==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=1-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/RNA 27-SEP-06 2IHX . COMPND 2 MOLECULE: NUCLEOCAPSID (NC) PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ROUS SARCOMA VIRUS; . AUTHOR J.ZHOU,M.SUMMERS . 50 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5311.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 21 42.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 8.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 2 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 16.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 15 A G 0 0 115 0, 0.0 2,-2.4 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 89.4 2.1 0.0 -1.2 2 16 A R + 0 0 241 1,-0.2 0, 0.0 2,-0.0 0, 0.0 -0.448 360.0 146.5 -76.4 71.7 5.8 0.1 -0.6 3 17 A A > + 0 0 53 -2,-2.4 3,-2.4 2,-0.1 -1,-0.2 0.258 20.5 149.3 -90.7 11.6 6.7 1.8 -3.9 4 18 A R T 3 + 0 0 190 1,-0.3 3,-0.1 -3,-0.1 12,-0.1 -0.185 61.7 32.9 -48.5 129.6 9.6 3.6 -2.2 5 19 A G T 3 S+ 0 0 28 1,-0.1 9,-2.6 7,-0.1 2,-0.6 0.040 100.7 88.1 109.8 -25.4 12.3 4.2 -4.7 6 20 A L B < S-A 13 0A 106 -3,-2.4 -1,-0.1 7,-0.3 10,-0.1 -0.939 72.5-136.9-112.9 116.4 10.1 4.6 -7.7 7 21 A C - 0 0 5 5,-1.5 9,-0.1 -2,-0.6 -3,-0.0 -0.357 15.5-172.0 -68.3 147.0 8.8 8.1 -8.5 8 22 A Y S S+ 0 0 201 3,-0.2 -1,-0.1 2,-0.1 8,-0.1 0.620 77.1 66.8-111.9 -24.1 5.1 8.3 -9.5 9 23 A T S S+ 0 0 54 1,-0.1 7,-0.0 3,-0.1 -2,-0.0 0.894 130.4 2.2 -65.9 -41.3 4.9 11.9 -10.5 10 24 A C S S- 0 0 59 2,-0.1 -1,-0.1 13,-0.0 -2,-0.1 0.672 101.4-116.9-113.1 -39.4 7.2 11.4 -13.5 11 25 A G + 0 0 45 1,-0.3 -3,-0.2 0, 0.0 5,-0.0 0.772 66.0 131.5 103.1 36.1 7.8 7.7 -13.3 12 26 A S > - 0 0 60 3,-0.1 -5,-1.5 0, 0.0 3,-0.7 -0.978 48.9-131.5-125.5 129.6 11.5 7.5 -12.7 13 27 A P B 3 S+A 6 0A 89 0, 0.0 -7,-0.3 0, 0.0 3,-0.1 -0.158 81.8 56.7 -69.8 167.2 13.3 5.4 -10.0 14 28 A G T 3 S+ 0 0 75 -9,-2.6 2,-0.3 1,-0.1 -8,-0.2 0.028 109.4 39.1 98.7 -27.2 15.9 6.8 -7.6 15 29 A H < - 0 0 31 -3,-0.7 2,-0.2 -10,-0.4 -8,-0.2 -0.885 69.7-134.8-145.1 174.8 13.7 9.6 -6.3 16 30 A Y > - 0 0 62 -2,-0.3 3,-1.7 -9,-0.1 -9,-0.2 -0.710 43.2 -83.3-127.3 178.5 10.1 10.3 -5.3 17 31 A Q G > S+ 0 0 86 1,-0.3 3,-2.0 2,-0.2 6,-0.1 0.883 127.0 59.7 -49.5 -43.3 7.5 13.0 -5.7 18 32 A A G 3 S+ 0 0 101 1,-0.3 -1,-0.3 3,-0.0 -11,-0.0 0.809 119.1 29.6 -56.5 -30.6 9.1 15.0 -2.9 19 33 A Q G < S+ 0 0 151 -3,-1.7 -1,-0.3 3,-0.0 -2,-0.2 -0.065 87.3 142.8-120.0 31.0 12.3 15.0 -5.0 20 34 A C X - 0 0 8 -3,-2.0 3,-1.5 1,-0.1 -3,-0.1 -0.608 43.8-151.5 -78.0 124.9 10.7 14.9 -8.4 21 35 A P T 3 S+ 0 0 109 0, 0.0 -1,-0.1 0, 0.0 -4,-0.1 0.625 97.2 57.5 -69.7 -13.1 12.7 17.1 -10.9 22 36 A K T > S+ 0 0 155 2,-0.1 3,-0.6 -5,-0.0 2,-0.5 0.399 72.6 133.0 -97.4 0.3 9.5 17.7 -12.8 23 37 A K T < + 0 0 83 -3,-1.5 3,-0.1 1,-0.2 4,-0.0 -0.365 40.4 84.4 -56.9 106.6 7.7 19.1 -9.8 24 38 A R T 3 S- 0 0 185 1,-0.5 2,-0.2 -2,-0.5 -1,-0.2 0.083 88.5 -3.6-165.2 -66.9 6.1 22.3 -11.2 25 39 A K S < S+ 0 0 161 -3,-0.6 -1,-0.5 1,-0.1 4,-0.1 -0.682 92.6 65.9-132.6-173.8 2.7 21.9 -12.8 26 40 A S S S+ 0 0 127 -2,-0.2 -1,-0.1 -3,-0.1 3,-0.0 0.934 85.7 91.3 61.0 48.1 0.2 19.2 -13.8 27 41 A G S S- 0 0 57 -3,-0.1 -2,-0.1 -4,-0.0 -1,-0.1 0.407 92.9 -82.1-130.0 -89.9 -0.5 18.3 -10.2 28 42 A N - 0 0 138 0, 0.0 -2,-0.1 0, 0.0 -3,-0.0 0.270 37.0-163.0-154.0 -61.6 -3.3 19.8 -8.1 29 43 A S - 0 0 87 -4,-0.1 13,-0.0 2,-0.0 -3,-0.0 0.934 4.5-171.5 59.3 97.6 -2.5 23.2 -6.5 30 44 A R - 0 0 217 12,-0.0 12,-0.0 0, 0.0 0, 0.0 0.970 66.0 -50.9 -80.8 -68.5 -5.0 23.9 -3.8 31 45 A E S S+ 0 0 125 7,-0.1 9,-1.7 10,-0.0 2,-0.2 0.084 99.0 115.5-164.0 29.9 -4.2 27.5 -2.7 32 46 A R B -B 39 0B 168 7,-0.2 11,-0.5 8,-0.1 2,-0.5 -0.504 59.2-122.9-102.0 173.3 -0.5 27.7 -2.1 33 47 A C > - 0 0 2 5,-2.4 4,-0.5 9,-0.2 9,-0.1 -0.971 15.2-172.4-123.9 117.5 2.2 29.6 -3.9 34 48 A Q T 4 S+ 0 0 119 -2,-0.5 -1,-0.1 1,-0.2 8,-0.0 -0.022 84.4 56.1 -95.0 29.6 5.2 27.8 -5.3 35 49 A L T 4 S+ 0 0 131 3,-0.1 -1,-0.2 0, 0.0 7,-0.0 0.615 125.4 11.5-127.0 -35.7 7.0 31.0 -6.1 36 50 A C T 4 S- 0 0 71 2,-0.1 -2,-0.1 -3,-0.0 3,-0.1 0.100 100.8-112.1-130.7 14.5 7.2 32.9 -2.8 37 51 A N < + 0 0 147 -4,-0.5 -3,-0.2 1,-0.2 6,-0.0 0.724 62.4 166.0 59.5 20.6 6.1 30.0 -0.6 38 52 A G - 0 0 14 -6,-0.1 -5,-2.4 1,-0.1 2,-0.5 -0.216 33.6-138.8 -65.6 157.8 3.0 32.0 0.1 39 53 A M B S+B 32 0B 160 -7,-0.2 -7,-0.2 -3,-0.1 3,-0.1 -0.865 80.4 19.5-124.3 97.4 -0.1 30.4 1.7 40 54 A G S S+ 0 0 35 -9,-1.7 -8,-0.1 1,-0.7 -1,-0.0 -0.294 106.5 63.2 147.3 -57.3 -3.4 31.4 0.1 41 55 A H S S- 0 0 78 1,-0.1 -1,-0.7 -8,-0.0 2,-0.3 -0.140 79.5-105.6 -87.3-173.4 -2.8 32.9 -3.3 42 56 A N > - 0 0 64 -9,-0.1 3,-1.4 1,-0.1 -9,-0.2 -0.866 17.1-122.1-118.5 152.3 -1.5 31.2 -6.5 43 57 A A G > S+ 0 0 28 -11,-0.5 3,-1.8 -2,-0.3 -1,-0.1 0.879 114.4 59.1 -56.5 -40.1 1.9 31.5 -8.2 44 58 A K G 3 S+ 0 0 182 1,-0.3 -1,-0.3 -3,-0.0 -11,-0.1 0.736 115.9 35.5 -62.0 -22.0 0.1 32.6 -11.4 45 59 A Q G < S+ 0 0 140 -3,-1.4 2,-0.5 2,-0.0 -1,-0.3 0.111 89.3 124.4-117.3 18.9 -1.3 35.5 -9.4 46 60 A C < + 0 0 39 -3,-1.8 2,-0.3 -5,-0.1 -3,-0.1 -0.704 34.9 114.7 -85.5 125.5 1.8 36.0 -7.2 47 61 A R - 0 0 167 -2,-0.5 2,-0.3 0, 0.0 -2,-0.0 -0.969 53.7-113.1-176.4 167.2 3.0 39.6 -7.4 48 62 A K + 0 0 163 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.877 22.0 173.2-118.0 150.3 3.5 42.8 -5.5 49 63 A R 0 0 221 -2,-0.3 -1,-0.1 0, 0.0 0, 0.0 0.696 360.0 360.0-115.1 -74.3 1.9 46.2 -5.8 50 64 A D 0 0 178 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 0.798 360.0 360.0-109.0 360.0 2.8 48.8 -3.1