==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 09-MAY-01 1ILY . COMPND 2 MOLECULE: RIBOSOMAL PROTEIN L18; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; . AUTHOR E.A.WOESTENENK,G.M.GONGADZE,D.V.SHCHERBAKOV,A.V.RAK, . 90 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5452.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 67 74.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 5.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 16.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 15.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 26 28.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 22 A R 0 0 177 0, 0.0 63,-0.2 0, 0.0 62,-0.1 0.000 360.0 360.0 360.0 27.9 -6.8 12.4 -6.3 2 23 A L - 0 0 11 60,-0.3 62,-2.1 17,-0.2 2,-0.5 -0.128 360.0-135.2 -43.4 124.0 -6.3 8.7 -6.3 3 24 A R E -Ab 18 64A 87 15,-1.0 15,-2.6 60,-0.3 2,-0.3 -0.785 12.5-146.4 -92.8 125.5 -7.1 7.5 -2.8 4 25 A L E -Ab 17 65A 0 60,-0.6 62,-1.6 -2,-0.5 2,-0.3 -0.655 15.6-176.4 -89.5 144.0 -4.8 5.0 -1.2 5 26 A S E -A 16 0A 27 11,-1.7 11,-3.6 -2,-0.3 2,-0.6 -0.872 7.2-163.9-145.8 108.5 -6.1 2.3 1.2 6 27 A V E -A 15 0A 3 -2,-0.3 2,-0.3 9,-0.3 9,-0.3 -0.824 9.4-163.7 -98.3 123.4 -3.9 -0.1 3.1 7 28 A F E +A 14 0A 134 7,-1.9 7,-2.9 -2,-0.6 2,-0.3 -0.819 11.1 175.8-107.0 145.3 -5.5 -3.1 4.6 8 29 A R E +A 13 0A 45 -2,-0.3 5,-0.2 5,-0.2 -2,-0.0 -0.924 9.7 171.4-150.3 119.2 -4.0 -5.5 7.2 9 30 A S - 0 0 87 3,-1.4 -1,-0.1 -2,-0.3 4,-0.1 0.925 69.7 -63.8 -89.7 -69.4 -5.8 -8.4 8.9 10 31 A L S S+ 0 0 141 2,-0.1 30,-0.1 30,-0.0 3,-0.0 0.332 123.1 2.9-147.6 -59.2 -3.2 -10.2 10.9 11 32 A K S S+ 0 0 139 29,-0.0 2,-0.6 28,-0.0 21,-0.1 0.273 112.0 91.7-119.4 4.4 -0.5 -11.7 8.7 12 33 A H - 0 0 93 19,-0.1 -3,-1.4 20,-0.1 2,-0.5 -0.909 55.1-168.3-109.1 116.3 -1.9 -10.3 5.4 13 34 A I E +A 8 0A 2 -2,-0.6 18,-0.6 -5,-0.2 2,-0.3 -0.874 15.1 167.6-104.1 129.1 -0.6 -6.9 4.3 14 35 A Y E -AC 7 30A 73 -7,-2.9 -7,-1.9 -2,-0.5 2,-0.4 -0.993 21.5-164.4-143.2 151.2 -2.4 -5.2 1.4 15 36 A A E -AC 6 29A 0 14,-2.1 14,-1.8 -2,-0.3 2,-0.6 -0.983 6.3-164.5-137.6 122.5 -2.5 -1.8 -0.3 16 37 A Q E -AC 5 28A 70 -11,-3.6 -11,-1.7 -2,-0.4 2,-0.9 -0.922 3.5-162.2-112.6 113.3 -5.3 -0.7 -2.6 17 38 A I E +AC 4 27A 0 10,-3.3 9,-1.9 -2,-0.6 10,-1.8 -0.815 23.0 178.3 -97.0 100.4 -4.6 2.3 -4.8 18 39 A I E -AC 3 25A 27 -15,-2.6 -15,-1.0 -2,-0.9 2,-0.7 -0.621 34.7-108.2-102.0 163.2 -8.0 3.5 -6.0 19 40 A D E > - C 0 24A 31 5,-2.7 5,-1.4 -17,-0.3 -17,-0.2 -0.824 23.1-166.8 -93.6 114.0 -9.2 6.4 -8.1 20 41 A D T 5S+ 0 0 77 -2,-0.7 3,-0.2 1,-0.2 -1,-0.1 0.034 83.3 62.1 -90.3 26.6 -10.9 9.0 -5.8 21 42 A E T 5S+ 0 0 126 1,-0.5 2,-0.4 3,-0.1 -1,-0.2 0.711 124.4 8.5-110.7 -47.6 -12.4 10.8 -8.8 22 43 A K T 5S- 0 0 153 2,-0.1 2,-0.7 0, 0.0 -1,-0.5 -0.993 99.5-100.6-134.3 118.2 -14.4 8.0 -10.1 23 44 A G T 5 + 0 0 83 -2,-0.4 2,-0.4 -3,-0.2 -3,-0.2 -0.148 69.7 147.9 -43.8 89.3 -14.6 5.0 -7.8 24 45 A V E < -C 19 0A 68 -5,-1.4 -5,-2.7 -2,-0.7 2,-0.5 -0.900 42.6-148.0-138.3 112.4 -12.0 3.0 -9.6 25 46 A T E +C 18 0A 86 -2,-0.4 -7,-0.2 -7,-0.3 3,-0.1 -0.625 27.8 163.7 -76.9 119.4 -9.5 0.5 -8.2 26 47 A L E + 0 0 58 -9,-1.9 2,-0.4 -2,-0.5 -8,-0.2 0.855 57.2 19.9-102.3 -57.6 -6.4 0.6 -10.3 27 48 A V E +C 17 0A 13 -10,-1.8 -10,-3.3 2,-0.0 -1,-0.3 -0.930 54.1 175.4-122.7 146.1 -3.5 -1.0 -8.4 28 49 A S E +C 16 0A 56 -2,-0.4 2,-0.3 -12,-0.2 -12,-0.2 -0.906 7.5 178.9-150.2 114.9 -3.4 -3.4 -5.5 29 50 A A E +C 15 0A 1 -14,-1.8 -14,-2.1 -2,-0.3 2,-0.3 -0.905 2.5 177.8-121.0 148.4 -0.2 -5.0 -4.1 30 51 A S E > -C 14 0A 6 -2,-0.3 4,-2.2 -16,-0.2 5,-0.2 -0.986 28.6-142.3-150.4 136.8 0.3 -7.4 -1.2 31 52 A S H > S+ 0 0 4 -18,-0.6 4,-1.5 -2,-0.3 5,-0.3 0.973 109.0 42.3 -60.4 -57.5 3.4 -9.1 0.3 32 53 A L H 4 S+ 0 0 47 -19,-0.3 -1,-0.2 1,-0.2 -18,-0.1 0.656 113.6 60.4 -64.1 -15.4 1.6 -12.4 1.1 33 54 A A H 4 S+ 0 0 48 -20,-0.3 -2,-0.2 1,-0.1 -1,-0.2 0.973 103.1 42.2 -76.6 -62.0 -0.0 -12.1 -2.3 34 55 A L H < S- 0 0 87 -4,-2.2 -2,-0.2 2,-0.1 -3,-0.1 0.933 130.4 -81.0 -52.4 -52.1 2.9 -12.0 -4.8 35 56 A K S < S+ 0 0 157 -4,-1.5 2,-0.1 1,-0.3 -3,-0.1 0.066 92.9 117.3 177.1 -44.2 4.7 -14.8 -3.0 36 57 A L + 0 0 73 -5,-0.3 -1,-0.3 1,-0.2 -2,-0.1 -0.276 26.4 166.5 -51.9 115.6 6.5 -13.4 0.0 37 58 A K + 0 0 163 -2,-0.1 -1,-0.2 -3,-0.1 -5,-0.1 0.015 45.0 95.5-121.5 24.7 5.0 -15.1 3.1 38 59 A G S S- 0 0 52 1,-0.2 -6,-0.0 -7,-0.1 -7,-0.0 0.686 85.2 -10.8 -82.0-116.6 7.7 -14.1 5.6 39 60 A N - 0 0 81 1,-0.1 -1,-0.2 -8,-0.0 4,-0.1 -0.145 52.0-140.0 -77.8 178.0 7.3 -11.0 7.8 40 61 A K S S+ 0 0 65 3,-0.1 4,-0.4 -3,-0.1 -9,-0.1 0.741 99.9 29.4-108.4 -38.8 4.7 -8.3 7.5 41 62 A T S > S+ 0 0 43 2,-0.2 4,-0.7 3,-0.1 -2,-0.0 0.738 112.3 65.8 -93.1 -28.1 6.8 -5.1 8.2 42 63 A E T 4 S+ 0 0 139 1,-0.2 4,-0.4 2,-0.2 3,-0.4 0.959 119.2 22.3 -58.2 -54.1 10.1 -6.5 6.9 43 64 A V T > S+ 0 0 20 1,-0.2 4,-2.6 2,-0.2 5,-0.4 0.687 96.3 101.6 -86.1 -21.5 8.9 -6.7 3.3 44 65 A A H > S+ 0 0 0 -4,-0.4 4,-1.7 1,-0.2 -1,-0.2 0.797 86.5 47.1 -30.6 -44.0 6.1 -4.1 3.9 45 66 A R H >X S+ 0 0 84 -4,-0.7 4,-2.9 -3,-0.4 3,-1.3 0.994 109.3 49.5 -64.1 -60.9 8.5 -1.7 2.2 46 67 A Q H 3> S+ 0 0 88 -4,-0.4 4,-1.6 1,-0.3 -1,-0.2 0.779 112.2 53.1 -48.4 -25.3 9.3 -4.0 -0.7 47 68 A V H 3X S+ 0 0 4 -4,-2.6 4,-1.7 2,-0.2 -1,-0.3 0.842 109.3 46.2 -80.1 -33.2 5.5 -4.3 -0.8 48 69 A G H X S+ 0 0 90 -4,-1.4 3,-1.7 -3,-0.3 4,-0.6 0.988 115.7 43.1 -72.8 -69.3 2.5 -0.6 -9.7 55 76 A A H >X>S+ 0 0 0 -4,-3.1 5,-1.9 1,-0.3 3,-1.9 0.864 110.8 59.5 -44.7 -42.5 0.4 2.5 -9.1 56 77 A L H ><5S+ 0 0 65 -4,-1.4 3,-0.5 -5,-0.4 -1,-0.3 0.871 90.7 68.3 -55.8 -39.1 3.2 4.5 -10.7 57 78 A A H <<5S+ 0 0 89 -3,-1.7 -1,-0.3 -4,-0.8 -2,-0.2 0.764 104.7 43.9 -53.8 -24.0 2.6 2.5 -13.8 58 79 A L H <<5S- 0 0 77 -3,-1.9 -1,-0.3 -4,-0.6 -2,-0.2 0.727 126.0-105.8 -89.5 -27.8 -0.7 4.3 -14.1 59 80 A G T <<5 + 0 0 51 -4,-1.1 2,-0.8 -3,-0.5 -3,-0.2 0.530 60.0 163.1 110.3 14.9 1.0 7.6 -13.2 60 81 A I < + 0 0 20 -5,-1.9 -1,-0.2 1,-0.2 3,-0.1 -0.548 2.1 158.8 -70.9 107.2 -0.3 7.8 -9.6 61 82 A K + 0 0 132 -2,-0.8 28,-1.6 1,-0.3 2,-0.4 0.872 62.7 28.9 -94.5 -52.4 2.0 10.4 -8.0 62 83 A Q B S-d 89 0B 115 26,-0.3 2,-0.3 28,-0.0 -1,-0.3 -0.897 70.5-166.8-114.8 142.6 -0.0 11.6 -5.0 63 84 A V - 0 0 14 26,-1.6 2,-0.8 -2,-0.4 -60,-0.3 -0.883 25.1-120.5-128.0 161.5 -2.6 9.6 -3.1 64 85 A A E -b 3 0A 31 -62,-2.1 2,-0.9 -2,-0.3 -60,-0.6 -0.854 26.8-153.9-102.0 100.9 -5.4 10.2 -0.6 65 86 A F E +b 4 0A 40 -2,-0.8 -60,-0.2 -62,-0.2 3,-0.1 -0.666 38.5 142.0 -81.1 106.2 -4.6 8.2 2.5 66 87 A D + 0 0 109 -62,-1.6 -1,-0.1 -2,-0.9 -61,-0.1 -0.226 6.4 157.3-137.2 43.2 -7.8 7.4 4.3 67 88 A R - 0 0 67 1,-0.2 -1,-0.1 3,-0.1 4,-0.1 0.794 38.4-153.7 -37.7 -39.2 -7.3 3.9 5.5 68 89 A G S S+ 0 0 54 2,-0.2 2,-1.7 1,-0.1 -1,-0.2 -0.862 70.9 24.8 100.7-117.3 -10.0 4.6 8.1 69 90 A P S S+ 0 0 127 0, 0.0 2,-0.5 0, 0.0 -1,-0.1 -0.242 94.2 118.3 -80.1 50.6 -9.7 2.5 11.3 70 91 A Y - 0 0 43 -2,-1.7 -2,-0.2 -63,-0.0 2,-0.2 -0.894 53.8-151.6-123.2 102.2 -6.0 2.0 10.8 71 92 A K - 0 0 180 -2,-0.5 2,-1.2 1,-0.1 5,-0.2 -0.466 41.7 -90.2 -71.5 139.3 -3.7 3.4 13.5 72 93 A Y S S+ 0 0 136 -2,-0.2 -1,-0.1 4,-0.1 2,-0.1 -0.269 73.1 157.0 -52.1 88.7 -0.2 4.4 12.3 73 94 A H > - 0 0 124 -2,-1.2 4,-0.8 1,-0.0 -1,-0.0 -0.217 56.1 -85.1-103.7-165.1 1.4 1.0 12.9 74 95 A G H > S+ 0 0 20 2,-0.2 4,-1.9 3,-0.1 5,-0.4 0.968 119.9 50.1 -69.8 -55.8 4.4 -0.9 11.6 75 96 A R H > S+ 0 0 48 1,-0.3 4,-3.2 2,-0.2 5,-0.5 0.955 111.6 46.4 -45.8 -71.2 2.9 -2.4 8.4 76 97 A V H > S+ 0 0 5 -5,-0.2 4,-1.8 3,-0.2 -1,-0.3 0.784 115.2 54.6 -42.6 -32.3 1.3 0.8 7.1 77 98 A K H >X S+ 0 0 67 -4,-0.8 4,-2.6 -3,-0.4 3,-0.5 0.993 113.3 32.5 -66.4 -80.2 4.7 2.3 7.9 78 99 A A H 3X S+ 0 0 11 -4,-1.9 4,-1.9 1,-0.3 -30,-0.3 0.835 124.6 50.4 -47.3 -35.9 7.2 0.2 6.0 79 100 A L H 3X S+ 0 0 0 -4,-3.2 4,-2.6 -5,-0.4 -1,-0.3 0.894 108.2 51.5 -70.2 -41.2 4.5 -0.3 3.4 80 101 A A H S+ 0 0 0 -4,-2.6 5,-2.1 1,-0.2 4,-1.3 0.810 124.2 38.3 -61.3 -33.0 4.5 3.3 -1.7 84 105 A R H <5S+ 0 0 134 -4,-2.5 -2,-0.2 3,-0.2 -1,-0.2 0.744 118.8 48.1 -90.0 -26.2 6.0 6.7 -1.0 85 106 A E H <5S+ 0 0 96 -4,-5.3 -2,-0.2 -5,-0.2 -3,-0.2 0.816 112.8 49.9 -80.8 -33.3 9.6 5.6 -1.8 86 107 A G H <5S- 0 0 24 -4,-3.6 -2,-0.2 -5,-0.4 -3,-0.2 0.929 135.3 -72.5 -71.9 -46.7 8.4 3.9 -5.0 87 108 A G T <5S+ 0 0 14 -4,-1.3 -3,-0.2 1,-0.3 2,-0.1 0.274 93.2 110.0 177.9 -31.4 6.4 6.9 -6.3 88 109 A L < - 0 0 0 -5,-2.1 2,-0.5 -6,-0.2 -1,-0.3 -0.403 43.6-160.8 -71.4 144.0 3.1 7.6 -4.4 89 110 A E B d 62 0B 51 -28,-1.6 -26,-1.6 -2,-0.1 -5,-0.1 -0.865 360.0 360.0-127.9 95.2 2.8 10.6 -2.2 90 111 A F 0 0 70 -2,-0.5 -26,-0.1 -28,-0.3 -6,-0.1 -0.926 360.0 360.0-124.2 360.0 -0.0 10.3 0.3