==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 29-DEC-01 1IT1 . COMPND 2 MOLECULE: CYTOCHROME C3; . SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS STR. 'MIYAZAKI . AUTHOR E.HARADA,Y.FUKUOKA,T.OHMURA,A.FUKUNISHI,G.KAWAI,T.FUJIWARA, . 107 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7401.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 57.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 7 6.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 17 15.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 13.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 15.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 140 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 138.2 19.9 13.0 1.9 2 2 A P - 0 0 66 0, 0.0 2,-1.0 0, 0.0 0, 0.0 -0.425 360.0-134.1 -73.0 146.2 16.5 12.2 3.5 3 3 A K - 0 0 194 -2,-0.1 0, 0.0 40,-0.1 0, 0.0 -0.719 23.0-136.7-104.6 87.0 16.6 10.7 7.0 4 4 A A - 0 0 72 -2,-1.0 3,-0.1 1,-0.1 2,-0.0 -0.051 24.8-116.2 -39.9 137.6 14.1 7.8 6.8 5 5 A P - 0 0 66 0, 0.0 17,-0.2 0, 0.0 4,-0.1 -0.294 40.0 -78.5 -76.7 163.3 11.9 7.8 9.9 6 6 A A - 0 0 85 1,-0.1 16,-0.2 2,-0.1 3,-0.1 -0.263 57.6 -95.3 -61.3 148.3 11.9 5.0 12.5 7 7 A D S S+ 0 0 69 1,-0.2 14,-0.3 14,-0.2 -1,-0.1 -0.134 101.3 67.8 -58.6 161.4 10.0 1.9 11.5 8 8 A G + 0 0 36 12,-0.7 2,-0.3 1,-0.2 13,-0.2 0.661 60.8 170.0 98.5 19.6 6.4 1.6 12.8 9 9 A L E -A 20 0A 45 11,-2.4 11,-4.8 10,-0.1 2,-0.8 -0.469 27.0-142.0 -65.5 123.1 5.0 4.5 10.8 10 10 A K E -A 19 0A 142 -2,-0.3 2,-1.2 9,-0.3 9,-0.3 -0.769 7.6-157.1 -93.5 113.7 1.2 4.4 11.2 11 11 A M E +A 18 0A 25 7,-5.0 7,-2.5 -2,-0.8 3,-0.3 -0.697 30.0 154.7 -87.1 95.4 -0.7 5.2 8.0 12 12 A D + 0 0 96 -2,-1.2 -1,-0.2 5,-0.3 7,-0.1 0.160 29.1 119.8-108.5 20.0 -4.1 6.3 9.4 13 13 A K S S+ 0 0 57 5,-0.1 -1,-0.2 3,-0.1 2,-0.2 0.834 82.1 33.0 -53.4 -29.3 -5.1 8.5 6.5 14 14 A T S S- 0 0 40 -3,-0.3 41,-0.0 2,-0.1 4,-0.0 -0.482 104.0 -89.5-115.5-170.9 -8.1 6.2 6.1 15 15 A K S S+ 0 0 190 1,-0.2 -2,-0.0 -2,-0.2 -1,-0.0 0.810 119.0 61.8 -72.5 -26.5 -10.3 4.2 8.4 16 16 A Q S S- 0 0 120 2,-0.0 -1,-0.2 90,-0.0 -2,-0.1 -0.711 81.7-162.0-102.7 84.4 -8.0 1.2 8.1 17 17 A P - 0 0 72 0, 0.0 2,-0.4 0, 0.0 -5,-0.3 -0.391 4.9-164.4 -66.5 136.3 -4.7 2.6 9.5 18 18 A V E -A 11 0A 19 -7,-2.5 -7,-5.0 -2,-0.1 2,-0.6 -0.976 16.2-132.2-126.4 136.1 -1.6 0.5 8.5 19 19 A V E -A 10 0A 66 -2,-0.4 2,-0.6 -9,-0.3 -9,-0.3 -0.739 19.3-155.0 -88.4 120.6 1.9 0.7 10.2 20 20 A F E -A 9 0A 52 -11,-4.8 -11,-2.4 -2,-0.6 2,-0.9 -0.814 1.1-158.4 -96.7 125.0 4.7 1.0 7.6 21 21 A N > - 0 0 56 -2,-0.6 3,-1.9 -14,-0.3 4,-0.4 -0.801 6.0-165.4-103.6 98.4 8.1 -0.2 8.8 22 22 A H G >> S+ 0 0 28 -2,-0.9 3,-3.1 1,-0.3 4,-2.7 0.874 87.2 72.1 -49.2 -34.0 10.8 1.4 6.6 23 23 A S G 34 S+ 0 0 49 1,-0.3 4,-0.4 2,-0.3 -1,-0.3 0.916 97.4 47.4 -49.3 -42.9 13.1 -1.3 8.1 24 24 A T G <4 S+ 0 0 97 -3,-1.9 -1,-0.3 1,-0.2 -2,-0.2 0.502 122.0 38.1 -77.4 -0.4 11.3 -3.8 5.9 25 25 A H T X4 S+ 0 0 42 -3,-3.1 3,-3.9 -4,-0.4 -2,-0.3 0.478 81.8 98.2-125.3 -9.7 11.7 -1.4 3.0 26 26 A K T 3< S+ 0 0 151 -4,-2.7 4,-0.2 1,-0.3 -3,-0.1 0.850 88.9 53.0 -50.0 -29.6 15.2 0.0 3.7 27 27 A A T 3 S+ 0 0 100 -4,-0.4 -1,-0.3 -5,-0.2 -2,-0.1 0.540 97.8 87.7 -83.7 -3.9 16.3 -2.5 1.0 28 28 A V S < S- 0 0 44 -3,-3.9 2,-1.0 -6,-0.2 3,-0.1 -0.308 97.9 -87.8 -85.3 175.8 13.7 -1.1 -1.4 29 29 A K >> - 0 0 142 1,-0.2 3,-4.2 -2,-0.1 4,-1.5 -0.722 27.1-152.5 -89.3 105.7 14.3 1.8 -3.7 30 30 A C H 3> S+ 0 0 76 -2,-1.0 4,-1.5 1,-0.3 -1,-0.2 0.797 102.3 52.8 -45.9 -24.2 13.5 5.0 -1.8 31 31 A G H 34 S+ 0 0 18 2,-0.2 -1,-0.3 1,-0.2 11,-0.1 0.625 98.6 63.2 -88.8 -11.9 12.8 6.3 -5.3 32 32 A D H <4 S+ 0 0 31 -3,-4.2 3,-0.3 2,-0.1 -2,-0.2 0.885 118.4 25.4 -79.5 -34.8 10.4 3.5 -6.0 33 33 A C H < S+ 0 0 51 -4,-1.5 2,-0.9 1,-0.2 -2,-0.2 0.918 135.2 34.2 -90.2 -57.8 8.0 4.6 -3.2 34 34 A H S < S- 0 0 32 -4,-1.5 3,-0.3 -5,-0.3 -1,-0.2 -0.212 94.8-173.2 -88.2 46.0 8.9 8.3 -3.0 35 35 A H - 0 0 40 -2,-0.9 7,-0.8 -3,-0.3 2,-0.6 0.170 42.4 -68.9 -35.0 163.8 9.4 8.3 -6.8 36 36 A P E +B 41 0B 78 0, 0.0 5,-0.3 0, 0.0 2,-0.3 -0.464 67.2 170.1 -65.3 110.4 10.9 11.5 -8.3 37 37 A V E > +B 40 0B 45 3,-1.6 3,-4.7 -2,-0.6 -3,-0.0 -0.868 61.7 7.8-120.7 156.5 8.1 14.1 -8.0 38 38 A N T 3 S- 0 0 138 1,-0.3 -1,-0.2 -2,-0.3 3,-0.1 0.786 137.8 -55.5 47.8 21.8 8.3 17.9 -8.6 39 39 A G T 3 S+ 0 0 82 -3,-0.1 2,-0.3 1,-0.1 -1,-0.3 0.326 135.1 66.7 93.4 -10.4 11.8 17.1 -9.9 40 40 A K E < S-B 37 0B 134 -3,-4.7 -3,-1.6 -5,-0.1 2,-0.5 -0.999 94.1-101.5-144.7 142.2 12.7 15.4 -6.6 41 41 A E E -B 36 0B 52 -2,-0.3 2,-1.1 -5,-0.3 -6,-0.2 -0.436 38.8-130.3 -62.6 112.1 11.5 12.3 -4.8 42 42 A D - 0 0 30 -7,-0.8 2,-2.0 -2,-0.5 -1,-0.1 -0.466 18.8-162.6 -66.3 100.4 9.1 13.6 -2.2 43 43 A Y + 0 0 109 -2,-1.1 2,-0.3 -9,-0.0 -1,-0.1 -0.232 54.2 104.3 -80.1 52.8 10.4 11.8 0.9 44 44 A Q S S- 0 0 78 -2,-2.0 4,-0.2 1,-0.2 -2,-0.0 -0.830 86.1 -55.1-128.4 168.6 7.2 12.4 2.8 45 45 A K > - 0 0 109 -2,-0.3 3,-1.1 1,-0.1 7,-0.2 -0.054 52.9-122.0 -41.0 138.0 4.2 10.4 3.9 46 46 A C T 3 S+ 0 0 39 1,-0.3 2,-0.9 5,-0.1 6,-0.7 0.918 112.1 50.7 -53.8 -44.2 2.6 8.9 0.7 47 47 A A T 3 S+ 0 0 0 5,-0.2 -1,-0.3 4,-0.2 3,-0.2 -0.222 86.0 175.5 -89.6 48.7 -0.7 10.6 1.4 48 48 A T X - 0 0 24 -3,-1.1 2,-4.1 -2,-0.9 3,-2.0 0.093 56.4 -72.3 -45.4 168.7 0.9 14.0 1.9 49 49 A A T 3 S+ 0 0 102 1,-0.3 -1,-0.2 2,-0.1 -2,-0.1 -0.233 132.4 5.4 -65.7 63.8 -1.5 16.9 2.4 50 50 A G T 3 S+ 0 0 57 -2,-4.1 -1,-0.3 -3,-0.2 -2,-0.1 0.551 117.4 82.5 130.1 29.5 -2.6 16.8 -1.2 51 51 A C S < S- 0 0 37 -3,-2.0 -4,-0.2 -4,-0.1 3,-0.1 0.572 112.0 -16.9-121.0 -80.7 -0.8 13.7 -2.6 52 52 A H S S+ 0 0 21 -6,-0.7 -5,-0.2 -4,-0.2 13,-0.2 0.006 98.6 112.0-119.2 26.8 -2.5 10.3 -1.9 53 53 A D + 0 0 60 -5,-0.5 2,-0.8 -7,-0.2 -1,-0.1 0.101 37.2 133.5 -87.9 26.5 -4.8 11.5 0.9 54 54 A N > - 0 0 23 9,-0.2 3,-0.9 1,-0.1 12,-0.6 -0.651 40.2-166.0 -80.0 112.6 -7.9 11.0 -1.3 55 55 A M T 3 + 0 0 79 -2,-0.8 -1,-0.1 1,-0.2 -40,-0.1 0.223 66.6 99.1 -83.6 19.8 -10.4 9.1 0.9 56 56 A D T 3 S- 0 0 98 1,-0.1 -1,-0.2 3,-0.0 8,-0.1 0.657 70.7-155.4 -79.3 -12.3 -12.5 8.3 -2.2 57 57 A K S < S+ 0 0 124 -3,-0.9 -2,-0.1 1,-0.2 -1,-0.1 0.788 82.8 69.6 44.5 24.0 -10.9 4.8 -2.2 58 58 A K + 0 0 140 -4,-0.1 2,-0.4 8,-0.0 -1,-0.2 0.508 55.0 117.2-139.0 -26.7 -11.8 4.9 -5.9 59 59 A D - 0 0 33 1,-0.2 8,-0.4 4,-0.1 5,-0.2 -0.263 42.7-169.4 -51.1 103.5 -9.5 7.5 -7.5 60 60 A K + 0 0 150 -2,-0.4 -1,-0.2 7,-0.1 2,-0.1 0.035 57.9 87.9 -87.1 31.6 -7.6 5.3 -9.9 61 61 A S S > S- 0 0 74 13,-0.0 3,-0.6 0, 0.0 7,-0.4 -0.273 101.2 -81.2-111.0-160.1 -5.2 8.1 -10.7 62 62 A A T 3 S+ 0 0 79 1,-0.2 -2,-0.1 -2,-0.1 -3,-0.0 0.043 119.1 61.7 -95.0 28.9 -1.9 9.3 -9.1 63 63 A K T 3 S+ 0 0 128 -4,-0.1 2,-0.5 -11,-0.1 -9,-0.2 0.098 79.9 92.5-138.6 24.2 -3.7 11.2 -6.3 64 64 A G <> - 0 0 0 -3,-0.6 4,-1.2 1,-0.2 5,-0.4 -0.970 61.4-146.6-125.5 128.5 -5.7 8.5 -4.4 65 65 A Y H > S+ 0 0 10 -11,-0.5 4,-1.7 -2,-0.5 5,-0.3 0.983 99.8 47.5 -51.7 -66.4 -4.4 6.6 -1.4 66 66 A Y H >>>S+ 0 0 107 -12,-0.6 4,-3.7 2,-0.2 3,-0.9 0.921 110.6 51.0 -40.1 -67.7 -6.3 3.4 -2.2 67 67 A H H >>5S+ 0 0 19 -8,-0.4 4,-4.1 1,-0.3 3,-0.8 0.917 113.9 39.8 -39.2 -80.3 -5.2 3.3 -5.9 68 68 A A H 3<5S+ 0 0 16 -4,-1.2 11,-1.1 -7,-0.4 13,-0.3 0.763 122.7 48.1 -45.6 -23.3 -1.4 3.7 -5.5 69 69 A M H <<5S+ 0 0 18 -4,-1.7 11,-3.1 -3,-0.9 12,-0.3 0.832 126.6 21.6 -90.5 -34.3 -1.8 1.4 -2.4 70 70 A H H <<5S+ 0 0 59 -4,-3.7 -3,-0.2 -3,-0.8 -2,-0.2 0.574 107.0 88.7-109.2 -11.2 -3.9 -1.4 -3.9 71 71 A D << - 0 0 24 -4,-4.1 10,-0.6 -5,-0.6 7,-0.3 -0.469 50.6-169.9 -84.5 159.5 -3.0 -0.9 -7.6 72 72 A K S S+ 0 0 120 9,-0.1 2,-4.1 1,-0.1 6,-0.4 0.754 76.3 63.3-113.5 -56.7 -0.1 -2.6 -9.3 73 73 A G S S+ 0 0 85 4,-0.1 2,-0.2 2,-0.0 -1,-0.1 -0.204 80.8 139.2 -67.9 59.1 0.4 -1.1 -12.8 74 74 A T S S- 0 0 23 -2,-4.1 -12,-0.0 2,-0.4 4,-0.0 -0.675 77.3 -92.5-103.7 161.1 1.1 2.3 -11.2 75 75 A K S S+ 0 0 171 -2,-0.2 2,-0.3 2,-0.1 -1,-0.1 0.832 115.2 9.0 -38.9 -32.0 3.7 4.9 -12.1 76 76 A F S S- 0 0 57 -41,-0.1 2,-0.6 -43,-0.0 -2,-0.4 -0.886 107.5 -67.1-141.3 174.3 5.8 3.0 -9.6 77 77 A K - 0 0 83 -2,-0.3 -5,-0.1 -4,-0.1 -4,-0.1 -0.511 59.9-154.1 -68.9 113.8 5.6 -0.2 -7.5 78 78 A S > - 0 0 13 -2,-0.6 4,-2.8 -6,-0.4 5,-0.2 -0.111 27.6 -93.0 -79.1-178.0 2.8 0.5 -5.1 79 79 A C H > S+ 0 0 39 -11,-1.1 4,-1.4 2,-0.2 -9,-0.2 0.999 126.7 23.0 -62.2 -69.0 2.2 -1.0 -1.7 80 80 A V H > S+ 0 0 24 -11,-3.1 4,-3.2 1,-0.2 5,-0.3 0.839 124.1 58.8 -67.9 -28.8 -0.0 -3.9 -2.7 81 81 A G H > S+ 0 0 4 -10,-0.6 4,-0.8 -13,-0.3 -1,-0.2 0.932 110.8 39.7 -67.0 -42.0 1.5 -3.7 -6.2 82 82 A C H X S+ 0 0 23 -4,-2.8 4,-2.3 2,-0.2 -1,-0.2 0.732 117.3 54.6 -77.8 -19.1 5.0 -4.3 -4.8 83 83 A H H X S+ 0 0 25 -4,-1.4 4,-1.4 -5,-0.2 15,-0.2 0.974 103.3 49.0 -77.9 -59.8 3.5 -6.8 -2.4 84 84 A L H < S+ 0 0 57 -4,-3.2 4,-0.4 1,-0.2 5,-0.4 0.820 122.6 39.5 -50.7 -26.5 1.7 -9.1 -4.9 85 85 A E H >< S+ 0 0 156 -4,-0.8 3,-0.8 -5,-0.3 -1,-0.2 0.859 108.9 56.8 -91.7 -40.5 5.0 -9.0 -6.8 86 86 A T H 3< S+ 0 0 83 -4,-2.3 -2,-0.2 1,-0.2 -3,-0.2 0.621 102.8 61.8 -66.7 -6.7 7.4 -9.2 -3.8 87 87 A A T 3< S- 0 0 6 -4,-1.4 -1,-0.2 6,-0.1 6,-0.2 0.811 87.4-156.2 -88.5 -31.5 5.5 -12.4 -2.9 88 88 A G S < S- 0 0 56 -3,-0.8 -3,-0.1 -4,-0.4 5,-0.1 0.985 72.8 -42.0 53.8 73.3 6.4 -14.3 -6.1 89 89 A A S S+ 0 0 98 -5,-0.4 2,-0.4 1,-0.2 -1,-0.2 0.917 101.2 143.8 39.7 57.3 3.5 -16.8 -6.2 90 90 A D >> - 0 0 42 -6,-0.2 4,-3.9 1,-0.1 3,-1.1 -0.744 40.7-163.1-127.9 85.5 3.8 -17.3 -2.4 91 91 A A H 3> S+ 0 0 84 -2,-0.4 4,-1.1 1,-0.3 -1,-0.1 0.795 97.2 53.6 -38.1 -28.4 0.4 -17.8 -0.8 92 92 A A H 3> S+ 0 0 51 2,-0.2 4,-0.8 1,-0.2 -1,-0.3 0.937 115.9 35.5 -75.6 -44.8 2.3 -17.0 2.4 93 93 A K H <>>S+ 0 0 83 -3,-1.1 4,-3.1 -6,-0.2 5,-0.7 0.794 115.9 56.6 -78.0 -26.2 3.7 -13.7 1.0 94 94 A K H <5S+ 0 0 94 -4,-3.9 5,-0.4 1,-0.2 4,-0.3 0.809 108.5 47.1 -75.2 -25.9 0.5 -13.1 -0.9 95 95 A K H <5S+ 0 0 123 -4,-1.1 -1,-0.2 -5,-0.5 -2,-0.2 0.704 121.6 36.9 -86.1 -19.1 -1.5 -13.3 2.3 96 96 A E H <5S+ 0 0 48 -4,-0.8 8,-2.5 7,-0.3 9,-1.0 0.830 127.2 33.1 -97.8 -43.6 1.0 -11.0 4.1 97 97 A L T <5S+ 0 0 15 -4,-3.1 -13,-0.2 6,-0.2 -3,-0.2 0.967 141.3 13.8 -79.0 -57.9 1.9 -8.6 1.3 98 98 A T S S+ 0 0 152 -8,-2.5 3,-0.6 -2,-0.1 -85,-0.3 0.669 119.6 56.5-101.9 -25.8 0.9 -7.5 7.5 105 105 A C T 3 S+ 0 0 32 -9,-1.0 2,-0.1 -6,-0.3 -86,-0.1 0.766 115.1 37.0 -79.1 -25.2 -0.5 -4.4 6.0 106 106 A H T 3 0 0 36 -7,-0.4 -3,-0.3 -10,-0.2 -1,-0.2 -0.441 360.0 360.0-124.7 61.6 -4.0 -4.9 7.6 107 107 A S < 0 0 160 -3,-0.6 -3,-0.1 -2,-0.1 -6,-0.1 -0.335 360.0 360.0 -55.7 360.0 -3.3 -6.4 11.1