==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER NEUROPEPTIDE 18-FEB-02 1IU0 . COMPND 2 MOLECULE: PSD-95; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR J.-F.LONG,H.TOCHIO,P.WANG,C.SALA,M.NIETHAMMER,M.SHENG, . 91 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5316.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 62.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 24.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 11.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 113 0, 0.0 2,-0.3 0, 0.0 90,-0.3 0.000 360.0 360.0 360.0 119.5 132.9 15.4 -5.0 2 2 A E E -A 90 0A 110 88,-2.6 88,-2.2 1,-0.0 2,-0.5 -0.661 360.0-142.6 -86.8 137.8 133.7 15.5 -1.2 3 3 A Y E +A 89 0A 115 -2,-0.3 2,-0.3 86,-0.2 86,-0.2 -0.893 23.8 174.9-105.7 122.6 136.0 12.9 0.3 4 4 A E E -A 88 0A 67 84,-1.5 84,-2.1 -2,-0.5 2,-0.3 -0.933 22.1-134.3-126.9 150.1 135.2 11.5 3.7 5 5 A E E -A 87 0A 59 -2,-0.3 2,-0.4 82,-0.2 82,-0.2 -0.792 13.0-164.5-104.0 145.3 136.8 8.8 5.9 6 6 A I E -A 86 0A 1 80,-2.3 80,-3.0 -2,-0.3 2,-0.6 -0.921 10.7-149.4-133.8 109.1 134.9 6.1 7.8 7 7 A T E -A 85 0A 27 -2,-0.4 2,-0.4 78,-0.3 78,-0.3 -0.654 25.6-179.8 -78.3 115.4 136.5 4.0 10.5 8 8 A L E -A 84 0A 0 76,-2.6 76,-2.9 -2,-0.6 2,-1.0 -0.976 27.1-138.3-126.6 126.1 134.8 0.6 10.5 9 9 A E E -A 83 0A 91 -2,-0.4 2,-0.9 74,-0.3 74,-0.3 -0.678 25.4-130.9 -83.0 100.2 135.5 -2.3 12.8 10 10 A R - 0 0 61 72,-2.8 5,-0.3 -2,-1.0 73,-0.1 -0.283 35.0-159.7 -52.4 92.3 135.4 -5.4 10.5 11 11 A G - 0 0 26 3,-1.9 5,-0.1 -2,-0.9 -1,-0.1 0.151 37.1 -76.6 -65.6-172.3 133.1 -7.5 12.7 12 12 A N S S+ 0 0 182 1,-0.2 3,-0.1 3,-0.1 -1,-0.1 0.904 137.4 39.2 -55.6 -44.9 132.6 -11.3 12.7 13 13 A S S S- 0 0 127 1,-0.3 2,-0.3 2,-0.1 -1,-0.2 0.748 125.4-103.2 -77.5 -25.1 130.5 -11.0 9.5 14 14 A G - 0 0 6 1,-0.2 -3,-1.9 -5,-0.1 30,-0.7 -0.954 57.3 -34.2 138.6-157.6 132.8 -8.3 8.1 15 15 A L S S- 0 0 4 -2,-0.3 30,-1.5 -5,-0.3 29,-0.2 0.972 76.4-121.6 -67.7 -53.8 132.7 -4.5 7.6 16 16 A G S S+ 0 0 9 28,-0.3 24,-1.0 1,-0.3 30,-0.4 0.665 73.1 78.2 119.4 26.3 129.0 -4.2 7.0 17 17 A F E -D 39 0B 8 22,-0.3 2,-0.4 28,-0.1 22,-0.3 -0.930 61.0-135.7-164.4 136.3 128.4 -2.7 3.5 18 18 A S E -D 38 0B 57 20,-3.5 19,-2.8 -2,-0.3 20,-1.9 -0.798 20.0-160.4 -98.3 134.8 128.5 -3.8 -0.1 19 19 A I E -D 36 0B 7 -2,-0.4 2,-0.4 17,-0.3 17,-0.3 -0.884 7.5-173.5-117.2 146.3 130.1 -1.7 -2.8 20 20 A A E +D 35 0B 13 15,-3.5 15,-1.4 -2,-0.4 34,-0.0 -1.000 51.1 72.3-137.8 134.8 129.7 -1.7 -6.6 21 21 A G + 0 0 0 4,-0.8 7,-0.1 -2,-0.4 -1,-0.1 0.343 55.0 139.1 145.4 -7.0 131.6 0.2 -9.3 22 22 A G S S- 0 0 0 13,-0.1 47,-0.3 3,-0.1 11,-0.2 0.137 71.6 -88.4 -57.3 178.2 135.1 -1.4 -9.6 23 23 A T S S+ 0 0 62 45,-2.0 46,-0.2 9,-0.3 -1,-0.1 0.760 128.9 43.4 -61.0 -29.3 136.9 -2.0 -12.8 24 24 A D S S+ 0 0 105 1,-0.2 -1,-0.2 8,-0.1 45,-0.1 0.805 122.2 36.4 -87.6 -33.4 135.3 -5.5 -13.2 25 25 A N S S- 0 0 73 7,-0.1 2,-2.6 6,-0.0 -4,-0.8 -0.805 72.4-160.1-124.5 88.7 131.8 -4.4 -12.2 26 26 A P + 0 0 54 0, 0.0 -3,-0.1 0, 0.0 -4,-0.1 -0.386 18.3 171.0 -69.5 73.2 130.9 -1.0 -13.6 27 27 A H + 0 0 73 -2,-2.6 -6,-0.1 -5,-0.2 7,-0.1 0.809 67.3 59.9 -52.1 -31.3 128.1 -0.3 -11.1 28 28 A I S S- 0 0 58 3,-0.4 -7,-0.1 5,-0.3 6,-0.0 0.194 122.2 -67.4 -79.2-157.4 128.1 3.2 -12.5 29 29 A G S S- 0 0 67 1,-0.1 -8,-0.0 -8,-0.0 -1,-0.0 0.954 105.1 -45.7 -62.7 -50.8 127.6 4.2 -16.2 30 30 A D S S+ 0 0 129 -9,-0.1 -1,-0.1 -5,-0.1 -3,-0.1 -0.048 103.1 101.8 177.4 61.3 130.8 2.5 -17.4 31 31 A D S S- 0 0 99 2,-0.2 -3,-0.4 -9,-0.1 -4,-0.1 -0.958 75.0-109.8-148.3 164.6 133.9 3.3 -15.3 32 32 A P + 0 0 36 0, 0.0 2,-0.5 0, 0.0 36,-0.3 0.344 68.2 136.4 -78.8 7.7 136.1 1.8 -12.5 33 33 A S - 0 0 50 -11,-0.2 2,-0.6 -10,-0.1 -5,-0.3 -0.431 49.4-144.7 -61.5 109.8 134.7 4.3 -10.0 34 34 A I + 0 0 1 -2,-0.5 23,-0.6 31,-0.5 2,-0.3 -0.698 30.6 162.6 -81.7 118.9 134.0 2.2 -6.9 35 35 A F E -DE 20 56B 9 -15,-1.4 -15,-3.5 -2,-0.6 21,-0.3 -0.982 37.5-102.1-140.3 148.6 130.9 3.2 -5.0 36 36 A I E -D 19 0B 0 19,-2.5 -17,-0.3 -2,-0.3 18,-0.2 -0.237 23.4-176.0 -68.6 156.4 128.7 1.7 -2.4 37 37 A T E - 0 0 54 -19,-2.8 2,-0.3 1,-0.3 -18,-0.2 0.616 67.4 -8.5-121.4 -33.0 125.3 0.2 -3.2 38 38 A K E -D 18 0B 106 -20,-1.9 -20,-3.5 14,-0.1 2,-0.4 -0.855 52.6-138.0-172.1 136.2 123.9 -0.9 0.2 39 39 A I E -D 17 0B 30 -22,-0.3 -22,-0.3 -2,-0.3 14,-0.1 -0.830 29.7-125.5 -99.3 130.8 125.0 -1.1 3.8 40 40 A I > - 0 0 65 -24,-1.0 3,-1.6 -2,-0.4 6,-0.7 -0.684 24.9-121.7 -83.1 118.8 123.9 -4.2 5.7 41 41 A P T 3 S+ 0 0 120 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 -0.287 95.8 29.7 -58.4 134.7 122.0 -3.5 9.0 42 42 A G T 3 S+ 0 0 60 1,-0.4 2,-0.1 -26,-0.0 -2,-0.0 0.337 98.8 109.5 96.4 -5.6 123.6 -5.0 12.1 43 43 A G S <> S- 0 0 13 -3,-1.6 4,-3.2 -27,-0.3 -1,-0.4 -0.381 89.5 -92.6 -95.8 177.3 127.1 -4.9 10.7 44 44 A A H > S+ 0 0 1 -30,-0.7 4,-1.9 -29,-0.2 -28,-0.3 0.864 127.6 47.2 -56.2 -37.3 130.1 -2.7 11.6 45 45 A A H > S+ 0 0 1 -30,-1.5 4,-2.5 2,-0.2 5,-0.5 0.949 116.6 40.5 -69.6 -51.7 129.0 -0.2 8.9 46 46 A A H 4 S+ 0 0 43 -6,-0.7 -2,-0.2 -30,-0.4 -1,-0.2 0.826 117.8 49.7 -67.3 -32.3 125.3 -0.1 9.8 47 47 A Q H < S+ 0 0 129 -4,-3.2 -1,-0.2 1,-0.1 -2,-0.2 0.871 114.4 44.5 -73.4 -38.9 126.2 -0.1 13.6 48 48 A D H < S- 0 0 69 -4,-1.9 -2,-0.2 -5,-0.3 -3,-0.2 0.977 86.5-155.8 -69.4 -58.3 128.7 2.7 13.2 49 49 A G < + 0 0 62 -4,-2.5 -3,-0.1 -5,-0.2 -4,-0.1 0.831 58.5 111.5 83.1 35.4 126.7 5.0 11.0 50 50 A R + 0 0 158 -5,-0.5 2,-0.2 -43,-0.1 -4,-0.1 0.691 64.6 62.1-107.5 -30.2 129.6 6.9 9.5 51 51 A L - 0 0 16 -6,-0.4 2,-0.3 -44,-0.1 -2,-0.1 -0.658 65.3-156.1 -99.4 155.8 129.4 5.6 5.9 52 52 A R > - 0 0 155 -2,-0.2 3,-1.2 -14,-0.0 -16,-0.3 -0.975 25.4-100.5-132.1 145.2 126.6 6.0 3.4 53 53 A V T 3 S+ 0 0 43 -2,-0.3 -16,-0.2 1,-0.2 3,-0.1 -0.178 103.8 33.0 -61.0 154.9 125.5 4.0 0.3 54 54 A N T 3 S+ 0 0 74 1,-0.3 2,-0.3 -18,-0.2 -1,-0.2 0.416 82.3 142.9 77.1 1.1 126.4 5.2 -3.2 55 55 A D < - 0 0 5 -3,-1.2 -19,-2.5 -20,-0.1 2,-1.1 -0.581 53.6-128.5 -74.9 127.4 129.7 6.7 -1.8 56 56 A S B -E 35 0B 6 33,-2.3 -21,-0.3 -2,-0.3 33,-0.3 -0.680 26.0-126.5 -84.8 102.1 132.5 6.2 -4.3 57 57 A I + 0 0 3 -2,-1.1 -23,-0.4 -23,-0.6 31,-0.3 -0.076 32.6 174.0 -45.7 136.5 135.4 4.5 -2.4 58 58 A L - 0 0 27 29,-3.1 7,-1.7 1,-0.4 2,-0.3 0.736 63.0 -0.5-112.3 -50.3 138.7 6.3 -2.6 59 59 A F E -BC 64 87A 90 28,-0.5 28,-2.8 5,-0.2 -1,-0.4 -0.962 50.0-148.5-143.5 159.7 141.0 4.4 -0.2 60 60 A V E S- C 0 86A 2 3,-1.8 2,-2.9 -2,-0.3 3,-0.3 -0.844 74.4 -57.2-133.9 93.3 140.9 1.4 2.2 61 61 A N S S- 0 0 94 24,-1.4 19,-0.1 -2,-0.4 16,-0.0 -0.398 130.7 -15.5 71.0 -68.8 143.3 1.9 5.2 62 62 A E S S+ 0 0 177 -2,-2.9 2,-0.4 2,-0.0 -1,-0.2 -0.025 115.0 106.8-153.6 31.2 146.3 2.3 2.8 63 63 A V - 0 0 45 -3,-0.3 -3,-1.8 10,-0.0 2,-0.5 -0.962 56.4-142.8-121.4 135.7 144.9 1.0 -0.5 64 64 A D B -B 59 0A 78 -2,-0.4 3,-0.3 -5,-0.2 -5,-0.2 -0.835 10.7-172.9 -98.8 126.5 143.9 3.1 -3.6 65 65 A V > + 0 0 3 -7,-1.7 3,-0.6 -2,-0.5 -31,-0.5 -0.095 48.6 118.9-107.1 33.8 140.9 1.9 -5.6 66 66 A R T 3 S+ 0 0 182 1,-0.2 -1,-0.2 -8,-0.2 -7,-0.0 0.913 95.3 9.6 -63.8 -44.5 141.3 4.3 -8.4 67 67 A E T 3 S+ 0 0 153 -3,-0.3 2,-0.3 -34,-0.1 -1,-0.2 -0.300 101.7 119.7-133.4 50.3 141.7 1.6 -11.0 68 68 A V < - 0 0 32 -3,-0.6 -45,-2.0 -36,-0.3 -44,-0.1 -0.874 64.5-101.3-117.7 149.6 140.8 -1.6 -9.1 69 69 A T > - 0 0 49 -47,-0.3 4,-2.3 -2,-0.3 5,-0.2 -0.163 34.8-107.3 -63.4 160.1 138.1 -4.2 -9.8 70 70 A H H > S+ 0 0 43 1,-0.3 4,-2.2 2,-0.2 -51,-0.1 0.838 125.1 50.0 -56.8 -33.1 134.8 -4.2 -7.8 71 71 A S H > S+ 0 0 60 2,-0.2 4,-3.4 1,-0.2 -1,-0.3 0.841 106.8 53.8 -74.8 -33.7 136.1 -7.4 -6.1 72 72 A A H > S+ 0 0 26 2,-0.2 4,-1.2 1,-0.2 -2,-0.2 0.883 111.4 46.1 -67.4 -36.8 139.5 -5.7 -5.4 73 73 A A H X S+ 0 0 0 -4,-2.3 4,-1.7 2,-0.2 -2,-0.2 0.938 114.7 46.7 -68.7 -46.6 137.6 -2.9 -3.7 74 74 A V H X S+ 0 0 34 -4,-2.2 4,-1.7 1,-0.3 3,-0.5 0.956 111.1 51.6 -58.1 -50.6 135.4 -5.3 -1.8 75 75 A E H X S+ 0 0 93 -4,-3.4 4,-2.1 1,-0.2 -1,-0.3 0.795 102.9 61.9 -56.2 -30.4 138.5 -7.3 -0.9 76 76 A A H < S+ 0 0 0 -4,-1.2 -1,-0.2 2,-0.2 -2,-0.2 0.944 103.0 47.7 -62.1 -47.0 139.9 -4.0 0.4 77 77 A L H >< S+ 0 0 3 -4,-1.7 3,-0.6 -3,-0.5 -1,-0.2 0.861 115.8 45.9 -60.4 -35.9 137.2 -3.7 2.9 78 78 A K H 3< S+ 0 0 104 -4,-1.7 3,-0.3 1,-0.2 -1,-0.2 0.752 114.4 47.7 -77.3 -27.1 137.9 -7.4 3.9 79 79 A E T 3< S+ 0 0 98 -4,-2.1 -1,-0.2 -5,-0.2 -2,-0.2 0.225 82.7 97.2 -98.6 13.3 141.6 -6.7 3.9 80 80 A A S < S- 0 0 2 -3,-0.6 2,-0.9 1,-0.2 -1,-0.2 0.193 86.8-133.0 -85.3 16.8 141.3 -3.6 6.1 81 81 A G - 0 0 55 -3,-0.3 -1,-0.2 -72,-0.1 3,-0.1 -0.574 54.6 -50.2 72.6-105.2 142.0 -5.7 9.2 82 82 A S S S+ 0 0 75 -2,-0.9 -72,-2.8 1,-0.2 2,-1.2 0.378 126.2 29.2-128.2 -93.0 139.4 -4.7 11.7 83 83 A I E S+A 9 0A 95 -74,-0.3 2,-0.4 -73,-0.1 -74,-0.3 -0.642 79.5 173.5 -80.3 96.4 138.7 -1.0 12.4 84 84 A V E -A 8 0A 0 -76,-2.9 -76,-2.6 -2,-1.2 2,-1.0 -0.906 34.9-131.8-112.2 136.8 139.6 0.6 9.0 85 85 A R E -A 7 0A 157 -2,-0.4 -24,-1.4 -78,-0.3 2,-0.4 -0.723 30.8-163.9 -85.8 102.2 139.2 4.2 7.9 86 86 A L E -AC 6 60A 0 -80,-3.0 -80,-2.3 -2,-1.0 2,-0.4 -0.723 7.1-142.8 -91.6 136.6 137.6 3.9 4.5 87 87 A Y E +AC 5 59A 103 -28,-2.8 -29,-3.1 -2,-0.4 -28,-0.5 -0.778 23.5 174.2-100.4 141.7 137.6 6.9 2.1 88 88 A V E -A 4 0A 4 -84,-2.1 -84,-1.5 -2,-0.4 2,-0.4 -0.904 25.3-123.9-140.3 168.0 134.7 7.7 -0.1 89 89 A M E +A 3 0A 27 -33,-0.3 -33,-2.3 -2,-0.3 2,-0.4 -0.950 21.3 178.9-119.5 135.9 133.4 10.3 -2.6 90 90 A R E A 2 0A 104 -88,-2.2 -88,-2.6 -2,-0.4 -35,-0.1 -0.886 360.0 360.0-140.7 106.9 130.1 12.2 -2.4 91 91 A R 0 0 189 -2,-0.4 -2,-0.0 -90,-0.3 -88,-0.0 -0.721 360.0 360.0 -88.9 360.0 129.2 14.8 -5.0