==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 27-JUN-96 1IRW . COMPND 2 MOLECULE: CYTOCHROME C; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR A.M.BERGHUIS,G.D.BRAYER . 108 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6641.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 56.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 32.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -5 A T 0 0 166 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 129.2 4.2 10.9 -9.4 2 -4 A E + 0 0 170 1,-0.5 2,-0.3 0, 0.0 0, 0.0 0.295 360.0 58.1-162.3 0.9 1.4 11.3 -6.8 3 -3 A F - 0 0 20 94,-0.0 -1,-0.5 67,-0.0 2,-0.3 -0.979 64.5-161.7-138.6 140.4 1.8 15.0 -5.8 4 -2 A K - 0 0 149 -2,-0.3 2,-0.3 -3,-0.1 97,-0.1 -0.896 28.1 -95.4-128.7 154.3 1.6 18.0 -8.1 5 -1 A A + 0 0 83 -2,-0.3 93,-0.2 1,-0.1 2,-0.1 -0.543 43.2 178.3 -75.9 132.4 2.7 21.7 -7.8 6 1 A G - 0 0 28 91,-0.8 2,-0.4 -2,-0.3 3,-0.1 -0.171 43.3 -49.9-110.4-162.5 0.2 24.3 -6.5 7 2 A S > - 0 0 45 1,-0.2 4,-1.9 -2,-0.1 95,-0.4 -0.647 35.4-162.4 -80.0 128.2 0.3 28.0 -5.8 8 3 A A H > S+ 0 0 39 -2,-0.4 4,-3.5 2,-0.2 5,-0.2 0.944 95.7 52.4 -76.3 -42.3 3.1 29.1 -3.6 9 4 A K H > S+ 0 0 176 1,-0.3 4,-1.7 2,-0.2 -1,-0.2 0.939 112.2 45.2 -51.3 -50.2 1.3 32.4 -2.8 10 5 A K H > S+ 0 0 111 1,-0.2 4,-1.7 2,-0.2 -1,-0.3 0.876 112.4 52.2 -62.8 -39.5 -1.8 30.3 -1.9 11 6 A G H >X S+ 0 0 0 -4,-1.9 4,-2.8 87,-0.3 3,-0.5 0.955 105.9 54.9 -60.6 -53.6 0.5 28.0 0.2 12 7 A A H 3X S+ 0 0 18 -4,-3.5 4,-1.8 1,-0.3 -1,-0.2 0.795 111.2 44.6 -49.4 -44.4 2.0 31.0 2.0 13 8 A T H 3X S+ 0 0 76 -4,-1.7 4,-2.1 -5,-0.2 -1,-0.3 0.714 110.3 52.3 -77.5 -27.3 -1.4 32.2 3.1 14 9 A L H S+ 0 0 4 -4,-2.8 4,-4.1 2,-0.2 5,-1.8 0.965 109.7 48.9 -52.6 -55.7 0.4 28.4 6.3 16 11 A K H <5S+ 0 0 123 -4,-1.8 4,-0.4 -5,-0.2 5,-0.4 0.946 117.5 43.0 -55.0 -44.6 -0.1 31.7 8.0 17 12 A T H <5S+ 0 0 117 -4,-2.1 -2,-0.2 1,-0.2 -1,-0.2 0.749 133.6 16.1 -76.5 -24.1 -3.8 30.9 8.6 18 13 A R H <5S+ 0 0 105 -4,-3.1 -3,-0.2 -3,-0.2 -2,-0.2 0.558 133.8 28.0-121.8 -21.3 -3.3 27.3 9.8 19 14 A C T >X5S+ 0 0 21 -4,-4.1 4,-1.2 -5,-0.4 3,-1.1 0.665 98.3 73.9-113.6 -21.2 0.4 26.6 10.7 20 15 A L T 34 S- 0 0 97 1,-0.1 3,-2.1 12,-0.1 2,-0.5 -0.199 80.0-100.6 -60.7 146.8 12.8 30.7 8.5 27 22 A K T 3 S+ 0 0 169 1,-0.3 -1,-0.1 10,-0.1 -2,-0.1 -0.506 117.3 17.0 -62.5 110.5 16.4 29.6 8.9 28 23 A G T 3 S+ 0 0 76 -2,-0.5 -1,-0.3 1,-0.3 -2,-0.1 0.713 93.2 144.9 88.4 19.4 17.2 30.5 12.5 29 24 A G < - 0 0 12 -3,-2.1 -1,-0.3 -4,-0.1 7,-0.2 -0.644 52.4-110.2 -86.3 150.2 13.5 30.8 13.3 30 25 A P - 0 0 83 0, 0.0 -6,-0.3 0, 0.0 2,-0.1 -0.529 22.6-111.3 -81.1 149.5 12.7 29.7 16.9 31 26 A H + 0 0 61 -2,-0.2 2,-0.1 5,-0.1 -8,-0.1 -0.549 44.1 170.3 -70.6 147.8 10.8 26.5 17.8 32 27 A K - 0 0 98 2,-3.9 -10,-0.1 -10,-0.5 -9,-0.1 0.005 68.4 -30.7-123.8-120.0 7.4 27.6 19.3 33 28 A V S S+ 0 0 98 -12,-0.3 -10,-0.1 -2,-0.1 -11,-0.1 0.921 144.7 30.4 -63.1 -47.8 4.5 25.1 20.0 34 29 A G S S- 0 0 6 -12,-3.1 -2,-3.9 1,-0.1 -10,-0.1 -0.705 105.3 -92.0-106.4 165.8 5.9 23.2 17.1 35 30 A P - 0 0 16 0, 0.0 -11,-0.3 0, 0.0 2,-0.1 -0.259 46.7 -89.4 -72.5 163.7 9.5 23.1 16.0 36 31 A N - 0 0 15 -7,-0.2 -11,-0.2 -13,-0.1 -5,-0.1 -0.444 36.3-153.4 -68.1 142.0 11.1 25.4 13.4 37 32 A L > + 0 0 26 -13,-2.6 3,-2.8 -2,-0.1 4,-0.2 0.435 43.8 137.4-102.2 3.0 10.6 23.6 10.0 38 33 A H T 3 S+ 0 0 36 -12,-0.3 70,-0.1 1,-0.3 -12,-0.1 -0.304 81.8 7.9 -49.5 124.6 13.5 25.1 8.2 39 34 A G T 3 S+ 0 0 32 68,-2.3 4,-0.4 -14,-0.2 -1,-0.3 0.561 83.4 145.1 78.0 13.6 15.0 22.2 6.2 40 35 A I X + 0 0 13 -3,-2.8 3,-1.7 2,-0.1 24,-0.4 0.875 48.1 81.1 -46.6 -49.1 12.2 19.7 6.9 41 36 A F T 3 S+ 0 0 44 1,-0.3 24,-0.2 -4,-0.2 3,-0.1 -0.478 99.6 25.1 -63.3 129.6 12.3 17.9 3.6 42 37 A G T 3 S+ 0 0 55 22,-2.7 -1,-0.3 1,-0.5 -2,-0.1 -0.115 107.5 105.9 104.9 -33.3 15.2 15.4 3.5 43 38 A R < - 0 0 61 -3,-1.7 21,-3.9 -4,-0.4 -1,-0.5 -0.335 70.0-123.7 -81.1 156.3 14.9 15.2 7.3 44 39 A H B > -A 63 0A 77 19,-0.2 3,-0.6 -3,-0.1 19,-0.2 -0.621 44.6 -78.9 -95.2 158.1 13.4 12.4 9.4 45 40 A S T 3 S+ 0 0 2 17,-1.6 -1,-0.1 -2,-0.2 16,-0.1 -0.377 106.2 7.5 -62.3 138.6 10.6 13.0 11.9 46 41 A G T 3 S+ 0 0 12 15,-0.1 -1,-0.2 -3,-0.1 7,-0.1 0.807 84.7 115.7 54.7 62.1 11.6 14.6 15.2 47 42 A Q < + 0 0 128 -3,-0.6 2,-0.4 2,-0.1 -2,-0.1 0.314 28.3 123.6-135.5 6.7 15.2 15.5 15.0 48 43 A A > - 0 0 11 1,-0.1 3,-1.2 -12,-0.1 2,-0.3 -0.628 66.4-120.2 -69.7 126.4 15.2 19.3 15.3 49 44 A E T 3 S+ 0 0 187 -2,-0.4 3,-0.1 1,-0.2 -1,-0.1 -0.492 92.1 27.6 -77.6 138.9 17.6 19.9 18.2 50 45 A G T 3 S+ 0 0 80 1,-0.4 2,-0.5 -2,-0.3 -1,-0.2 0.466 96.9 116.5 95.0 4.7 16.3 21.8 21.3 51 46 A Y < - 0 0 42 -3,-1.2 2,-1.1 -15,-0.0 -1,-0.4 -0.932 63.0-139.6-111.9 137.9 12.8 20.5 20.5 52 47 A S - 0 0 90 -2,-0.5 2,-0.2 -3,-0.1 -3,-0.1 -0.718 28.1-173.1 -89.8 86.3 10.9 18.2 22.8 53 48 A Y - 0 0 43 -2,-1.1 30,-0.0 -5,-0.2 -19,-0.0 -0.570 28.3-107.3 -82.0 147.2 9.1 15.7 20.5 54 49 A T > - 0 0 31 -2,-0.2 4,-1.2 1,-0.1 3,-0.2 -0.095 33.2-110.4 -59.0 169.3 6.6 13.1 21.7 55 50 A D H > S+ 0 0 138 1,-0.2 4,-1.9 2,-0.2 5,-0.2 0.907 116.1 66.3 -70.9 -40.4 7.8 9.5 21.7 56 51 A A H > S+ 0 0 23 1,-0.2 4,-1.2 26,-0.2 -1,-0.2 0.772 100.6 45.3 -42.0 -50.8 5.4 8.9 18.8 57 52 A A H > S+ 0 0 8 2,-0.2 4,-2.1 1,-0.2 3,-0.3 0.942 112.5 48.2 -64.2 -55.3 7.2 11.1 16.3 58 53 A I H < S+ 0 0 81 -4,-1.2 -2,-0.2 1,-0.2 -1,-0.2 0.841 113.1 49.7 -53.5 -45.6 10.7 10.0 17.0 59 54 A K H < S+ 0 0 172 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.755 104.1 59.2 -65.4 -36.4 9.6 6.3 16.8 60 55 A K H < S- 0 0 86 -4,-1.2 -2,-0.2 -3,-0.3 -1,-0.2 0.972 81.9-168.0 -63.5 -54.8 7.8 7.0 13.5 61 56 A N < - 0 0 84 -4,-2.1 2,-0.3 1,-0.1 -3,-0.1 0.998 12.7-171.7 57.9 65.6 11.1 8.1 11.8 62 57 A V - 0 0 6 -5,-0.3 -17,-1.6 6,-0.0 2,-0.7 -0.660 26.1-132.2 -91.4 142.5 9.5 9.6 8.7 63 58 A L B -A 44 0A 69 -2,-0.3 2,-1.2 -19,-0.2 -19,-0.2 -0.912 29.2-132.2 -98.2 107.4 11.5 10.8 5.8 64 59 A W + 0 0 15 -21,-3.9 -22,-2.7 -2,-0.7 2,-0.3 -0.625 47.5 148.4 -75.9 103.7 9.9 14.2 5.1 65 60 A D > - 0 0 52 -2,-1.2 4,-1.9 -24,-0.2 3,-0.2 -0.801 61.8-100.6-125.5 167.7 9.3 14.2 1.4 66 61 A E H > S+ 0 0 74 -2,-0.3 4,-0.9 1,-0.2 34,-0.1 0.738 120.1 51.6 -63.4 -34.9 6.4 16.0 -0.3 67 62 A N H > S+ 0 0 59 2,-0.2 4,-1.3 1,-0.2 -1,-0.2 0.892 112.2 43.2 -68.3 -49.4 4.4 12.8 -0.7 68 63 A N H > S+ 0 0 31 -3,-0.2 4,-3.2 -5,-0.2 5,-0.2 0.800 110.5 58.0 -62.6 -44.4 4.5 11.7 3.0 69 64 A M H X S+ 0 0 14 -4,-1.9 4,-2.3 1,-0.2 -1,-0.2 0.847 104.1 51.7 -57.4 -40.3 3.9 15.3 4.1 70 65 A S H X S+ 0 0 10 -4,-0.9 4,-1.5 2,-0.2 -2,-0.2 0.852 111.6 45.8 -71.2 -41.6 0.6 15.3 2.1 71 66 A E H X S+ 0 0 112 -4,-1.3 4,-1.2 2,-0.2 3,-0.4 0.947 114.0 48.9 -68.2 -44.1 -0.6 12.1 3.8 72 67 A Y H >< S+ 0 0 27 -4,-3.2 3,-0.9 1,-0.2 7,-0.2 0.961 108.5 56.4 -57.6 -46.7 0.5 13.5 7.2 73 68 A L H 3< S+ 0 0 11 -4,-2.3 17,-1.2 1,-0.3 -1,-0.2 0.769 99.6 56.8 -60.3 -29.4 -1.4 16.7 6.3 74 69 A T H 3< S- 0 0 48 -4,-1.5 -1,-0.3 -3,-0.4 -2,-0.2 0.862 134.4 -6.8 -68.1 -36.2 -4.7 15.0 5.7 75 70 A N S+ 0 0 0 0, 0.0 4,-2.9 0, 0.0 3,-0.4 0.939 87.8 46.3 -47.7 -64.9 -1.6 13.8 11.6 77 72 A X H 4 S+ 0 0 138 10,-0.4 6,-0.2 1,-0.3 11,-0.1 0.810 111.8 56.7 -54.9 -28.4 -2.6 11.6 14.5 78 73 A K H 4 S+ 0 0 167 -3,-0.4 -1,-0.3 1,-0.2 -6,-0.1 0.937 113.1 39.0 -64.8 -52.3 -3.7 9.1 11.9 79 74 A Y H < S+ 0 0 45 -4,-1.9 -2,-0.2 -3,-0.4 -1,-0.2 0.766 136.1 18.7 -65.1 -41.0 -0.2 9.1 10.5 80 75 A I S >< S- 0 0 5 -4,-2.9 3,-2.5 -5,-0.2 -1,-0.3 -0.771 84.0-154.0-139.5 79.0 1.7 9.3 13.8 81 76 A P T 3 S+ 0 0 95 0, 0.0 -3,-0.1 0, 0.0 3,-0.1 -0.412 82.5 31.2 -58.5 133.1 -0.8 8.2 16.5 82 77 A G T 3 S+ 0 0 56 1,-0.4 -26,-0.2 3,-0.1 -27,-0.1 0.200 85.4 145.9 100.8 -10.4 0.2 9.8 19.8 83 78 A T < - 0 0 10 -3,-2.5 -1,-0.4 -6,-0.2 -6,-0.1 -0.271 50.8-140.6 -57.4 141.7 1.6 12.9 18.1 84 79 A K + 0 0 103 -3,-0.1 2,-0.7 2,-0.1 -1,-0.1 0.409 65.3 120.8 -89.0 11.4 1.1 16.1 20.0 85 80 A M - 0 0 42 1,-0.1 2,-1.1 2,-0.1 -8,-0.2 -0.704 52.1-158.3 -73.0 113.4 0.4 17.9 16.8 86 81 A A + 0 0 88 -2,-0.7 2,-0.4 -10,-0.1 -1,-0.1 -0.579 46.0 122.1 -98.1 69.5 -3.2 19.3 17.4 87 82 A F - 0 0 34 -2,-1.1 -10,-0.4 1,-0.2 3,-0.1 -0.980 53.2-149.8-128.0 127.7 -4.3 19.8 13.8 88 83 A G - 0 0 58 -2,-0.4 2,-0.3 1,-0.2 -1,-0.2 0.989 49.7-115.3 -62.4 -56.7 -7.4 18.2 12.2 89 84 A G - 0 0 7 -14,-0.2 2,-0.4 -13,-0.1 -15,-0.3 -0.940 16.0 -83.6 151.3-170.7 -6.0 18.1 8.7 90 85 A L - 0 0 3 -17,-1.2 6,-0.1 -2,-0.3 -15,-0.0 -0.952 32.2-172.6-129.3 99.4 -6.4 19.4 5.2 91 86 A K + 0 0 143 -2,-0.4 2,-0.6 1,-0.0 -1,-0.1 0.812 64.2 84.5 -68.6 -29.4 -9.1 17.3 3.4 92 87 A K > - 0 0 97 1,-0.2 4,-2.9 2,-0.0 3,-0.5 -0.626 61.9-160.6 -86.8 119.7 -8.4 19.0 0.1 93 88 A E H > S+ 0 0 116 -2,-0.6 4,-3.0 1,-0.3 -1,-0.2 0.904 97.0 59.8 -57.0 -35.1 -5.6 17.7 -1.9 94 89 A K H > S+ 0 0 152 2,-0.2 4,-1.3 1,-0.2 -1,-0.3 0.802 108.1 42.9 -66.6 -36.3 -5.8 21.1 -3.7 95 90 A D H > S+ 0 0 42 -3,-0.5 4,-2.1 2,-0.2 -1,-0.2 0.851 114.8 50.2 -76.4 -38.0 -5.1 22.9 -0.4 96 91 A R H X S+ 0 0 35 -4,-2.9 4,-2.8 1,-0.2 5,-0.4 0.914 107.9 53.6 -61.7 -42.5 -2.4 20.5 0.6 97 92 A N H X S+ 0 0 17 -4,-3.0 4,-1.3 1,-0.2 -91,-0.8 0.875 108.5 49.1 -58.7 -44.0 -0.7 20.8 -2.8 98 93 A D H X S+ 0 0 23 -4,-1.3 4,-2.6 1,-0.2 -87,-0.3 0.904 112.7 49.1 -58.5 -46.1 -0.5 24.6 -2.5 99 94 A L H X S+ 0 0 2 -4,-2.1 4,-3.5 2,-0.2 -2,-0.2 0.909 108.0 48.8 -62.8 -51.0 0.9 24.2 1.0 100 95 A I H X S+ 0 0 0 -4,-2.8 4,-4.4 2,-0.2 5,-0.4 0.801 110.5 56.4 -57.2 -30.5 3.7 21.7 0.3 101 96 A T H X S+ 0 0 5 -4,-1.3 4,-2.3 -5,-0.4 -2,-0.2 0.988 110.3 42.1 -64.3 -56.9 4.6 24.0 -2.6 102 97 A Y H X S+ 0 0 44 -4,-2.6 4,-4.3 -95,-0.4 -2,-0.2 0.899 118.3 47.8 -54.9 -47.5 5.0 26.9 -0.2 103 98 A L H X S+ 0 0 9 -4,-3.5 4,-2.3 2,-0.2 -2,-0.2 0.954 108.2 52.1 -59.8 -54.7 6.8 24.6 2.2 104 99 A K H < S+ 0 0 69 -4,-4.4 -1,-0.2 1,-0.2 -2,-0.2 0.882 119.0 41.1 -43.8 -47.3 9.1 23.1 -0.4 105 100 A K H >< S+ 0 0 128 -4,-2.3 3,-0.8 -5,-0.4 -2,-0.2 0.958 117.5 41.4 -70.6 -54.3 10.0 26.6 -1.3 106 101 A A H 3< S+ 0 0 33 -4,-4.3 -2,-0.2 1,-0.2 -3,-0.2 0.607 112.0 49.8 -81.3 -14.6 10.2 28.4 2.0 107 102 A T T 3< 0 0 1 -4,-2.3 -68,-2.3 -5,-0.1 -1,-0.2 -0.046 360.0 360.0-101.7 15.2 12.1 25.9 4.2 108 103 A E < 0 0 177 -3,-0.8 -2,-0.2 -70,-0.1 -1,-0.1 0.844 360.0 360.0 -92.3 360.0 14.7 25.4 1.6