 -5,-0.2 -2,-0.2 0.647 122.4-105.1 -94.6 -15.8 14.3 -1.2 3.3 54 54 A G << - 0 0 19 -3,-1.0 3,-0.3 -4,-0.6 -1,-0.2 -0.138 23.7 -91.3 107.5 153.3 16.1 -3.6 0.9 55 55 A P S S+ 0 0 116 0, 0.0 3,-0.2 0, 0.0 -1,-0.1 0.813 125.8 55.5 -70.3 -29.7 15.4 -7.1 -0.3 56 56 A A S S+ 0 0 99 1,-0.2 2,-1.5 -3,-0.1 -2,-0.1 0.759 93.2 74.1 -75.2 -21.6 17.5 -8.5 2.6 57 57 A C S S- 0 0 70 -3,-0.3 -1,-0.2 -7,-0.3 -4,-0.1 -0.447 73.9-179.9 -89.6 66.3 15.3 -6.6 5.1 58 58 A D - 0 0 106 -2,-1.5 3,-0.1 -3,-0.2 -2,-0.1 -0.098 20.1-149.7 -59.5 166.2 12.3 -8.9 4.8 59 59 A L > + 0 0 24 1,-0.1 3,-1.1 3,-0.1 -1,-0.1 -0.433 38.6 145.9-139.5 64.6 9.2 -8.0 7.0 60 60 A T T 3 S+ 0 0 119 1,-0.2 -1,-0.1 3,-0.0 -2,-0.0 0.754 78.2 54.6 -73.5 -21.0 7.3 -11.2 7.9 61 61 A L T 3 S+ 0 0 76 -3,-0.1 9,-0.8 11,-0.1 2,-0.5 0.275 86.7 103.5 -95.1 13.5 6.4 -9.7 11.3 62 62 A F B < -D 69 0B 9 -3,-1.1 2,-0.6 7,-0.2 7,-0.2 -0.819 67.4-138.1 -98.4 130.1 4.8 -6.6 9.7 63 63 A D > - 0 0 62 5,-1.5 4,-2.4 -2,-0.5 5,-0.2 -0.738 9.2-164.2 -88.2 120.3 1.0 -6.3 9.5 64 64 A F T 4 S+ 0 0 75 -2,-0.6 -31,-0.2 1,-0.2 -1,-0.2 0.800 93.5 46.9 -72.8 -26.3 -0.2 -5.0 6.2 65 65 A K T 4 S+ 0 0 116 3,-0.1 -1,-0.2 -33,-0.1 -31,-0.1 0.617 130.8 20.0 -90.1 -12.1 -3.7 -4.3 7.7 66 66 A Q T 4 S- 0 0 96 -3,-0.2 -2,-0.2 2,-0.1 -56,-0.1 0.670 90.4-134.0-123.1 -40.5 -2.3 -2.6 10.9 67 67 A G < + 0 0 0 -4,-2.4 -57,-0.9 1,-0.3 2,-0.3 0.954 60.8 115.6 82.5 56.6 1.3 -1.5 10.1 68 68 A I - 0 0 53 -5,-0.2 -5,-1.5 -59,-0.2 2,-1.3 -0.997 69.0-119.5-154.6 150.6 3.1 -2.7 13.2 69 69 A L B -D 62 0B 67 -2,-0.3 -7,-0.2 1,-0.2 -8,-0.1 -0.649 26.4-173.4 -93.3 83.4 5.8 -5.3 14.2 70 70 A C S S+ 0 0 106 -2,-1.3 -1,-0.2 -9,-0.8 -8,-0.1 0.888 77.2 28.1 -43.1 -45.4 3.8 -7.5 16.6 71 71 A Y - 0 0 141 -10,-0.4 -1,-0.1 1,-0.2 -10,-0.1 -0.976 66.9-163.5-125.2 131.2 7.1 -9.4 17.4 72 72 A P - 0 0 103 0, 0.0 -1,-0.2 0, 0.0 -11,-0.1 0.968 64.3 -28.8 -73.3 -83.8 10.6 -7.9 17.3 73 73 A A - 0 0 58 1,-0.2 0, 0.0 0, 0.0 0, 0.0 -0.973 44.2-137.4-139.0 154.4 13.1 -10.8 17.2 74 74 A P 0 0 125 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 0.983 360.0 360.0 -73.2 -78.6 13.3 -14.3 18.6 75 75 A K 0 0 263 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.892 360.0 360.0-131.8 360.0 16.8 -14.8 20.0