==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER NEUROPEPTIDE 19-FEB-02 1IU2 . COMPND 2 MOLECULE: PSD-95; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR J.-F.LONG,H.TOCHIO,P.WANG,C.SALA,M.NIETHAMMER,M.SHENG, . 91 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5448.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 64 70.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 24 26.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 101 0, 0.0 2,-0.4 0, 0.0 90,-0.3 0.000 360.0 360.0 360.0 138.4 -3.2 -10.0 -12.6 2 2 A E E -A 90 0A 159 88,-2.9 88,-1.1 2,-0.0 2,-0.6 -0.877 360.0-134.9-108.8 137.7 -2.7 -6.4 -13.8 3 3 A Y E +A 89 0A 122 -2,-0.4 2,-0.3 86,-0.2 86,-0.2 -0.808 29.3 178.4 -94.5 119.1 -0.5 -3.8 -12.1 4 4 A E E -A 88 0A 49 84,-2.1 84,-2.5 -2,-0.6 2,-0.4 -0.781 20.2-132.0-117.1 161.9 -2.1 -0.4 -11.8 5 5 A E E -A 87 0A 88 -2,-0.3 2,-0.4 82,-0.2 82,-0.2 -0.894 13.6-167.0-115.9 144.6 -1.0 2.9 -10.2 6 6 A I E -A 86 0A 0 80,-2.4 80,-3.1 -2,-0.4 2,-0.6 -0.922 11.2-150.7-135.8 111.7 -2.9 5.2 -7.9 7 7 A T E +A 85 0A 42 -2,-0.4 2,-0.4 78,-0.3 78,-0.3 -0.687 24.6 179.5 -81.5 115.6 -1.8 8.7 -7.0 8 8 A L E -A 84 0A 0 76,-2.9 76,-2.9 -2,-0.6 2,-1.1 -0.976 26.8-139.7-126.1 127.1 -3.0 9.5 -3.5 9 9 A E E -A 83 0A 85 -2,-0.4 2,-1.0 74,-0.3 74,-0.4 -0.702 27.3-127.8 -85.5 100.7 -2.5 12.7 -1.6 10 10 A R - 0 0 67 72,-3.7 5,-0.3 -2,-1.1 73,-0.1 -0.222 33.7-145.9 -49.3 89.3 -1.7 11.7 2.0 11 11 A G - 0 0 35 3,-1.6 3,-0.3 -2,-1.0 5,-0.1 0.153 34.6 -81.8 -51.1 176.0 -4.4 13.8 3.7 12 12 A N S S+ 0 0 176 1,-0.3 -1,-0.1 3,-0.1 3,-0.1 0.751 138.3 39.8 -54.9 -24.1 -3.8 15.4 7.1 13 13 A S S S- 0 0 126 1,-0.4 2,-0.3 2,-0.1 -1,-0.3 0.692 126.6 -91.7 -97.4 -24.8 -4.9 12.0 8.5 14 14 A G - 0 0 8 -3,-0.3 -3,-1.6 1,-0.2 30,-0.6 -0.958 57.5 -42.8 145.9-163.5 -3.0 9.9 5.9 15 15 A L S S- 0 0 5 -5,-0.3 30,-1.4 -2,-0.3 29,-0.6 0.996 72.1-119.1 -66.1 -63.6 -3.5 8.2 2.6 16 16 A G S S+ 0 0 8 1,-0.3 24,-1.4 28,-0.3 30,-0.4 0.586 74.4 76.8 131.6 22.3 -7.0 6.7 3.2 17 17 A F E -D 39 0B 9 22,-0.3 2,-0.4 28,-0.1 22,-0.3 -0.939 61.7-134.4-161.6 135.3 -6.8 2.9 2.9 18 18 A S E -D 38 0B 57 20,-3.4 19,-2.8 -2,-0.3 20,-1.9 -0.750 21.1-157.6 -93.6 135.5 -5.7 0.0 5.1 19 19 A I E -D 36 0B 6 -2,-0.4 2,-0.5 17,-0.3 17,-0.3 -0.867 6.1-158.6-114.2 147.7 -3.6 -2.8 3.6 20 20 A A E +D 35 0B 12 15,-3.3 15,-1.6 -2,-0.4 2,-0.2 -0.983 51.6 60.0-126.6 119.7 -3.1 -6.3 4.8 21 21 A G + 0 0 0 -2,-0.5 13,-0.3 13,-0.3 2,-0.2 -0.640 41.9 124.3 143.7 159.3 -0.1 -8.3 3.8 22 22 A G S S- 0 0 1 9,-0.6 47,-0.3 11,-0.4 11,-0.2 -0.807 71.7 -61.3 145.1 173.6 3.7 -8.3 3.9 23 23 A T S S+ 0 0 58 45,-2.5 46,-0.3 -2,-0.2 -1,-0.1 0.633 136.1 33.5 -63.7 -14.4 6.8 -10.3 4.8 24 24 A D S S+ 0 0 113 44,-0.2 -1,-0.2 1,-0.2 45,-0.1 0.648 122.1 44.7-112.8 -25.8 5.6 -10.2 8.5 25 25 A N - 0 0 83 7,-0.1 2,-3.3 6,-0.0 3,-0.2 -0.780 67.2-162.8-124.3 86.8 1.8 -10.3 8.0 26 26 A P > + 0 0 57 0, 0.0 4,-0.8 0, 0.0 -3,-0.1 -0.286 20.1 167.6 -67.7 64.1 0.8 -13.0 5.5 27 27 A H T 4 + 0 0 74 -2,-3.3 -6,-0.1 6,-0.1 7,-0.1 0.774 66.9 54.4 -49.1 -27.2 -2.7 -11.5 5.0 28 28 A I T 4 S- 0 0 53 3,-0.6 2,-1.6 5,-0.3 -7,-0.0 0.178 127.4 -48.2 -88.4-152.3 -2.8 -13.8 2.0 29 29 A G T 4 S- 0 0 68 1,-0.2 -2,-0.1 0, 0.0 -1,-0.1 -0.265 107.7 -58.0 -81.8 52.7 -2.2 -17.6 1.9 30 30 A D S < S+ 0 0 133 -2,-1.6 -1,-0.2 -4,-0.8 -3,-0.1 0.900 107.6 122.1 76.5 43.4 1.0 -17.5 3.9 31 31 A D S S- 0 0 97 2,-0.2 -9,-0.6 -6,-0.1 -3,-0.6 -0.930 73.8-120.0-135.0 158.8 2.8 -15.1 1.5 32 32 A P + 0 0 47 0, 0.0 -9,-0.2 0, 0.0 36,-0.2 0.454 66.1 136.6 -76.2 0.3 4.5 -11.7 1.7 33 33 A S - 0 0 41 -11,-0.2 2,-0.6 -12,-0.1 -11,-0.4 -0.307 48.1-146.6 -54.1 114.9 2.0 -10.4 -0.9 34 34 A I E + E 0 57B 1 23,-0.5 23,-0.8 31,-0.3 2,-0.3 -0.775 29.5 161.8 -89.2 119.6 0.8 -7.0 0.3 35 35 A F E -DE 20 56B 7 -15,-1.6 -15,-3.3 -2,-0.6 21,-0.3 -0.990 37.5-104.4-142.4 147.6 -2.8 -6.3 -0.6 36 36 A I E -D 19 0B 0 19,-2.5 18,-0.4 -2,-0.3 -17,-0.3 -0.248 21.9-174.5 -69.3 155.8 -5.4 -3.8 0.6 37 37 A T E - 0 0 61 -19,-2.8 2,-0.3 1,-0.3 -18,-0.2 0.623 67.1 -7.4-120.0 -32.9 -8.3 -4.8 2.9 38 38 A K E -D 18 0B 93 -20,-1.9 -20,-3.4 14,-0.1 2,-0.4 -0.912 53.6-136.7-169.3 142.1 -10.4 -1.6 3.1 39 39 A I E -D 17 0B 32 -22,-0.3 -22,-0.3 -2,-0.3 14,-0.1 -0.861 28.9-124.9-104.5 133.3 -10.3 2.0 2.1 40 40 A I > - 0 0 60 -24,-1.4 3,-1.2 -2,-0.4 6,-0.7 -0.685 24.2-123.4 -83.9 122.7 -11.5 4.6 4.7 41 41 A P T 3 S+ 0 0 118 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 -0.394 94.6 31.7 -64.6 132.2 -14.3 6.9 3.5 42 42 A G T 3 S+ 0 0 63 1,-0.4 2,-0.2 -2,-0.1 -2,-0.0 0.484 99.2 106.2 99.0 5.3 -13.4 10.6 3.7 43 43 A G S <> S- 0 0 19 -3,-1.2 4,-3.5 -27,-0.2 -1,-0.4 -0.512 90.1 -90.3-109.1 179.2 -9.7 10.1 3.1 44 44 A A H > S+ 0 0 7 -30,-0.6 4,-1.8 -29,-0.6 -28,-0.3 0.877 127.1 47.9 -55.7 -39.1 -7.4 10.8 0.2 45 45 A A H > S+ 0 0 2 -30,-1.4 4,-3.2 2,-0.2 5,-0.5 0.973 119.1 35.6 -66.4 -57.4 -8.1 7.3 -1.1 46 46 A A H 4 S+ 0 0 46 -6,-0.7 -2,-0.2 -30,-0.4 -1,-0.2 0.802 117.9 54.8 -67.8 -28.8 -11.9 7.3 -0.8 47 47 A Q H < S+ 0 0 155 -4,-3.5 -1,-0.2 1,-0.1 -2,-0.2 0.846 117.7 35.3 -72.2 -34.6 -11.9 11.0 -1.8 48 48 A D H < S- 0 0 55 -4,-1.8 -2,-0.2 -5,-0.3 -3,-0.2 0.950 87.0-155.6 -82.7 -58.0 -9.9 10.2 -5.0 49 49 A G < + 0 0 44 -4,-3.2 -3,-0.1 -5,-0.2 -4,-0.1 0.878 54.5 119.3 82.2 41.2 -11.4 6.8 -5.9 50 50 A R + 0 0 166 -5,-0.5 2,-0.3 -43,-0.1 -4,-0.1 0.433 63.2 63.9-113.1 -4.7 -8.4 5.5 -7.9 51 51 A L - 0 0 18 -6,-0.4 2,-0.4 -45,-0.1 -12,-0.1 -0.879 63.7-154.4-121.4 153.7 -7.7 2.5 -5.7 52 52 A R > - 0 0 182 -2,-0.3 3,-1.1 -14,-0.0 -16,-0.2 -0.990 28.7-102.5-130.1 135.3 -9.7 -0.6 -4.9 53 53 A V T 3 S+ 0 0 48 -2,-0.4 -16,-0.2 1,-0.2 3,-0.1 0.004 104.8 37.6 -49.1 157.8 -9.5 -2.8 -1.8 54 54 A N T 3 S+ 0 0 69 -18,-0.4 2,-0.3 1,-0.3 -1,-0.2 0.440 80.7 149.1 75.4 1.0 -7.7 -6.2 -2.1 55 55 A D < - 0 0 2 -3,-1.1 -19,-2.5 -20,-0.1 2,-1.0 -0.509 48.3-131.5 -68.6 125.2 -5.2 -4.4 -4.4 56 56 A S E -E 35 0B 2 33,-1.2 33,-0.5 -2,-0.3 -21,-0.3 -0.703 21.4-128.6 -86.6 102.2 -1.8 -6.1 -4.0 57 57 A I E +E 34 0B 5 -2,-1.0 -23,-0.5 -23,-0.8 31,-0.3 -0.207 35.7 167.9 -49.8 124.9 0.8 -3.3 -3.4 58 58 A L + 0 0 32 29,-3.6 7,-1.0 1,-0.4 8,-0.3 0.687 66.4 3.3-109.8 -34.1 3.7 -3.8 -5.8 59 59 A F E -BC 64 87A 85 28,-1.3 28,-2.5 5,-0.2 -1,-0.4 -0.971 54.6-156.8-150.3 161.2 5.4 -0.4 -5.4 60 60 A V E > S-BC 63 86A 4 3,-1.7 2,-3.3 -2,-0.3 3,-0.9 -0.830 71.2 -48.4-148.7 104.0 5.0 2.8 -3.3 61 61 A N T 3 S- 0 0 94 24,-1.2 24,-0.1 -2,-0.3 19,-0.0 -0.354 131.0 -23.3 70.4 -66.8 6.5 6.1 -4.5 62 62 A E T 3 S+ 0 0 159 -2,-3.3 2,-0.4 0, 0.0 -1,-0.3 0.041 114.8 107.7-163.4 29.8 9.8 4.4 -5.2 63 63 A V E < -B 60 0A 65 -3,-0.9 -3,-1.7 10,-0.0 2,-0.7 -0.939 58.2-138.9-121.0 142.0 9.8 1.3 -3.0 64 64 A D E > -B 59 0A 84 -2,-0.4 3,-0.6 -5,-0.2 -5,-0.2 -0.868 11.9-172.7-101.1 111.5 9.4 -2.3 -4.0 65 65 A V G > + 0 0 3 -7,-1.0 3,-0.8 -2,-0.7 -31,-0.3 0.092 55.7 111.3 -89.7 24.1 7.2 -4.2 -1.5 66 66 A R G 3 S+ 0 0 183 -8,-0.3 -1,-0.2 1,-0.2 -44,-0.1 0.740 98.0 15.1 -67.9 -22.1 8.0 -7.5 -3.2 67 67 A E G < S+ 0 0 140 -3,-0.6 2,-0.3 2,-0.1 -1,-0.2 -0.172 101.3 117.1-146.0 44.6 9.9 -8.5 -0.0 68 68 A V < - 0 0 27 -3,-0.8 -45,-2.5 -36,-0.2 -44,-0.2 -0.887 65.4-105.1-117.9 148.3 8.8 -6.0 2.6 69 69 A T >> - 0 0 37 -2,-0.3 4,-2.6 -47,-0.3 3,-0.9 -0.307 34.6-109.1 -67.5 152.0 7.0 -6.6 5.9 70 70 A H H 3> S+ 0 0 34 1,-0.3 4,-2.6 2,-0.2 5,-0.1 0.837 125.1 52.3 -49.5 -34.1 3.3 -5.6 6.2 71 71 A S H 3> S+ 0 0 78 2,-0.2 4,-3.5 1,-0.2 -1,-0.3 0.851 107.0 51.7 -71.8 -33.7 4.5 -2.8 8.4 72 72 A A H <> S+ 0 0 18 -3,-0.9 4,-2.3 2,-0.2 -2,-0.2 0.906 111.5 47.1 -68.5 -39.7 7.0 -1.7 5.8 73 73 A A H X S+ 0 0 0 -4,-2.6 4,-1.9 2,-0.2 -2,-0.2 0.942 115.4 45.6 -64.3 -46.9 4.2 -1.7 3.2 74 74 A V H X S+ 0 0 39 -4,-2.6 4,-1.6 -5,-0.2 -2,-0.2 0.956 113.5 48.6 -60.0 -50.6 2.0 0.2 5.6 75 75 A E H X S+ 0 0 89 -4,-3.5 4,-2.3 1,-0.2 5,-0.2 0.849 104.4 62.9 -57.7 -35.1 4.9 2.5 6.5 76 76 A A H X S+ 0 0 8 -4,-2.3 4,-1.7 2,-0.3 3,-0.3 0.954 102.3 47.6 -55.3 -51.9 5.4 2.9 2.7 77 77 A L H < S+ 0 0 4 -4,-1.9 -1,-0.2 1,-0.3 -2,-0.2 0.867 116.2 45.9 -56.4 -36.6 2.0 4.5 2.3 78 78 A K H < S+ 0 0 100 -4,-1.6 3,-0.4 1,-0.2 -1,-0.3 0.735 116.7 44.2 -77.3 -25.7 2.9 6.7 5.2 79 79 A E H < S+ 0 0 135 -4,-2.3 -2,-0.2 -3,-0.3 -1,-0.2 0.503 84.5 94.4 -96.6 -7.0 6.3 7.4 3.8 80 80 A A S < S- 0 0 6 -4,-1.7 2,-0.9 -5,-0.2 -1,-0.2 0.695 88.3-137.2 -57.6 -17.7 5.0 8.0 0.3 81 81 A G - 0 0 45 -3,-0.4 -1,-0.2 -4,-0.2 3,-0.1 -0.824 49.2 -44.1 101.5-100.7 4.9 11.7 1.3 82 82 A S S S+ 0 0 79 -2,-0.9 -72,-3.7 -3,-0.1 2,-1.5 0.353 127.2 23.9-130.4 -91.3 1.7 13.3 0.1 83 83 A I E S+A 9 0A 84 -74,-0.4 2,-0.4 -73,-0.1 -74,-0.3 -0.658 82.2 174.0 -87.0 86.3 0.4 12.6 -3.4 84 84 A V E -A 8 0A 0 -76,-2.9 -76,-2.9 -2,-1.5 2,-1.0 -0.803 33.9-132.2-101.3 138.8 2.1 9.2 -4.0 85 85 A R E -A 7 0A 136 -2,-0.4 -24,-1.2 -78,-0.3 2,-0.4 -0.753 29.9-163.6 -88.7 103.2 1.6 6.9 -7.0 86 86 A L E -AC 6 60A 0 -80,-3.1 -80,-2.4 -2,-1.0 2,-0.4 -0.726 8.1-143.5 -92.6 138.0 1.0 3.5 -5.5 87 87 A Y E +AC 5 59A 77 -28,-2.5 -29,-3.6 -2,-0.4 -28,-1.3 -0.838 27.0 166.8-101.9 133.5 1.3 0.3 -7.5 88 88 A V E -A 4 0A 0 -84,-2.5 -84,-2.1 -2,-0.4 2,-0.3 -0.904 31.3-111.4-139.7 167.9 -1.0 -2.6 -6.8 89 89 A M E -A 3 0A 30 -33,-0.5 -33,-1.2 -2,-0.3 2,-0.4 -0.743 22.0-164.9-103.2 151.2 -2.1 -5.9 -8.4 90 90 A R E A 2 0A 152 -88,-1.1 -88,-2.9 -2,-0.3 -35,-0.1 -0.940 360.0 360.0-140.5 115.7 -5.6 -6.7 -9.8 91 91 A R 0 0 186 -2,-0.4 -1,-0.1 -90,-0.3 -36,-0.0 0.758 360.0 360.0-100.9 360.0 -6.9 -10.2 -10.6