==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 30-APR-01 1IJW . COMPND 2 MOLECULE: 5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*AP*TP*AP*AP*GP*A)- . SOURCE 2 SYNTHETIC: YES; . AUTHOR T.K.CHIU,C.SOHN,R.C.JOHNSON,R.E.DICKERSON . 47 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3403.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 29 61.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 10.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 21 44.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 139 C G 0 0 132 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 174.0 7.1 15.4 12.3 2 140 C R - 0 0 234 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.730 360.0-114.8 -92.4 135.6 9.8 14.5 9.8 3 141 C P - 0 0 110 0, 0.0 -1,-0.1 0, 0.0 2,-0.0 -0.260 32.8-102.8 -65.4 152.0 10.3 10.8 8.9 4 142 C R - 0 0 183 1,-0.1 3,-0.1 2,-0.0 0, 0.0 -0.313 20.2-128.5 -70.2 158.1 13.5 9.0 9.8 5 143 C A S S+ 0 0 50 1,-0.2 2,-0.4 29,-0.0 -1,-0.1 0.868 93.5 29.1 -75.3 -37.7 16.1 8.4 7.2 6 144 C I S S- 0 0 2 3,-0.0 -1,-0.2 4,-0.0 -2,-0.0 -0.978 77.9-133.4-128.0 136.9 16.3 4.7 8.0 7 145 C N > - 0 0 92 -2,-0.4 4,-2.1 -3,-0.1 5,-0.1 -0.267 39.6 -95.4 -78.4 173.1 13.7 2.3 9.3 8 146 C K H > S+ 0 0 76 1,-0.2 4,-1.6 2,-0.2 5,-0.1 0.820 126.4 55.4 -59.6 -30.5 14.4 -0.1 12.1 9 147 C H H >> S+ 0 0 50 2,-0.2 4,-2.0 1,-0.2 3,-0.6 0.980 108.3 46.2 -63.4 -57.5 15.1 -2.8 9.5 10 148 C E H 3> S+ 0 0 54 1,-0.3 4,-3.3 2,-0.2 5,-0.3 0.802 107.9 59.9 -55.8 -32.3 17.8 -0.7 7.8 11 149 C Q H 3X S+ 0 0 56 -4,-2.1 4,-2.8 2,-0.2 -1,-0.3 0.920 104.7 46.4 -65.2 -43.6 19.2 0.1 11.2 12 150 C E H S+ 0 0 41 -4,-3.1 5,-2.4 1,-0.3 4,-0.3 0.903 109.9 52.6 -48.9 -45.0 27.5 -3.5 7.7 18 156 C L H ><5S+ 0 0 13 -4,-3.3 3,-1.1 -5,-0.3 -1,-0.3 0.888 109.4 47.5 -60.8 -40.1 29.3 -1.0 10.0 19 157 C E H 3<5S+ 0 0 124 -4,-1.7 -1,-0.2 -3,-0.4 -2,-0.2 0.802 106.8 58.5 -70.9 -29.0 30.6 -3.7 12.3 20 158 C K T 3<5S- 0 0 78 -4,-2.4 -1,-0.3 -5,-0.1 -2,-0.2 0.501 129.1 -98.6 -77.4 -2.6 31.7 -5.6 9.2 21 159 C G T < 5 + 0 0 61 -3,-1.1 -3,-0.2 -4,-0.3 -2,-0.1 0.634 64.6 159.3 99.8 13.7 33.8 -2.6 8.3 22 160 C H < - 0 0 84 -5,-2.4 -1,-0.2 -6,-0.2 2,-0.1 -0.593 45.6-112.7 -76.9 128.1 31.8 -0.6 5.8 23 161 C P >> - 0 0 79 0, 0.0 4,-2.3 0, 0.0 3,-0.8 -0.350 16.0-134.5 -60.0 123.5 32.8 3.1 5.5 24 162 C R H 3> S+ 0 0 38 1,-0.3 4,-2.6 2,-0.2 5,-0.1 0.799 105.5 58.9 -51.2 -31.7 30.1 5.4 6.7 25 163 C Q H 3> S+ 0 0 144 2,-0.2 4,-2.4 1,-0.2 -1,-0.3 0.940 107.3 46.0 -65.3 -43.8 30.6 7.6 3.6 26 164 C Q H <> S+ 0 0 32 -3,-0.8 4,-2.6 1,-0.2 5,-0.2 0.946 113.9 47.6 -62.3 -47.5 29.8 4.6 1.4 27 165 C L H X S+ 0 0 2 -4,-2.3 4,-2.7 2,-0.2 -1,-0.2 0.880 110.3 53.9 -61.9 -37.6 26.8 3.6 3.4 28 166 C A H X>S+ 0 0 5 -4,-2.6 5,-1.8 -5,-0.3 4,-1.2 0.988 111.1 44.5 -57.6 -61.0 25.6 7.2 3.4 29 167 C I H <5S+ 0 0 132 -4,-2.4 3,-0.5 1,-0.2 -2,-0.2 0.896 115.4 47.3 -48.3 -53.3 25.7 7.5 -0.4 30 168 C I H <5S+ 0 0 124 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.950 117.3 40.6 -59.3 -52.2 24.1 4.1 -0.9 31 169 C F H <5S- 0 0 52 -4,-2.7 -1,-0.2 -5,-0.2 -2,-0.2 0.582 110.4-125.1 -75.9 -3.9 21.2 4.7 1.5 32 170 C G T <5S+ 0 0 63 -4,-1.2 2,-0.3 -3,-0.5 -3,-0.2 0.958 70.5 109.8 61.3 53.8 21.0 8.2 0.3 33 171 C I < - 0 0 31 -5,-1.8 2,-0.3 -6,-0.1 -1,-0.2 -0.862 69.8 -76.7-144.4 178.8 21.4 9.9 3.7 34 172 C G >> - 0 0 31 -2,-0.3 4,-1.7 1,-0.1 3,-0.9 -0.643 20.5-133.8 -95.2 144.7 23.9 11.9 5.5 35 173 C V H 3> S+ 0 0 49 -2,-0.3 4,-2.4 1,-0.3 5,-0.2 0.881 109.4 57.0 -53.2 -41.2 27.1 10.8 7.2 36 174 C S H 3> S+ 0 0 90 1,-0.2 4,-1.2 2,-0.2 -1,-0.3 0.871 103.4 54.5 -60.3 -34.5 26.3 12.9 10.2 37 175 C T H <> S+ 0 0 23 -3,-0.9 4,-2.8 2,-0.2 3,-0.3 0.916 107.1 50.2 -63.8 -44.5 23.0 11.0 10.5 38 176 C L H X S+ 0 0 0 -4,-1.7 4,-4.0 1,-0.2 -2,-0.2 0.953 107.4 52.5 -61.1 -49.2 24.9 7.7 10.6 39 177 C Y H < S+ 0 0 122 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.803 112.0 49.2 -57.3 -25.9 27.3 9.0 13.3 40 178 C R H < S+ 0 0 163 -4,-1.2 -2,-0.2 -3,-0.3 -1,-0.2 0.927 115.2 40.3 -79.0 -47.3 24.1 9.9 15.3 41 179 C Y H < S+ 0 0 40 -4,-2.8 -2,-0.2 1,-0.3 -3,-0.2 0.896 133.6 24.6 -66.3 -37.8 22.4 6.5 14.9 42 180 C F S < S- 0 0 18 -4,-4.0 -1,-0.3 -5,-0.3 4,-0.1 -0.750 79.9-154.2-133.8 88.4 25.7 4.7 15.4 43 181 C P - 0 0 51 0, 0.0 3,-0.1 0, 0.0 -3,-0.1 -0.244 25.0-124.6 -55.6 144.6 28.4 6.5 17.4 44 182 C A S > S+ 0 0 65 1,-0.3 2,-3.5 2,-0.1 3,-1.6 0.961 111.9 69.8 -55.6 -46.9 31.9 5.4 16.5 45 183 C S T 3 S+ 0 0 116 1,-0.3 -1,-0.3 2,-0.1 0, 0.0 -0.321 96.2 53.9 -67.1 61.6 32.1 4.8 20.3 46 184 C S T 3 0 0 73 -2,-3.5 -1,-0.3 -4,-0.1 -2,-0.1 0.270 360.0 360.0-176.9 12.5 29.7 1.9 19.9 47 185 C I < 0 0 95 -3,-1.6 -2,-0.1 -5,-0.1 -3,-0.1 0.793 360.0 360.0-116.7 360.0 31.1 -0.5 17.3