==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 27-JUN-96 1IRV . COMPND 2 MOLECULE: CYTOCHROME C; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR A.M.BERGHUIS,G.D.BRAYER . 108 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6457.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 63.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 13.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 32.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -5 A T 0 0 130 0, 0.0 3,-0.0 0, 0.0 65,-0.0 0.000 360.0 360.0 360.0 159.6 4.8 11.3 -7.3 2 -4 A E + 0 0 184 2,-0.0 2,-0.5 0, 0.0 0, 0.0 0.018 360.0 91.6-127.7 14.1 1.3 11.7 -6.1 3 -3 A F - 0 0 17 94,-0.0 2,-0.5 67,-0.0 64,-0.1 -0.956 55.0-168.3-117.6 128.4 2.0 15.4 -5.5 4 -2 A K - 0 0 163 -2,-0.5 97,-0.1 1,-0.1 -2,-0.0 -0.939 27.9-117.0-116.9 122.7 1.4 18.1 -8.0 5 -1 A A + 0 0 71 -2,-0.5 2,-0.2 1,-0.1 93,-0.2 0.111 39.6 170.3 -47.5 163.9 2.8 21.6 -7.4 6 1 A G - 0 0 32 91,-0.4 2,-0.6 92,-0.2 -1,-0.1 -0.742 41.8 -23.5-154.9-160.6 0.5 24.5 -6.9 7 2 A S > - 0 0 57 -2,-0.2 4,-2.6 1,-0.1 95,-0.3 -0.631 37.3-166.2 -79.3 115.0 0.4 28.0 -5.9 8 3 A A H > S+ 0 0 25 -2,-0.6 4,-2.0 1,-0.3 -1,-0.1 0.745 95.7 50.5 -64.6 -36.9 3.2 29.1 -3.7 9 4 A K H > S+ 0 0 170 2,-0.2 4,-0.9 1,-0.2 -1,-0.3 0.714 109.3 52.2 -76.5 -22.0 1.3 32.3 -2.9 10 5 A K H > S+ 0 0 56 2,-0.2 4,-1.9 1,-0.1 3,-0.4 0.915 111.2 46.9 -77.2 -43.4 -1.7 30.2 -2.1 11 6 A G H X S+ 0 0 0 -4,-2.6 4,-2.9 87,-0.3 -2,-0.2 0.915 103.7 60.9 -57.6 -56.0 0.5 28.0 0.3 12 7 A A H X S+ 0 0 23 -4,-2.0 4,-1.2 1,-0.3 -1,-0.2 0.748 110.7 42.7 -36.8 -49.5 2.1 31.0 2.1 13 8 A T H X S+ 0 0 79 -4,-0.9 4,-2.1 -3,-0.4 -1,-0.3 0.833 109.0 52.9 -71.8 -50.9 -1.3 32.1 3.2 14 9 A L H X S+ 0 0 24 -4,-1.9 4,-1.7 1,-0.2 5,-0.3 0.987 110.8 52.2 -47.3 -56.2 -2.8 28.7 4.2 15 10 A F H X>S+ 0 0 2 -4,-2.9 4,-3.4 2,-0.2 5,-1.3 0.808 108.1 49.5 -52.9 -41.8 0.2 28.3 6.4 16 11 A K H X>S+ 0 0 73 -4,-1.2 4,-1.2 1,-0.2 5,-0.6 0.999 118.2 38.8 -60.4 -66.9 -0.2 31.7 8.1 17 12 A T H <5S+ 0 0 107 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.563 131.9 28.7 -55.6 -15.6 -3.9 31.0 8.8 18 13 A R H <5S+ 0 0 95 -4,-1.7 -3,-0.2 -5,-0.3 -1,-0.2 0.707 132.9 9.4-125.5 -18.8 -3.2 27.3 9.6 19 14 A C H >X5S+ 0 0 23 -4,-3.4 4,-0.8 -5,-0.3 3,-0.6 0.387 100.3 81.9-140.9 -0.2 0.3 26.6 11.0 20 15 A L T 3< S- 0 0 90 1,-0.1 3,-1.5 12,-0.1 12,-0.3 -0.450 82.4 -97.9 -73.0 153.6 12.8 30.4 8.2 27 22 A K T 3 S+ 0 0 156 1,-0.3 -1,-0.1 10,-0.1 -2,-0.1 -0.411 114.4 21.4 -65.8 126.9 16.3 29.2 9.0 28 23 A G T 3 S+ 0 0 75 1,-0.4 -1,-0.3 -2,-0.2 -2,-0.1 0.715 91.9 129.4 87.6 12.2 17.2 30.6 12.5 29 24 A G < - 0 0 15 -3,-1.5 -1,-0.4 -5,-0.1 2,-0.1 -0.706 58.9-110.0 -95.6 157.7 13.5 31.1 13.5 30 25 A P - 0 0 80 0, 0.0 -6,-0.3 0, 0.0 2,-0.1 -0.446 21.4-101.6 -91.0 161.6 12.6 29.6 16.9 31 26 A H + 0 0 67 -2,-0.1 2,-0.2 5,-0.1 -8,-0.1 -0.507 43.7 170.0 -77.0 153.6 10.5 26.7 18.0 32 27 A K - 0 0 90 2,-2.1 -10,-0.1 -10,-0.5 -9,-0.1 -0.283 68.5 -33.9-130.6-141.5 7.0 27.7 19.3 33 28 A V S S+ 0 0 105 -12,-0.3 -10,-0.1 -2,-0.2 -11,-0.1 0.972 140.2 30.6 -51.7 -55.7 4.3 25.2 20.0 34 29 A G S S- 0 0 6 -12,-3.1 -2,-2.1 1,-0.1 -10,-0.2 -0.599 106.4 -85.8 -99.9 166.7 5.5 23.1 17.2 35 30 A P - 0 0 17 0, 0.0 2,-0.1 0, 0.0 -11,-0.1 -0.118 48.5 -89.9 -59.6 165.3 9.1 22.8 16.0 36 31 A N - 0 0 15 -13,-0.1 -11,-0.2 -7,-0.1 -5,-0.1 -0.398 32.7-146.3 -79.2 144.5 10.8 25.1 13.5 37 32 A L > + 0 0 23 -13,-4.0 3,-1.5 -2,-0.1 -12,-0.2 0.785 48.4 130.4 -90.2 -16.5 10.4 23.9 9.9 38 33 A H T 3 S+ 0 0 42 -12,-0.3 70,-0.1 -14,-0.3 69,-0.1 -0.040 83.1 6.1 -46.4 132.4 13.7 24.9 8.2 39 34 A G T 3 S+ 0 0 28 68,-2.0 -1,-0.3 -14,-0.2 69,-0.1 0.719 86.1 145.9 60.6 38.3 15.3 22.1 6.3 40 35 A I X + 0 0 15 -3,-1.5 3,-2.6 67,-0.2 24,-0.3 0.914 40.9 82.0 -61.6 -52.1 12.3 19.8 6.9 41 36 A F T 3 S+ 0 0 34 1,-0.3 24,-0.2 -4,-0.2 3,-0.1 -0.368 101.6 17.3 -67.6 137.9 12.3 17.7 3.7 42 37 A G T 3 S+ 0 0 60 22,-5.2 2,-0.3 1,-0.4 -1,-0.3 0.208 106.3 119.3 87.6 -13.5 14.6 14.9 3.4 43 38 A R < - 0 0 73 -3,-2.6 21,-2.1 21,-0.3 -1,-0.4 -0.649 66.9-121.7 -90.2 142.1 14.7 15.3 7.2 44 39 A H B > -A 63 0A 74 -2,-0.3 3,-0.6 19,-0.2 19,-0.2 -0.539 40.6 -81.8 -84.8 146.5 13.6 12.5 9.5 45 40 A S T 3 S+ 0 0 1 17,-2.8 16,-0.2 1,-0.2 -1,-0.1 -0.051 103.2 5.2 -53.2 136.5 10.8 13.0 12.0 46 41 A G T 3 S+ 0 0 15 1,-0.1 -1,-0.2 -3,-0.1 7,-0.2 0.883 86.4 124.0 55.4 53.1 11.4 14.6 15.4 47 42 A Q < + 0 0 120 -3,-0.6 2,-0.3 2,-0.1 -2,-0.1 0.357 23.6 118.8-125.0 6.0 15.1 15.6 15.0 48 43 A A > - 0 0 20 -12,-0.1 3,-1.1 1,-0.0 2,-0.3 -0.624 66.4-120.4 -73.5 132.9 15.4 19.4 15.6 49 44 A E T 3 S+ 0 0 181 -2,-0.3 3,-0.1 1,-0.2 -2,-0.1 -0.644 93.9 31.4 -78.1 136.6 17.7 20.0 18.6 50 45 A G T 3 S+ 0 0 83 -2,-0.3 2,-0.4 1,-0.3 -1,-0.2 0.446 97.7 104.5 94.6 8.2 16.1 21.8 21.5 51 46 A Y < - 0 0 46 -3,-1.1 2,-1.0 -5,-0.1 -1,-0.3 -0.970 62.5-141.3-126.8 138.9 12.6 20.4 20.9 52 47 A S - 0 0 106 -2,-0.4 2,-0.4 -3,-0.1 3,-0.1 -0.747 24.7-170.2-100.5 103.1 10.7 17.7 22.9 53 48 A Y - 0 0 29 -2,-1.0 30,-0.0 -7,-0.2 -19,-0.0 -0.878 31.6 -96.5 -99.4 138.9 8.8 15.7 20.4 54 49 A T > - 0 0 29 -2,-0.4 4,-1.8 1,-0.1 29,-0.1 0.216 32.4-116.8 -38.4 158.4 6.2 13.1 21.5 55 50 A D H > S+ 0 0 118 27,-0.2 4,-1.6 2,-0.2 -1,-0.1 0.782 115.9 62.9 -76.9 -25.6 7.6 9.6 21.6 56 51 A A H > S+ 0 0 28 26,-0.4 4,-0.5 2,-0.2 3,-0.3 0.912 105.4 41.6 -60.2 -57.5 5.0 8.9 18.9 57 52 A N H >> S+ 0 0 14 1,-0.2 3,-2.7 2,-0.2 4,-0.7 0.982 112.4 56.1 -53.9 -63.1 6.6 11.3 16.4 58 53 A I H 3< S+ 0 0 79 -4,-1.8 3,-0.4 1,-0.3 -1,-0.2 0.691 109.1 43.7 -39.6 -43.4 10.1 10.2 17.3 59 54 A K H 3< S+ 0 0 172 -4,-1.6 -1,-0.3 -3,-0.3 -2,-0.2 0.439 94.6 77.4 -90.6 0.4 9.6 6.5 16.6 60 55 A K H << S- 0 0 86 -3,-2.7 -1,-0.2 -4,-0.5 -2,-0.2 0.774 76.8-164.6 -74.7 -23.9 7.7 7.1 13.3 61 56 A N < - 0 0 85 -4,-0.7 -3,-0.1 -3,-0.4 -1,-0.1 0.622 18.8-175.0 37.4 30.0 11.2 7.8 11.8 62 57 A V - 0 0 8 -5,-0.4 -17,-2.8 -18,-0.1 2,-0.6 -0.145 24.8-135.0 -48.3 139.8 9.3 9.4 8.9 63 58 A L B -A 44 0A 96 -19,-0.2 2,-0.9 -3,-0.1 -19,-0.2 -0.925 24.9-130.0-106.1 105.3 11.3 10.5 6.0 64 59 A W + 0 0 13 -21,-2.1 -22,-5.2 -2,-0.6 2,-0.3 -0.521 45.4 147.9 -72.5 103.8 10.0 14.0 5.0 65 60 A D >> - 0 0 67 -2,-0.9 4,-2.0 -24,-0.2 3,-2.0 -0.981 63.4-105.3-137.6 136.9 9.2 14.2 1.3 66 61 A E T 34 S+ 0 0 33 -2,-0.3 4,-0.3 1,-0.3 34,-0.1 0.679 127.1 49.6 -27.1 -38.6 6.5 16.3 -0.3 67 62 A N T >> S+ 0 0 63 2,-0.2 4,-1.3 1,-0.1 3,-0.7 0.875 110.9 46.6 -71.0 -52.0 4.7 12.9 -0.8 68 63 A N H <> S+ 0 0 28 -3,-2.0 4,-2.1 1,-0.2 3,-0.2 0.965 111.5 53.8 -54.6 -55.9 5.2 11.8 2.9 69 64 A M H 3X S+ 0 0 11 -4,-2.0 4,-1.7 1,-0.2 -1,-0.2 0.532 102.3 56.7 -58.9 -20.9 4.0 15.2 4.1 70 65 A S H <> S+ 0 0 17 -3,-0.7 4,-1.2 -4,-0.3 -1,-0.2 0.850 106.6 46.5 -83.0 -47.2 0.8 15.2 2.2 71 66 A E H >X S+ 0 0 97 -4,-1.3 4,-0.8 -3,-0.2 3,-0.7 0.972 114.8 53.7 -51.8 -49.0 -0.5 12.0 3.6 72 67 A Y H >< S+ 0 0 20 -4,-2.1 3,-0.8 1,-0.2 -2,-0.2 0.841 105.0 48.5 -56.0 -51.3 0.6 13.6 6.9 73 68 A L H 3< S+ 0 0 15 -4,-1.7 17,-2.8 1,-0.2 -1,-0.2 0.595 98.9 72.3 -71.8 -10.2 -1.4 16.9 6.6 74 69 A T H << S- 0 0 40 -4,-1.2 -1,-0.2 -3,-0.7 -2,-0.2 0.915 131.2 -28.4 -63.0 -43.4 -4.4 14.9 5.7 75 70 A N S+ 0 0 1 0, 0.0 4,-5.5 0, 0.0 7,-0.1 0.799 84.5 59.9 -62.2 -40.3 -1.6 13.4 11.4 77 72 A X H 4 S+ 0 0 152 10,-0.5 5,-0.1 2,-0.2 11,-0.1 0.666 109.6 44.1 -65.2 -22.5 -3.1 11.6 14.4 78 73 A K H 4 S+ 0 0 165 -3,-0.5 -1,-0.2 -6,-0.2 -6,-0.1 0.780 116.5 48.9 -85.8 -41.0 -4.1 8.8 12.0 79 74 A Y H < S+ 0 0 37 -4,-1.5 -2,-0.2 1,-0.3 -7,-0.1 0.943 133.9 9.9 -63.8 -53.1 -0.6 9.0 10.5 80 75 A M S >< S- 0 0 2 -4,-5.5 3,-1.4 -8,-0.1 2,-0.4 -0.836 80.8-149.9-135.8 95.5 1.2 9.0 13.8 81 76 A P T 3 S+ 0 0 101 0, 0.0 -3,-0.1 0, 0.0 -4,-0.1 -0.558 83.8 31.0 -69.9 122.5 -1.1 8.2 16.7 82 77 A G T 3 S+ 0 0 56 -2,-0.4 -26,-0.4 1,-0.4 -27,-0.2 0.331 80.6 132.2 114.7 -7.7 0.2 9.9 19.8 83 78 A T < - 0 0 8 -3,-1.4 -1,-0.4 -27,-0.1 2,-0.1 -0.402 61.3-129.2 -64.0 140.1 1.8 13.1 18.2 84 79 A K + 0 0 120 -2,-0.1 2,-1.0 -3,-0.1 -1,-0.1 -0.108 61.7 138.5 -94.0 44.2 0.8 16.3 20.0 85 80 A M - 0 0 43 1,-0.1 2,-1.5 2,-0.1 -8,-0.1 -0.807 44.3-157.9 -87.3 114.6 -0.1 17.7 16.7 86 81 A A + 0 0 90 -2,-1.0 2,-0.4 -10,-0.1 -1,-0.1 -0.507 54.1 116.0 -83.8 60.0 -3.3 19.5 17.5 87 82 A F - 0 0 32 -2,-1.5 -10,-0.5 1,-0.1 3,-0.1 -0.967 49.4-167.0-139.3 118.3 -4.4 19.4 13.8 88 83 A G - 0 0 58 -2,-0.4 2,-0.2 1,-0.2 -1,-0.1 0.793 55.3-121.0 -68.0 -34.7 -7.3 17.5 12.3 89 84 A G - 0 0 10 -14,-0.1 2,-0.6 -13,-0.1 -15,-0.3 -0.570 15.8 -66.5 124.8 172.3 -5.9 18.0 8.7 90 85 A L - 0 0 11 -17,-2.8 3,-0.0 -20,-0.2 -3,-0.0 -0.937 38.0-175.4-107.7 103.5 -6.2 19.3 5.1 91 86 A K + 0 0 193 -2,-0.6 2,-0.6 1,-0.1 -1,-0.1 0.842 60.2 84.6 -72.4 -33.4 -9.0 17.3 3.7 92 87 A K > - 0 0 125 1,-0.1 4,-1.9 -3,-0.1 3,-0.4 -0.709 67.7-149.8 -89.3 118.6 -8.4 18.9 0.3 93 88 A E H > S+ 0 0 124 -2,-0.6 4,-1.4 1,-0.2 -1,-0.1 0.785 97.8 50.5 -44.9 -45.3 -5.8 17.7 -2.2 94 89 A K H > S+ 0 0 124 2,-0.2 4,-4.1 1,-0.2 -1,-0.2 0.914 106.9 48.5 -63.6 -54.1 -5.4 21.3 -3.6 95 90 A D H > S+ 0 0 23 -3,-0.4 4,-4.2 1,-0.3 -1,-0.2 0.961 115.1 49.3 -51.4 -50.4 -4.8 23.3 -0.3 96 91 A R H X S+ 0 0 33 -4,-1.9 4,-2.1 2,-0.2 -1,-0.3 0.840 110.5 48.8 -55.7 -39.9 -2.3 20.6 0.5 97 92 A N H X S+ 0 0 17 -4,-1.4 4,-1.1 -5,-0.3 -91,-0.4 0.984 113.1 49.4 -68.0 -44.5 -0.7 21.0 -2.9 98 93 A D H >X S+ 0 0 16 -4,-4.1 4,-2.2 1,-0.2 3,-1.8 0.957 112.2 47.0 -49.2 -63.2 -0.6 24.6 -2.4 99 94 A L H 3X S+ 0 0 2 -4,-4.2 4,-3.8 1,-0.3 -1,-0.2 0.824 110.5 47.3 -49.8 -52.5 1.0 24.4 1.0 100 95 A I H 3X S+ 0 0 0 -4,-2.1 4,-1.5 2,-0.3 -1,-0.3 0.562 107.6 57.3 -69.5 -13.6 3.8 21.9 0.4 101 96 A T H X S+ 0 0 20 -4,-2.2 4,-2.8 -95,-0.3 3,-1.4 0.980 116.9 45.3 -59.5 -64.8 5.1 26.7 -0.1 103 98 A L H 3X S+ 0 0 9 -4,-3.8 4,-1.7 1,-0.3 -1,-0.2 0.848 111.4 54.0 -51.0 -37.3 6.7 24.6 2.5 104 99 A K H 3< S+ 0 0 68 -4,-1.5 -1,-0.3 -5,-0.2 -2,-0.2 0.851 117.1 38.7 -71.1 -24.7 9.1 23.1 -0.2 105 100 A K H X< S+ 0 0 115 -4,-1.5 3,-1.1 -3,-1.4 -2,-0.2 0.973 120.2 40.9 -85.8 -55.1 10.0 26.7 -1.1 106 101 A A H 3< S+ 0 0 28 -4,-2.8 -3,-0.2 1,-0.3 -2,-0.2 0.801 112.0 53.2 -65.0 -34.9 10.2 28.5 2.3 107 102 A T T 3< 0 0 1 -4,-1.7 -68,-2.0 -5,-0.3 -1,-0.3 0.219 360.0 360.0 -82.8 11.9 11.9 25.7 4.3 108 103 A E < 0 0 165 -3,-1.1 -1,-0.2 -70,-0.1 -2,-0.1 0.925 360.0 360.0 -94.2 360.0 14.8 25.4 1.8