==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 01-AUG-01 1IQT . COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.KATAHIRA,Y.MIYANOIRI,Y.ENOKIZONO,G.MATSUDA,T.NAGATA, . 75 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5674.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 40 53.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 17.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 16.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 183 A K 0 0 64 0, 0.0 74,-4.7 0, 0.0 46,-0.3 0.000 360.0 360.0 360.0 159.3 -0.8 7.2 -5.9 2 184 A I E -AB 46 74A 0 44,-2.9 44,-1.9 72,-0.4 2,-0.4 -0.843 360.0-135.5-131.4 171.1 -1.9 3.7 -4.8 3 185 A F E -AB 45 73A 26 70,-0.8 70,-2.0 -2,-0.3 2,-0.3 -0.985 13.4-161.6-131.5 134.6 -0.5 0.1 -4.8 4 186 A V E -AB 44 72A 6 40,-2.8 40,-2.2 -2,-0.4 3,-0.4 -0.818 20.0-146.5-111.1 154.2 -2.2 -3.1 -5.8 5 187 A G S S+ 0 0 14 66,-1.1 67,-0.1 -2,-0.3 64,-0.1 -0.046 73.4 107.5-105.4 32.8 -1.2 -6.7 -5.0 6 188 A G + 0 0 10 65,-0.3 -1,-0.2 38,-0.2 37,-0.1 0.866 41.9 170.1 -76.3 -35.7 -2.6 -7.8 -8.3 7 189 A L + 0 0 85 -3,-0.4 -1,-0.1 1,-0.1 -2,-0.1 0.763 21.7 170.1 26.7 40.1 0.9 -8.4 -9.7 8 190 A S - 0 0 38 1,-0.1 3,-0.3 2,-0.0 -1,-0.1 -0.215 53.9 -94.9 -70.9 168.6 -0.7 -10.1 -12.6 9 191 A P S S+ 0 0 141 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.808 116.9 15.2 -55.8 -29.0 1.2 -11.1 -15.7 10 192 A D S S- 0 0 111 21,-0.0 -2,-0.0 3,-0.0 21,-0.0 -0.815 83.0-126.4-150.6 107.0 0.2 -7.7 -17.2 11 193 A T - 0 0 16 -3,-0.3 2,-4.2 -2,-0.3 3,-0.2 -0.343 26.8-130.6 -54.8 111.0 -1.3 -4.8 -15.2 12 194 A P > + 0 0 45 0, 0.0 4,-4.0 0, 0.0 3,-0.5 -0.188 40.3 169.8 -61.9 58.2 -4.6 -4.1 -17.1 13 195 A E H > S+ 0 0 80 -2,-4.2 4,-3.6 2,-0.3 5,-0.4 0.904 74.9 48.2 -37.3 -66.8 -3.7 -0.4 -17.3 14 196 A E H > S+ 0 0 125 1,-0.3 4,-1.5 -3,-0.2 -1,-0.3 0.922 120.1 39.7 -47.1 -41.5 -6.5 0.5 -19.7 15 197 A K H > S+ 0 0 118 -3,-0.5 4,-1.5 2,-0.2 -1,-0.3 0.827 113.3 57.7 -75.9 -27.9 -8.8 -1.5 -17.4 16 198 A I H >X>S+ 0 0 10 -4,-4.0 4,-1.5 2,-0.2 5,-0.9 0.980 104.7 48.4 -64.9 -53.6 -6.9 -0.0 -14.5 17 199 A R H 3<>S+ 0 0 156 -4,-3.6 5,-0.7 1,-0.3 -1,-0.2 0.911 104.8 62.6 -54.0 -39.5 -7.8 3.5 -15.6 18 200 A E H 3<5S+ 0 0 139 -4,-1.5 -1,-0.3 -5,-0.4 -2,-0.2 0.919 121.0 21.1 -55.2 -41.1 -11.4 2.3 -15.9 19 201 A Y H X5S+ 0 0 0 -4,-1.5 4,-1.6 1,-0.3 3,-1.0 0.978 123.5 50.6 -53.4 -56.8 -8.7 3.7 -10.6 21 203 A G H 34 S+ 0 0 140 0, 0.0 4,-1.6 0, 0.0 -1,-0.1 0.071 85.1 93.8 161.2 -27.3 -4.8 13.2 -3.6 52 234 A E H > S+ 0 0 121 1,-0.2 4,-1.5 2,-0.2 3,-0.2 0.935 81.9 54.9 -55.8 -53.2 -8.5 12.9 -2.8 53 235 A P H > S+ 0 0 17 0, 0.0 4,-2.9 0, 0.0 3,-0.4 0.918 102.7 57.2 -53.2 -43.4 -9.2 9.7 -4.8 54 236 A V H > S+ 0 0 25 1,-0.3 4,-2.3 2,-0.2 5,-0.6 0.962 100.9 58.1 -52.8 -46.3 -6.3 7.9 -2.9 55 237 A K H X S+ 0 0 151 -4,-1.6 4,-1.0 -3,-0.2 -1,-0.3 0.927 113.8 39.2 -47.6 -44.1 -8.3 8.8 0.3 56 238 A K H >< S+ 0 0 127 -4,-1.5 3,-0.7 -3,-0.4 4,-0.5 0.993 117.6 45.2 -70.8 -64.2 -11.1 6.8 -1.3 57 239 A I H >< S+ 0 0 0 -4,-2.9 3,-4.2 1,-0.3 -3,-0.2 0.955 113.5 50.2 -44.4 -64.2 -9.2 4.0 -2.8 58 240 A M H >< S+ 0 0 72 -4,-2.3 3,-1.2 1,-0.3 -1,-0.3 0.863 101.0 66.0 -44.7 -35.6 -7.1 3.5 0.3 59 241 A E T << S+ 0 0 149 -4,-1.0 -1,-0.3 -3,-0.7 -2,-0.2 0.620 108.3 40.0 -65.5 -6.7 -10.5 3.5 2.2 60 242 A K T < S+ 0 0 134 -3,-4.2 -1,-0.3 -4,-0.5 -2,-0.2 -0.293 70.4 175.7-136.3 51.0 -11.2 0.2 0.3 61 243 A K S < S+ 0 0 132 -3,-1.2 11,-1.7 1,-0.2 2,-0.6 0.717 78.9 50.6 -29.2 -31.9 -7.9 -1.6 0.4 62 244 A Y S S+ 0 0 131 9,-0.2 -1,-0.2 -3,-0.1 9,-0.2 -0.677 75.9 149.6-116.4 82.8 -9.7 -4.6 -1.3 63 245 A H - 0 0 12 -2,-0.6 2,-0.3 7,-0.4 -2,-0.0 0.088 41.6-107.7 -89.7-151.8 -11.6 -3.3 -4.3 64 246 A N - 0 0 78 5,-0.1 2,-0.4 3,-0.0 5,-0.3 -1.000 21.6-166.3-143.6 142.8 -12.4 -5.2 -7.6 65 247 A V B > -D 68 0B 14 3,-4.9 3,-2.0 -2,-0.3 2,-1.5 -0.940 62.3 -55.7-135.0 116.8 -11.0 -4.9 -11.1 66 248 A G T 3 S- 0 0 72 -2,-0.4 3,-0.0 1,-0.3 -50,-0.0 -0.282 128.4 -15.4 55.1 -89.3 -12.7 -6.6 -14.2 67 249 A L T 3 S+ 0 0 163 -2,-1.5 2,-0.3 -3,-0.0 -1,-0.3 0.005 128.4 65.5-133.5 30.6 -12.6 -10.1 -12.7 68 250 A S B < -D 65 0B 68 -3,-2.0 -3,-4.9 2,-0.0 -62,-0.1 -0.997 59.4-147.8-150.2 153.2 -10.2 -9.8 -9.8 69 251 A K - 0 0 103 -2,-0.3 -5,-0.1 -5,-0.3 3,-0.1 -0.332 28.0-179.6-119.5 54.4 -10.0 -8.0 -6.4 70 252 A C - 0 0 30 -5,-0.1 -7,-0.4 -8,-0.1 -64,-0.1 0.089 36.9 -96.3 -42.0 167.9 -6.2 -7.4 -6.0 71 253 A E - 0 0 95 -9,-0.2 -66,-1.1 2,-0.0 -65,-0.3 -0.396 32.9-150.3 -86.8 170.5 -5.3 -5.6 -2.8 72 254 A I E +B 4 0A 2 -11,-1.7 2,-0.7 -68,-0.2 -68,-0.3 -0.634 21.2 168.9-147.6 91.7 -4.9 -1.8 -2.7 73 255 A K E -B 3 0A 111 -70,-2.0 -70,-0.8 -2,-0.2 -15,-0.1 -0.872 43.9-115.0-101.7 112.4 -2.5 -0.1 -0.2 74 256 A V E B 2 0A 26 -2,-0.7 -72,-0.4 -72,-0.3 -1,-0.1 0.170 360.0 360.0 -38.7 166.6 -2.2 3.5 -1.3 75 257 A A 0 0 50 -74,-4.7 -1,-0.1 -29,-0.2 -17,-0.1 -0.980 360.0 360.0-144.0 360.0 1.3 4.7 -2.5