==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 11-OCT-01 1IRQ . COMPND 2 MOLECULE: OMEGA TRANSCRIPTIONAL REPRESSOR; . SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; . AUTHOR K.MURAYAMA,P.ORTH,A.B.DE LA HOZ,J.C.ALONSO,W.SAENGER . 97 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6268.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 66 68.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 8.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 51 52.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 24 A I 0 0 230 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -28.9 -1.8 0.0 44.2 2 25 A M - 0 0 94 1,-0.1 58,-0.0 59,-0.0 2,-0.0 -0.692 360.0-149.0 -83.2 123.9 0.1 3.3 44.9 3 26 A G - 0 0 41 -2,-0.5 58,-2.7 57,-0.1 59,-0.3 -0.115 8.7-124.7 -81.4-176.2 -2.3 6.2 45.4 4 27 A D E -A 60 0A 74 56,-0.3 2,-0.3 57,-0.1 56,-0.2 -0.898 10.4-153.2-131.4 160.9 -1.7 9.9 44.6 5 28 A K E -A 59 0A 108 54,-2.7 54,-2.4 -2,-0.3 2,-0.3 -0.929 24.8-113.6-129.7 153.0 -1.7 13.2 46.4 6 29 A T E +A 58 0A 79 -2,-0.3 2,-0.3 52,-0.2 52,-0.2 -0.650 32.4 178.0 -92.1 147.2 -2.4 16.7 45.0 7 30 A V E -A 57 0A 10 50,-2.6 50,-2.6 -2,-0.3 2,-0.5 -0.976 27.4-122.6-143.1 153.9 0.2 19.4 44.9 8 31 A R E -A 56 0A 119 -2,-0.3 2,-0.3 48,-0.2 48,-0.2 -0.863 32.6-178.6-101.3 127.6 0.3 23.0 43.6 9 32 A V E -A 55 0A 0 46,-2.5 46,-2.9 -2,-0.5 71,-0.1 -0.933 38.1 -85.4-126.9 152.0 3.0 23.8 41.1 10 33 A R E > -A 54 0A 67 -2,-0.3 4,-2.1 44,-0.2 44,-0.3 -0.270 35.1-134.3 -54.1 133.4 3.9 27.0 39.2 11 34 A A H > S+ 0 0 36 42,-2.8 4,-2.3 1,-0.2 -1,-0.1 0.811 102.0 53.6 -62.1 -33.9 1.8 27.4 36.1 12 35 A D H > S+ 0 0 46 41,-0.3 4,-2.2 2,-0.2 -1,-0.2 0.909 109.5 47.2 -71.1 -38.7 4.7 28.3 33.9 13 36 A L H > S+ 0 0 0 2,-0.2 4,-2.1 1,-0.2 -2,-0.2 0.895 113.1 50.2 -67.1 -39.3 6.7 25.2 34.8 14 37 A H H X S+ 0 0 23 -4,-2.1 4,-3.0 1,-0.2 -2,-0.2 0.921 108.7 51.9 -64.2 -42.8 3.6 23.1 34.3 15 38 A H H X S+ 0 0 110 -4,-2.3 4,-2.7 1,-0.2 5,-0.2 0.917 107.8 52.1 -60.3 -43.7 3.0 24.7 30.9 16 39 A I H X S+ 0 0 45 -4,-2.2 4,-2.1 1,-0.2 -1,-0.2 0.924 113.3 43.8 -58.7 -45.3 6.6 23.9 29.8 17 40 A I H X S+ 0 0 1 -4,-2.1 4,-2.9 1,-0.2 5,-0.2 0.912 112.3 53.2 -66.9 -41.4 6.1 20.3 30.8 18 41 A K H X S+ 0 0 109 -4,-3.0 4,-2.1 2,-0.2 -2,-0.2 0.911 110.6 46.3 -59.7 -45.7 2.7 20.1 29.2 19 42 A I H X S+ 0 0 79 -4,-2.7 4,-1.3 2,-0.2 -1,-0.2 0.958 115.4 46.0 -61.6 -52.0 4.0 21.4 25.9 20 43 A E H X S+ 0 0 53 -4,-2.1 4,-1.2 -5,-0.2 3,-0.2 0.884 114.3 47.3 -58.9 -43.7 7.0 19.1 25.9 21 44 A T H X>S+ 0 0 11 -4,-2.9 4,-3.1 1,-0.2 5,-0.6 0.854 104.2 61.2 -69.0 -34.9 5.0 16.0 26.9 22 45 A A H <5S+ 0 0 72 -4,-2.1 -1,-0.2 -5,-0.2 -2,-0.2 0.856 100.6 57.5 -59.8 -34.8 2.3 16.7 24.2 23 46 A K H <5S+ 0 0 152 -4,-1.3 -2,-0.2 -3,-0.2 -1,-0.2 0.989 115.9 30.6 -59.1 -65.3 5.0 16.4 21.6 24 47 A N H <5S- 0 0 106 -4,-1.2 -2,-0.2 1,-0.1 -1,-0.2 0.907 111.8-118.8 -62.7 -43.8 6.1 12.8 22.4 25 48 A G T <5 + 0 0 59 -4,-3.1 -3,-0.2 -5,-0.2 -4,-0.1 0.403 66.9 122.7 121.2 -2.7 2.7 11.8 23.7 26 49 A G < - 0 0 50 -5,-0.6 2,-0.3 1,-0.1 -1,-0.1 0.075 60.7 -93.6 -77.1-166.9 3.1 10.9 27.3 27 50 A N > - 0 0 74 1,-0.1 4,-0.9 -5,-0.0 3,-0.5 -0.849 17.9-125.5-115.7 152.2 1.3 12.3 30.4 28 51 A V H > S+ 0 0 29 -2,-0.3 4,-2.5 1,-0.2 3,-0.4 0.832 104.3 64.7 -61.1 -35.6 2.3 15.1 32.7 29 52 A K H > S+ 0 0 50 1,-0.2 4,-2.9 2,-0.2 5,-0.2 0.898 97.1 54.6 -58.2 -42.2 1.9 13.0 35.9 30 53 A E H > S+ 0 0 118 -3,-0.5 4,-2.1 1,-0.2 -1,-0.2 0.875 111.1 47.3 -59.4 -35.5 4.8 10.7 34.9 31 54 A V H X S+ 0 0 13 -4,-0.9 4,-3.1 -3,-0.4 5,-0.2 0.924 110.1 50.7 -71.4 -45.2 7.0 13.7 34.5 32 55 A M H X S+ 0 0 0 -4,-2.5 4,-2.6 1,-0.2 5,-0.2 0.934 113.1 47.5 -57.2 -45.6 5.9 15.2 37.9 33 56 A D H X S+ 0 0 8 -4,-2.9 4,-2.8 2,-0.2 5,-0.2 0.903 113.1 47.0 -63.8 -41.6 6.7 11.8 39.5 34 57 A Q H X S+ 0 0 76 -4,-2.1 4,-2.6 -5,-0.2 5,-0.2 0.931 112.5 50.1 -66.5 -43.0 10.0 11.5 37.9 35 58 A A H X S+ 0 0 2 -4,-3.1 4,-1.8 1,-0.2 -2,-0.2 0.937 115.2 42.9 -59.4 -47.9 11.0 15.1 38.8 36 59 A L H X S+ 0 0 6 -4,-2.6 4,-2.3 -5,-0.2 -2,-0.2 0.916 113.4 50.5 -67.8 -42.3 10.0 14.6 42.4 37 60 A E H X S+ 0 0 43 -4,-2.8 4,-2.9 1,-0.2 5,-0.2 0.919 110.5 50.3 -63.3 -40.2 11.6 11.2 42.7 38 61 A E H X S+ 0 0 51 -4,-2.6 4,-1.5 -5,-0.2 -1,-0.2 0.892 109.3 51.4 -64.4 -37.2 14.9 12.4 41.3 39 62 A Y H X S+ 0 0 33 -4,-1.8 4,-2.9 -5,-0.2 5,-0.4 0.923 112.4 47.2 -63.2 -44.0 14.8 15.4 43.7 40 63 A I H X S+ 0 0 0 -4,-2.3 4,-2.7 1,-0.2 -2,-0.2 0.931 110.5 49.1 -65.6 -46.3 14.3 13.0 46.6 41 64 A R H < S+ 0 0 135 -4,-2.9 -1,-0.2 1,-0.2 -2,-0.2 0.808 117.2 45.2 -66.1 -23.9 17.0 10.5 45.6 42 65 A K H < S+ 0 0 112 -4,-1.5 -2,-0.2 -5,-0.2 -1,-0.2 0.931 130.4 17.3 -82.7 -51.2 19.4 13.5 45.2 43 66 A Y H < S+ 0 0 100 -4,-2.9 -3,-0.2 1,-0.2 -2,-0.2 0.616 134.4 38.0 -99.2 -16.0 18.7 15.5 48.4 44 67 A L S >< S+ 0 0 28 -4,-2.7 3,-1.5 -5,-0.4 4,-0.3 -0.400 77.0 178.4-131.9 55.7 16.9 12.9 50.5 45 68 A P T 3 + 0 0 69 0, 0.0 -4,-0.1 0, 0.0 -3,-0.1 -0.254 66.8 27.8 -60.2 148.4 18.7 9.6 49.8 46 69 A D T 3 S+ 0 0 159 2,-0.2 -5,-0.1 -5,-0.1 -6,-0.0 0.327 89.8 100.5 83.2 -6.9 17.5 6.6 51.7 47 70 A K < 0 0 112 -3,-1.5 -6,-0.1 -7,-0.2 -1,-0.1 0.731 360.0 360.0 -79.2 -22.1 14.0 7.9 52.1 48 71 A L 0 0 88 -4,-0.3 -2,-0.2 -8,-0.1 15,-0.0 -0.786 360.0 360.0-112.5 360.0 12.9 5.6 49.2 49 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 50 23 B D 0 0 218 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -18.8 6.0 39.1 38.2 51 24 B I + 0 0 162 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.356 360.0 165.8 -74.1 153.8 2.7 37.4 38.8 52 25 B M - 0 0 100 -2,-0.1 2,-0.1 -41,-0.0 -42,-0.0 -0.875 20.3-147.6-167.9 131.6 2.2 33.6 38.3 53 26 B G - 0 0 45 -2,-0.3 -42,-2.8 1,-0.1 -41,-0.3 -0.380 19.9-118.8 -95.8 178.9 -0.6 31.3 39.3 54 27 B D E -A 10 0A 63 -44,-0.3 2,-0.4 -43,-0.1 -44,-0.2 -0.770 13.0-144.1-117.2 164.7 -0.4 27.6 40.3 55 28 B K E -A 9 0A 98 -46,-2.9 -46,-2.5 -2,-0.3 2,-0.5 -0.975 19.1-123.2-128.0 140.1 -1.8 24.5 38.8 56 29 B T E +A 8 0A 51 -2,-0.4 2,-0.3 -48,-0.2 -48,-0.2 -0.724 39.7 165.3 -85.4 128.7 -3.0 21.4 40.8 57 30 B V E -A 7 0A 13 -50,-2.6 -50,-2.6 -2,-0.5 2,-0.3 -0.868 30.6-119.1-134.3 168.4 -1.3 18.2 39.7 58 31 B R E -A 6 0A 136 -2,-0.3 2,-0.3 -52,-0.2 -52,-0.2 -0.863 25.9-178.8-112.5 147.5 -1.1 14.7 41.3 59 32 B V E -A 5 0A 1 -54,-2.4 -54,-2.7 -2,-0.3 5,-0.1 -0.974 43.5 -74.1-140.8 154.0 2.1 12.9 42.4 60 33 B R E > -A 4 0A 59 -2,-0.3 4,-2.4 -56,-0.2 -56,-0.3 -0.166 40.8-130.6 -47.2 134.6 2.7 9.5 43.9 61 34 B A H > S+ 0 0 20 -58,-2.7 4,-2.8 1,-0.2 5,-0.2 0.844 105.0 54.4 -60.1 -36.8 1.6 9.4 47.5 62 35 B D H > S+ 0 0 43 -59,-0.3 4,-1.6 2,-0.2 -1,-0.2 0.893 110.5 45.9 -68.0 -35.8 4.9 7.9 48.7 63 36 B L H > S+ 0 0 0 -3,-0.2 4,-1.6 2,-0.2 -2,-0.2 0.919 114.1 49.1 -69.6 -43.3 6.9 10.7 47.2 64 37 B H H X S+ 0 0 29 -4,-2.4 4,-2.8 1,-0.2 -2,-0.2 0.924 107.6 54.5 -61.0 -44.6 4.5 13.3 48.5 65 38 B H H X S+ 0 0 89 -4,-2.8 4,-2.5 1,-0.2 -1,-0.2 0.903 105.0 54.4 -56.9 -43.2 4.7 11.7 52.0 66 39 B I H X S+ 0 0 15 -4,-1.6 4,-1.6 1,-0.2 -1,-0.2 0.915 112.9 40.8 -59.2 -45.5 8.4 12.0 52.1 67 40 B I H X S+ 0 0 4 -4,-1.6 4,-2.7 2,-0.2 5,-0.3 0.906 112.2 56.2 -70.4 -40.9 8.5 15.7 51.3 68 41 B K H X S+ 0 0 86 -4,-2.8 4,-1.1 1,-0.2 -2,-0.2 0.915 108.1 48.8 -55.2 -46.8 5.5 16.4 53.6 69 42 B I H X S+ 0 0 71 -4,-2.5 4,-0.9 -5,-0.2 -1,-0.2 0.903 112.8 47.3 -61.9 -43.5 7.4 14.8 56.5 70 43 B E H >X S+ 0 0 41 -4,-1.6 4,-0.7 1,-0.2 3,-0.6 0.917 112.8 46.5 -66.2 -45.2 10.6 16.9 55.8 71 44 B T H 3< S+ 0 0 21 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.661 107.3 60.4 -72.1 -15.8 8.8 20.2 55.4 72 45 B A H 3< S+ 0 0 74 -4,-1.1 -1,-0.2 -5,-0.3 -2,-0.2 0.748 91.6 70.3 -82.0 -25.2 6.9 19.5 58.6 73 46 B K H << S- 0 0 118 -4,-0.9 -2,-0.2 -3,-0.6 -1,-0.1 0.984 124.6 -51.0 -53.9 -72.0 10.0 19.2 60.7 74 47 B N S < S+ 0 0 157 -4,-0.7 2,-0.3 1,-0.4 -3,-0.1 0.352 112.3 15.6-132.3 -91.5 11.1 22.9 60.7 75 48 B G S S+ 0 0 67 -5,-0.1 -1,-0.4 2,-0.0 2,-0.2 -0.743 83.5 82.2 -98.5 144.3 11.3 25.0 57.5 76 49 B G - 0 0 56 -2,-0.3 2,-0.3 -3,-0.1 3,-0.1 -0.623 47.1-139.0 143.3 157.6 9.9 24.0 54.2 77 50 B N > - 0 0 71 -2,-0.2 4,-2.1 1,-0.1 5,-0.2 -0.978 17.9-137.7-147.8 130.3 6.8 23.9 51.9 78 51 B V H > S+ 0 0 31 -2,-0.3 4,-2.8 1,-0.2 5,-0.2 0.900 106.2 53.8 -54.7 -44.3 5.7 21.0 49.6 79 52 B K H > S+ 0 0 27 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.905 108.5 49.0 -57.4 -45.6 4.8 23.4 46.9 80 53 B E H > S+ 0 0 113 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.879 111.6 49.4 -63.8 -39.5 8.3 25.0 47.0 81 54 B V H X S+ 0 0 16 -4,-2.1 4,-2.8 2,-0.2 -2,-0.2 0.931 110.8 49.5 -65.8 -45.3 9.9 21.6 46.8 82 55 B M H X S+ 0 0 3 -4,-2.8 4,-2.4 2,-0.2 -2,-0.2 0.911 110.6 50.1 -61.0 -42.1 7.8 20.5 43.9 83 56 B D H X S+ 0 0 4 -4,-2.4 4,-2.7 1,-0.2 -1,-0.2 0.923 112.7 46.9 -62.3 -43.6 8.6 23.7 42.0 84 57 B Q H X S+ 0 0 78 -4,-2.2 4,-2.2 2,-0.2 -2,-0.2 0.901 110.4 53.1 -64.2 -40.8 12.3 23.2 42.6 85 58 B A H X S+ 0 0 2 -4,-2.8 4,-2.0 1,-0.2 -2,-0.2 0.899 111.4 46.2 -62.6 -38.8 12.1 19.6 41.6 86 59 B L H X S+ 0 0 0 -4,-2.4 4,-3.1 2,-0.2 5,-0.3 0.947 109.6 53.6 -68.6 -46.7 10.4 20.6 38.3 87 60 B E H X S+ 0 0 85 -4,-2.7 4,-2.3 1,-0.2 -2,-0.2 0.873 111.3 46.1 -56.1 -38.5 13.0 23.3 37.7 88 61 B E H X S+ 0 0 30 -4,-2.2 4,-1.8 2,-0.2 -1,-0.2 0.890 111.6 51.5 -72.4 -37.0 15.8 20.8 38.1 89 62 B Y H X>S+ 0 0 29 -4,-2.0 4,-3.1 -5,-0.2 5,-0.6 0.934 112.2 46.3 -63.0 -45.4 14.1 18.3 35.9 90 63 B I H X5S+ 0 0 1 -4,-3.1 4,-2.2 1,-0.2 -2,-0.2 0.931 111.6 50.8 -63.0 -45.8 13.6 20.9 33.2 91 64 B R H <5S+ 0 0 157 -4,-2.3 -1,-0.2 -5,-0.3 -2,-0.2 0.826 117.8 41.4 -61.5 -30.8 17.2 22.1 33.5 92 65 B K H <5S+ 0 0 125 -4,-1.8 -2,-0.2 -5,-0.1 -1,-0.2 0.925 131.2 18.4 -83.3 -49.1 18.4 18.4 33.2 93 66 B Y H <5S+ 0 0 89 -4,-3.1 -3,-0.2 1,-0.2 -2,-0.2 0.699 133.5 36.2 -97.9 -24.9 16.1 17.0 30.5 94 67 B L ><< + 0 0 14 -4,-2.2 3,-0.6 -5,-0.6 -1,-0.2 -0.385 63.7 147.4-127.0 54.2 14.8 20.1 28.7 95 68 B P G > + 0 0 75 0, 0.0 3,-1.1 0, 0.0 2,-0.2 0.733 58.6 83.9 -60.6 -23.0 17.8 22.5 28.8 96 69 B D G 3 S+ 0 0 133 1,-0.2 -5,-0.1 -3,-0.1 -6,-0.0 0.151 72.2 82.9 -69.3 23.6 16.7 23.9 25.5 97 70 B K G < 0 0 90 -3,-0.6 -1,-0.2 1,-0.4 -6,-0.1 0.863 360.0 360.0 -91.7 -48.5 14.4 26.1 27.6 98 71 B L < 0 0 178 -3,-1.1 -1,-0.4 -4,-0.2 0, 0.0 -0.872 360.0 360.0-147.7 360.0 16.9 28.8 28.5