==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 15-FEB-02 1ITY . COMPND 2 MOLECULE: TRF1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.NISHIKAWA,H.OKAMURA,A.NAGADOI,P.KONIG,D.RHODES, . 67 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5893.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 33 49.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 41.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 373 A E > 0 0 145 0, 0.0 2,-2.5 0, 0.0 3,-1.7 0.000 360.0 360.0 360.0 -54.3 -35.1 9.0 -4.1 2 374 A K T 3 + 0 0 111 1,-0.3 7,-0.1 2,-0.1 0, 0.0 -0.427 360.0 36.2 -69.8 71.3 -33.8 5.4 -4.6 3 375 A H T 3 S- 0 0 77 -2,-2.5 -1,-0.3 5,-0.0 3,-0.1 0.011 84.8-150.7 172.9 -35.5 -34.9 4.4 -1.0 4 376 A R < + 0 0 241 -3,-1.7 2,-0.3 1,-0.1 -2,-0.1 0.814 66.7 88.7 42.9 44.1 -38.2 6.4 -0.6 5 377 A A S S- 0 0 68 2,-0.1 -1,-0.1 -4,-0.0 2,-0.0 -0.970 84.4 -82.5-158.7 160.3 -37.5 6.5 3.2 6 378 A R S S+ 0 0 228 -2,-0.3 0, 0.0 -3,-0.1 0, 0.0 -0.247 90.2 44.7 -67.4 156.5 -35.7 8.7 5.8 7 379 A K S S- 0 0 142 2,-0.1 -2,-0.1 1,-0.0 2,-0.1 0.773 91.5 -95.3 74.2 118.6 -31.9 8.5 6.5 8 380 A R - 0 0 159 1,-0.1 -2,-0.1 -5,-0.0 -5,-0.0 -0.373 42.9-117.6 -63.2 133.4 -29.5 8.3 3.5 9 381 A Q - 0 0 122 -7,-0.1 -1,-0.1 1,-0.1 -2,-0.1 -0.246 31.6-103.2 -68.1 159.4 -28.5 4.7 2.6 10 382 A A - 0 0 72 1,-0.1 -1,-0.1 0, 0.0 2,-0.1 -0.159 43.5 -83.2 -75.8 174.2 -24.8 3.6 2.8 11 383 A W - 0 0 29 1,-0.1 2,-0.3 2,-0.0 -1,-0.1 -0.410 46.5-106.6 -78.1 156.3 -22.4 3.1 -0.1 12 384 A L > - 0 0 77 -2,-0.1 4,-2.7 1,-0.1 5,-0.2 -0.620 20.5-120.6 -87.6 146.0 -22.4 -0.1 -2.2 13 385 A W H > S+ 0 0 170 -2,-0.3 4,-2.3 1,-0.2 5,-0.1 0.877 114.8 48.8 -45.1 -52.8 -19.6 -2.7 -1.9 14 386 A E H > S+ 0 0 57 2,-0.2 4,-2.7 1,-0.2 -1,-0.2 0.880 111.3 49.4 -60.0 -43.6 -18.7 -2.2 -5.6 15 387 A E H > S+ 0 0 0 2,-0.2 4,-2.8 -3,-0.2 -2,-0.2 0.911 109.8 50.8 -66.0 -43.8 -18.6 1.6 -5.4 16 388 A D H X S+ 0 0 32 -4,-2.7 4,-2.8 2,-0.2 -2,-0.2 0.930 113.2 46.3 -60.1 -44.4 -16.4 1.5 -2.3 17 389 A K H X S+ 0 0 109 -4,-2.3 4,-3.0 -5,-0.2 5,-0.3 0.945 111.8 51.3 -60.9 -49.6 -14.0 -0.9 -4.2 18 390 A N H X S+ 0 0 24 -4,-2.7 4,-2.5 1,-0.2 -2,-0.2 0.919 114.3 43.6 -51.4 -51.4 -14.1 1.4 -7.3 19 391 A L H X S+ 0 0 0 -4,-2.8 4,-2.9 2,-0.2 5,-0.3 0.921 113.9 50.1 -61.9 -49.4 -13.3 4.4 -5.2 20 392 A R H X S+ 0 0 108 -4,-2.8 4,-2.3 1,-0.2 -2,-0.2 0.953 116.3 40.8 -54.9 -56.1 -10.5 2.6 -3.2 21 393 A S H X S+ 0 0 50 -4,-3.0 4,-2.5 2,-0.2 -1,-0.2 0.885 113.8 56.6 -59.9 -41.1 -8.8 1.3 -6.3 22 394 A G H X S+ 0 0 0 -4,-2.5 4,-3.0 -5,-0.3 5,-0.3 0.944 109.7 42.4 -55.9 -55.8 -9.4 4.7 -8.0 23 395 A V H X S+ 0 0 14 -4,-2.9 4,-1.7 1,-0.2 -1,-0.2 0.891 115.9 50.3 -61.2 -41.0 -7.6 6.7 -5.3 24 396 A R H < S+ 0 0 226 -4,-2.3 -1,-0.2 -5,-0.3 -2,-0.2 0.870 118.0 39.4 -64.5 -37.5 -4.8 4.1 -5.2 25 397 A K H < S+ 0 0 152 -4,-2.5 -2,-0.2 -5,-0.2 -1,-0.2 0.851 133.1 20.2 -79.7 -42.4 -4.4 4.2 -9.0 26 398 A Y H < S- 0 0 86 -4,-3.0 -3,-0.2 1,-0.3 -2,-0.2 0.282 105.3-119.8-114.5 5.6 -4.8 8.0 -9.7 27 399 A G < - 0 0 35 -4,-1.7 -1,-0.3 -5,-0.3 3,-0.3 -0.122 41.7 -59.4 78.2 178.9 -4.1 9.5 -6.3 28 400 A E S S+ 0 0 99 1,-0.2 0, 0.0 -4,-0.1 0, 0.0 -0.403 107.6 43.8 -91.8 170.5 -6.5 11.6 -4.2 29 401 A G S S+ 0 0 59 -2,-0.1 -1,-0.2 1,-0.1 3,-0.1 0.817 85.1 96.4 63.3 37.1 -8.1 15.0 -5.0 30 402 A N > + 0 0 33 -3,-0.3 4,-2.4 1,-0.1 3,-0.2 -0.341 35.6 153.7-149.1 53.9 -9.1 14.0 -8.6 31 403 A W H > S+ 0 0 30 1,-0.2 4,-2.9 2,-0.2 5,-0.2 0.814 72.0 58.1 -54.9 -38.1 -12.7 12.9 -8.1 32 404 A S H > S+ 0 0 74 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.945 109.3 44.2 -60.3 -49.9 -13.6 13.8 -11.8 33 405 A K H > S+ 0 0 119 -3,-0.2 4,-2.9 2,-0.2 3,-0.5 0.967 115.6 47.0 -58.2 -56.8 -10.9 11.4 -13.1 34 406 A I H X S+ 0 0 0 -4,-2.4 4,-2.7 1,-0.2 -2,-0.2 0.906 112.1 51.2 -50.7 -49.9 -11.9 8.6 -10.6 35 407 A L H < S+ 0 0 54 -4,-2.9 5,-0.4 1,-0.2 -1,-0.2 0.820 114.7 43.3 -58.1 -37.6 -15.6 9.1 -11.5 36 408 A L H < S+ 0 0 135 -4,-1.9 -2,-0.2 -3,-0.5 -1,-0.2 0.892 115.9 47.3 -77.0 -43.2 -14.8 8.8 -15.2 37 409 A H H < S+ 0 0 100 -4,-2.9 2,-0.3 -5,-0.2 -2,-0.2 0.957 112.0 49.3 -63.7 -56.4 -12.4 5.8 -14.9 38 410 A Y S < S- 0 0 67 -4,-2.7 2,-1.0 -5,-0.2 -23,-0.0 -0.686 86.7-122.0 -92.3 142.4 -14.6 3.6 -12.6 39 411 A K - 0 0 162 -2,-0.3 2,-0.2 2,-0.0 -21,-0.1 -0.715 34.4-175.1 -86.3 97.7 -18.3 2.9 -13.4 40 412 A F - 0 0 9 -2,-1.0 3,-0.1 -5,-0.4 -25,-0.0 -0.561 26.0-132.9 -88.8 154.8 -20.3 4.1 -10.3 41 413 A N S S- 0 0 96 -2,-0.2 -1,-0.1 1,-0.2 2,-0.0 0.981 87.5 -19.6 -73.3 -58.6 -24.0 3.5 -10.1 42 414 A N S S+ 0 0 85 2,-0.1 2,-0.3 0, 0.0 -1,-0.2 -0.499 96.2 129.0-154.7 73.8 -25.2 7.0 -9.1 43 415 A R - 0 0 50 -8,-0.1 2,-0.3 -3,-0.1 -3,-0.1 -0.821 34.1-157.5-127.7 165.3 -22.4 9.1 -7.6 44 416 A T > - 0 0 58 -2,-0.3 4,-2.7 1,-0.0 5,-0.2 -0.867 40.8 -98.2-135.7 166.1 -20.8 12.5 -8.1 45 417 A S H > S+ 0 0 53 -2,-0.3 4,-2.6 1,-0.2 5,-0.1 0.871 126.3 53.6 -54.1 -38.9 -17.4 14.1 -7.4 46 418 A V H > S+ 0 0 98 2,-0.2 4,-2.9 1,-0.2 -1,-0.2 0.943 109.4 45.3 -62.4 -52.5 -19.1 15.6 -4.2 47 419 A M H > S+ 0 0 51 2,-0.2 4,-2.9 1,-0.2 -2,-0.2 0.880 113.1 51.5 -61.8 -37.8 -20.3 12.1 -3.0 48 420 A L H X S+ 0 0 0 -4,-2.7 4,-2.8 2,-0.2 5,-0.2 0.950 112.7 45.4 -61.5 -49.8 -16.8 10.6 -3.8 49 421 A K H X S+ 0 0 110 -4,-2.6 4,-2.7 2,-0.2 5,-0.2 0.931 115.0 48.0 -57.2 -51.5 -15.1 13.4 -1.8 50 422 A D H X S+ 0 0 48 -4,-2.9 4,-2.8 2,-0.2 5,-0.3 0.956 114.3 45.9 -53.2 -59.8 -17.6 13.0 1.1 51 423 A R H X S+ 0 0 60 -4,-2.9 4,-2.6 1,-0.2 -2,-0.2 0.915 115.7 44.2 -52.6 -54.8 -17.2 9.2 1.2 52 424 A W H X S+ 0 0 16 -4,-2.8 4,-3.0 2,-0.2 5,-0.3 0.908 114.7 48.5 -62.1 -44.4 -13.4 9.2 1.0 53 425 A R H X S+ 0 0 188 -4,-2.7 4,-2.0 -5,-0.2 5,-0.3 0.949 115.4 44.7 -59.7 -49.8 -13.0 12.0 3.6 54 426 A T H X>S+ 0 0 49 -4,-2.8 4,-2.6 -5,-0.2 5,-1.4 0.878 116.2 48.7 -60.1 -41.7 -15.4 10.3 6.0 55 427 A M H <5S+ 0 0 21 -4,-2.6 6,-0.2 -5,-0.3 -2,-0.2 0.970 113.4 42.5 -65.6 -58.3 -13.8 6.9 5.4 56 428 A K H <5S+ 0 0 93 -4,-3.0 6,-0.2 4,-0.2 -1,-0.2 0.823 124.3 38.5 -60.8 -33.3 -10.1 7.9 5.8 57 429 A K H <5S+ 0 0 149 -4,-2.0 3,-0.2 -5,-0.3 -2,-0.2 0.930 136.7 10.6 -82.9 -53.2 -11.0 10.1 8.9 58 430 A L T <5S+ 0 0 112 -4,-2.6 2,-0.6 -5,-0.3 -3,-0.2 0.872 128.0 49.5 -97.4 -48.6 -13.7 8.0 10.7 59 431 A K S