==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIVIRAL PROTEIN 24-APR-01 1IIY . COMPND 2 MOLECULE: CYANOVIRIN-N; . SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC ELLIPSOSPORUM; . AUTHOR C.A.BEWLEY . 101 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6015.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 70 69.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 40 39.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 12.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 13.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A L 0 0 159 0, 0.0 90,-0.2 0, 0.0 89,-0.1 0.000 360.0 360.0 360.0 136.9 -20.8 4.9 234.0 2 2 A G + 0 0 13 88,-0.3 91,-0.3 1,-0.1 90,-0.2 -0.380 360.0 142.5 65.4-142.6 -21.5 4.6 237.7 3 3 A K > + 0 0 112 88,-0.4 3,-3.5 84,-0.2 4,-0.4 0.664 16.3 157.4 78.7 18.7 -25.1 5.8 238.8 4 4 A F G > + 0 0 4 87,-1.6 3,-1.1 1,-0.3 4,-0.4 0.742 62.5 75.9 -47.0 -20.7 -25.4 3.0 241.3 5 5 A S G 3 S+ 0 0 38 1,-0.2 -1,-0.3 2,-0.2 3,-0.2 0.704 79.0 71.0 -70.1 -13.3 -27.9 5.3 243.0 6 6 A Q G < S+ 0 0 127 -3,-3.5 -1,-0.2 1,-0.2 -2,-0.2 0.824 116.7 19.7 -71.6 -27.6 -30.5 4.3 240.3 7 7 A T S < S+ 0 0 38 -3,-1.1 16,-1.8 -4,-0.4 2,-0.3 0.170 116.7 74.4-126.6 19.2 -30.8 0.8 241.7 8 8 A a E +A 22 0A 13 -4,-0.4 2,-0.3 14,-0.2 14,-0.2 -0.937 53.2 177.8-130.1 153.7 -29.5 1.2 245.3 9 9 A Y E +A 21 0A 104 12,-1.9 12,-1.4 -2,-0.3 3,-0.1 -0.920 56.5 42.8-147.5 172.1 -31.1 2.9 248.4 10 10 A N E S- 0 0 128 -2,-0.3 -1,-0.1 1,-0.2 2,-0.1 0.880 74.8-179.4 56.3 35.7 -30.4 3.6 252.1 11 11 A S E - 0 0 24 9,-0.1 2,-0.3 -3,-0.1 9,-0.2 -0.385 2.6-179.8 -67.7 144.4 -26.8 4.6 251.1 12 12 A A E -A 19 0A 51 7,-2.5 7,-2.5 -3,-0.1 2,-0.4 -0.986 16.7-153.8-144.9 154.4 -24.6 5.6 254.0 13 13 A I E +A 18 0A 26 -2,-0.3 2,-0.4 5,-0.2 50,-0.3 -0.993 10.3 178.1-134.2 134.4 -21.0 6.8 254.5 14 14 A Q E > -A 17 0A 164 3,-1.8 3,-2.0 -2,-0.4 2,-0.5 -0.945 69.3 -41.8-135.8 111.9 -18.7 6.4 257.6 15 15 A G T 3 S- 0 0 36 46,-0.5 44,-0.0 -2,-0.4 0, 0.0 -0.552 123.5 -29.0 70.1-118.1 -15.2 7.7 257.3 16 16 A S T 3 S+ 0 0 20 -2,-0.5 20,-1.8 -3,-0.1 2,-0.6 0.320 114.0 105.6-111.6 4.2 -14.0 6.5 253.9 17 17 A V E < -AB 14 35A 57 -3,-2.0 -3,-1.8 18,-0.2 2,-0.5 -0.762 55.5-155.5 -92.8 123.4 -16.2 3.4 253.7 18 18 A L E -AB 13 34A 0 16,-1.7 16,-1.4 -2,-0.6 2,-0.4 -0.802 15.5-177.9 -94.2 128.4 -19.3 3.5 251.4 19 19 A T E +AB 12 33A 53 -7,-2.5 -7,-2.5 -2,-0.5 2,-0.3 -0.987 11.8 150.3-128.3 130.6 -22.1 1.1 252.4 20 20 A S E - B 0 32A 2 12,-1.6 12,-1.5 -2,-0.4 2,-0.6 -1.000 43.6-117.4-157.3 157.1 -25.3 0.6 250.5 21 21 A T E -AB 9 31A 26 -12,-1.4 -12,-1.9 -2,-0.3 2,-0.3 -0.850 37.9-175.7 -98.3 122.7 -28.1 -2.0 249.7 22 22 A a E -AB 8 30A 0 8,-3.1 8,-3.5 -2,-0.6 2,-0.3 -0.870 25.4-112.3-120.1 154.0 -28.3 -2.7 245.9 23 23 A E E - B 0 29A 83 -16,-1.8 73,-0.4 -2,-0.3 6,-0.2 -0.614 30.4-125.6 -84.8 141.6 -30.6 -4.9 243.9 24 24 A R > - 0 0 121 4,-2.7 3,-1.7 -2,-0.3 72,-0.1 -0.459 18.5-118.8 -81.1 154.8 -29.3 -8.0 242.2 25 25 A T T 3 S+ 0 0 115 1,-0.3 -1,-0.1 -2,-0.1 3,-0.1 0.896 117.7 49.7 -60.1 -40.0 -29.7 -8.6 238.5 26 26 A N T 3 S- 0 0 162 1,-0.3 -1,-0.3 69,-0.1 -2,-0.1 0.091 126.9 -97.2 -88.3 26.5 -31.8 -11.7 239.3 27 27 A G S < S+ 0 0 47 -3,-1.7 -1,-0.3 1,-0.2 2,-0.1 0.126 84.1 93.0 73.8 156.0 -34.0 -9.8 241.7 28 28 A G S S- 0 0 48 -3,-0.1 -4,-2.7 -4,-0.1 2,-0.4 -0.215 73.8 -92.2 104.5 161.6 -33.3 -9.8 245.5 29 29 A Y E -B 23 0A 141 -6,-0.2 2,-0.3 -2,-0.1 -6,-0.2 -0.895 32.1-165.3-116.6 145.9 -31.2 -7.3 247.4 30 30 A N E -B 22 0A 36 -8,-3.5 -8,-3.1 -2,-0.4 2,-0.4 -0.943 7.2-150.8-126.7 146.8 -27.5 -7.4 248.3 31 31 A T E +B 21 0A 89 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.965 27.7 152.7-119.9 130.1 -25.5 -5.3 250.8 32 32 A S E -B 20 0A 28 -12,-1.5 -12,-1.6 -2,-0.4 2,-0.3 -0.966 27.0-146.4-151.3 167.5 -21.8 -4.6 250.4 33 33 A S E -B 19 0A 67 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.985 9.5-172.5-138.5 148.9 -19.0 -2.0 251.2 34 34 A I E -B 18 0A 49 -16,-1.4 -16,-1.7 -2,-0.3 2,-0.7 -1.000 28.5-118.8-142.8 140.3 -15.9 -0.8 249.4 35 35 A D E > -B 17 0A 74 -2,-0.3 3,-0.7 -18,-0.2 -18,-0.2 -0.674 18.3-168.2 -81.4 116.5 -13.1 1.5 250.5 36 36 A L G >> S+ 0 0 3 -20,-1.8 3,-1.9 -2,-0.7 4,-1.3 0.533 72.0 91.1 -79.9 -2.9 -13.1 4.7 248.3 37 37 A N G 34 S+ 0 0 23 -21,-0.3 15,-0.9 1,-0.3 16,-0.8 0.901 79.1 58.2 -59.6 -38.5 -9.6 5.5 249.8 38 38 A S G <4 S+ 0 0 75 -3,-0.7 -1,-0.3 1,-0.2 -2,-0.1 0.427 116.3 34.2 -72.5 3.8 -7.9 3.6 246.9 39 39 A V T <4 S+ 0 0 21 -3,-1.9 11,-0.6 11,-0.2 2,-0.4 0.465 101.3 78.2-135.9 -5.1 -9.6 5.8 244.3 40 40 A I E < -C 49 0B 0 -4,-1.3 14,-1.0 -3,-0.4 12,-0.5 -0.913 51.1-178.7-114.1 133.4 -9.9 9.4 245.8 41 41 A E E -C 48 0B 46 7,-2.9 7,-3.5 -2,-0.4 2,-0.6 -0.894 26.7-125.5-122.3 155.8 -7.0 11.9 246.1 42 42 A N E -C 47 0B 27 -2,-0.3 2,-0.7 5,-0.2 5,-0.2 -0.880 23.8-168.1-102.1 117.9 -6.9 15.5 247.5 43 43 A V E > -C 46 0B 53 3,-3.8 3,-1.3 -2,-0.6 32,-0.0 -0.810 67.1 -49.3-111.6 98.3 -5.6 18.1 245.0 44 44 A D T 3 S- 0 0 84 -2,-0.7 31,-0.2 1,-0.3 -1,-0.1 0.848 128.8 -25.3 48.6 39.8 -4.8 21.4 246.6 45 45 A G T 3 S+ 0 0 9 29,-0.5 2,-0.4 1,-0.2 -1,-0.3 0.255 122.3 89.2 115.1 -16.9 -8.2 21.5 248.3 46 46 A S E < S-C 43 0B 50 -3,-1.3 -3,-3.8 37,-0.1 2,-0.4 -0.934 71.4-122.9-121.6 143.7 -10.4 19.3 246.1 47 47 A L E -C 42 0B 6 -2,-0.4 2,-0.3 -5,-0.2 -5,-0.2 -0.619 35.5-176.3 -79.6 130.0 -11.1 15.5 246.1 48 48 A K E -C 41 0B 114 -7,-3.5 -7,-2.9 -2,-0.4 2,-1.9 -0.858 39.2 -95.1-125.5 161.6 -10.3 13.9 242.7 49 49 A W E S+C 40 0B 52 -2,-0.3 -9,-0.3 -9,-0.2 -7,-0.0 -0.485 87.4 95.4 -76.4 80.9 -10.6 10.3 241.3 50 50 A Q S S- 0 0 104 -2,-1.9 -11,-0.2 -11,-0.6 -2,-0.2 -0.928 77.6-100.4-165.7 139.3 -7.1 9.0 242.1 51 51 A P + 0 0 81 0, 0.0 -13,-0.2 0, 0.0 -10,-0.2 -0.337 63.9 120.8 -64.4 144.4 -5.5 6.9 245.0 52 52 A S S S- 0 0 53 -15,-0.9 -10,-0.1 -12,-0.5 -14,-0.1 0.285 83.5 -95.1 174.4 12.4 -3.6 8.9 247.7 53 53 A N > - 0 0 84 -16,-0.8 3,-1.2 -13,-0.2 4,-0.5 0.991 50.1-178.7 58.5 59.7 -5.3 8.3 251.1 54 54 A F G > S+ 0 0 1 -14,-1.0 3,-2.1 -17,-0.4 4,-0.4 0.895 74.8 65.0 -60.1 -39.9 -7.4 11.4 250.9 55 55 A I G > S+ 0 0 55 1,-0.3 3,-0.7 2,-0.2 -1,-0.3 0.789 88.0 71.5 -57.8 -21.4 -9.0 10.8 254.3 56 56 A E G < S+ 0 0 147 -3,-1.2 -1,-0.3 1,-0.2 -2,-0.2 0.861 113.5 25.2 -63.4 -31.4 -5.5 11.3 255.8 57 57 A T G < S+ 0 0 52 -3,-2.1 17,-2.0 -4,-0.5 2,-0.3 0.169 118.6 70.0-117.6 18.4 -5.8 15.0 255.0 58 58 A b E < -D 73 0C 9 -3,-0.7 2,-0.3 -4,-0.4 15,-0.2 -0.935 55.6-177.4-134.1 155.6 -9.7 15.3 255.1 59 59 A R E +D 72 0C 119 13,-2.0 13,-1.7 -2,-0.3 -3,-0.0 -0.863 56.0 43.2-141.3 178.5 -12.3 15.1 257.9 60 60 A N E - 0 0 90 -2,-0.3 2,-0.3 1,-0.2 -1,-0.2 0.911 66.8-175.7 47.9 50.0 -16.0 15.2 258.5 61 61 A T E + 0 0 17 10,-0.1 -46,-0.5 -3,-0.1 2,-0.3 -0.583 13.3 161.4 -75.3 132.2 -16.8 12.9 255.5 62 62 A Q E -D 70 0C 123 8,-2.1 8,-1.7 -2,-0.3 2,-0.5 -0.978 43.9 -97.7-149.2 162.5 -20.6 12.6 255.1 63 63 A L E -D 69 0C 57 -2,-0.3 2,-0.4 -50,-0.3 6,-0.2 -0.706 38.3-170.0 -85.7 127.5 -23.2 11.6 252.5 64 64 A A E > -D 68 0C 30 4,-3.0 4,-1.4 -2,-0.5 3,-0.2 -0.962 51.6 -28.9-119.8 130.0 -24.8 14.7 250.7 65 65 A G T 4 S- 0 0 68 -2,-0.4 -2,-0.0 1,-0.2 0, 0.0 -0.320 105.9 -48.8 66.3-150.4 -27.8 14.4 248.4 66 66 A S T 4 S+ 0 0 97 1,-0.0 -1,-0.2 3,-0.0 -55,-0.1 0.838 133.6 1.1 -89.9 -39.2 -28.4 11.1 246.6 67 67 A S T 4 S+ 0 0 14 -3,-0.2 20,-2.1 -4,-0.0 21,-0.4 0.287 102.5 105.8-133.6 9.1 -24.9 10.5 245.1 68 68 A E E < -DE 64 86C 85 -4,-1.4 -4,-3.0 18,-0.2 2,-0.6 -0.779 51.6-152.5 -99.2 140.1 -22.7 13.4 246.3 69 69 A L E -DE 63 85C 2 16,-2.0 16,-1.4 -2,-0.4 2,-0.4 -0.920 12.2-163.8-109.4 120.1 -20.0 13.1 249.0 70 70 A A E +DE 62 84C 34 -8,-1.7 -8,-2.1 -2,-0.6 2,-0.3 -0.842 21.0 148.2-105.7 140.5 -19.2 16.3 251.0 71 71 A A E - E 0 83C 4 12,-2.4 12,-2.8 -2,-0.4 2,-0.4 -0.955 43.1-113.1-155.9 174.9 -16.1 16.7 253.1 72 72 A E E -DE 59 82C 61 -13,-1.7 -13,-2.0 -2,-0.3 2,-0.3 -0.962 35.0-174.3-118.1 132.5 -13.5 19.3 254.3 73 73 A b E -DE 58 81C 0 8,-1.7 8,-1.7 -2,-0.4 2,-0.3 -0.962 27.5-107.7-132.6 148.2 -9.9 19.0 253.0 74 74 A K E - E 0 80C 70 -17,-2.0 -29,-0.5 -2,-0.3 6,-0.2 -0.522 30.3-150.4 -73.4 133.3 -6.7 20.8 253.7 75 75 A T > - 0 0 30 4,-1.9 3,-2.5 -2,-0.3 4,-0.2 -0.407 39.8 -91.2 -91.7 173.2 -5.4 23.1 251.0 76 76 A R T 3 S+ 0 0 187 1,-0.3 -1,-0.1 2,-0.1 -2,-0.1 0.794 128.5 63.6 -58.6 -22.5 -1.7 23.8 250.5 77 77 A A T 3 S- 0 0 72 2,-0.1 -1,-0.3 -33,-0.1 3,-0.1 0.379 118.1-112.8 -83.8 10.1 -2.2 26.8 252.9 78 78 A Q S < S+ 0 0 130 -3,-2.5 2,-0.4 1,-0.2 -2,-0.1 0.853 75.6 130.5 65.1 35.4 -3.1 24.3 255.7 79 79 A Q - 0 0 133 -4,-0.2 -4,-1.9 -6,-0.1 2,-0.5 -0.940 58.8-126.1-120.1 141.4 -6.7 25.5 255.9 80 80 A F E +E 74 0C 75 -2,-0.4 2,-0.3 -6,-0.2 -6,-0.2 -0.735 35.9 174.2 -87.2 124.4 -9.9 23.3 255.8 81 81 A V E -E 73 0C 59 -8,-1.7 -8,-1.7 -2,-0.5 2,-0.3 -0.851 39.6 -88.4-125.7 161.6 -12.3 24.3 252.9 82 82 A S E +E 72 0C 110 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.523 51.5 171.8 -72.2 130.1 -15.6 22.7 251.7 83 83 A T E +E 71 0C 8 -12,-2.8 -12,-2.4 -2,-0.3 2,-0.3 -0.940 7.4 179.3-135.3 157.5 -15.0 20.1 248.9 84 84 A K E -E 70 0C 139 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.991 8.9-165.1-155.8 160.2 -17.2 17.6 247.1 85 85 A I E -E 69 0C 18 -16,-1.4 -16,-2.0 -2,-0.3 2,-0.8 -0.997 28.6-113.8-148.8 148.1 -17.2 14.9 244.4 86 86 A N E > -E 68 0C 56 -2,-0.3 3,-1.4 -18,-0.2 4,-0.3 -0.743 18.4-165.4 -87.7 112.8 -19.8 13.1 242.4 87 87 A L G >> S+ 0 0 0 -20,-2.1 4,-1.8 -2,-0.8 3,-0.8 0.746 83.4 73.6 -67.6 -21.5 -19.8 9.3 243.3 88 88 A D G 34 S+ 0 0 31 -21,-0.4 -1,-0.3 1,-0.2 -20,-0.1 0.667 77.1 79.6 -68.2 -13.7 -21.9 8.6 240.2 89 89 A D G <4 S- 0 0 69 -3,-1.4 -1,-0.2 -87,-0.2 -2,-0.1 0.878 121.4 -9.7 -62.8 -39.9 -18.9 9.2 238.0 90 90 A H T <4 S+ 0 0 47 -3,-0.8 11,-1.6 -4,-0.3 2,-0.9 0.477 105.4 101.0-138.7 -9.9 -17.3 5.7 238.5 91 91 A I E < +F 100 0D 0 -4,-1.8 -87,-1.6 9,-0.2 -88,-0.4 -0.700 50.5 167.1 -84.7 110.3 -19.2 3.9 241.4 92 92 A A E -F 99 0D 5 7,-1.3 7,-1.7 -2,-0.9 2,-0.6 -0.756 37.3-121.8-118.8 168.6 -21.6 1.4 239.7 93 93 A N E -F 98 0D 27 -91,-0.3 2,-0.7 -2,-0.2 5,-0.2 -0.920 27.2-178.0-111.4 111.1 -23.7 -1.5 240.8 94 94 A I E > S-F 97 0D 83 3,-2.9 3,-1.0 -2,-0.6 -70,-0.1 -0.893 75.4 -24.2-113.5 107.0 -22.8 -4.8 239.0 95 95 A D T 3 S- 0 0 90 -2,-0.7 -1,-0.2 1,-0.2 -71,-0.2 0.830 125.1 -51.2 65.7 33.2 -25.0 -7.7 240.1 96 96 A G T 3 S+ 0 0 0 -73,-0.4 2,-0.4 1,-0.3 -74,-0.4 0.511 121.3 104.1 84.6 1.2 -25.9 -6.1 243.5 97 97 A T E < S-F 94 0D 49 -3,-1.0 -3,-2.9 -74,-0.1 2,-0.3 -0.941 71.1-126.0-118.7 137.4 -22.1 -5.5 244.2 98 98 A L E +F 93 0D 7 -2,-0.4 2,-0.3 -5,-0.2 -5,-0.2 -0.620 33.8 169.9 -82.3 138.7 -20.4 -2.1 244.0 99 99 A K E -F 92 0D 119 -7,-1.7 -7,-1.3 -2,-0.3 2,-0.1 -0.968 33.4-121.5-149.4 130.3 -17.3 -2.0 241.8 100 100 A Y E F 91 0D 95 -2,-0.3 -9,-0.2 -9,-0.2 -10,-0.0 -0.465 360.0 360.0 -70.0 139.8 -15.2 1.1 240.6 101 101 A E 0 0 101 -11,-1.6 -1,-0.2 -2,-0.1 -10,-0.1 0.502 360.0 360.0-145.8 360.0 -15.1 1.3 236.8