==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=1-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PRION PROTEIN 08-JUN-06 2IV4 . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR G.SAVIANO,T.TANCREDI . 16 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1750.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 9 56.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 43.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 180 A V 0 0 152 0, 0.0 4,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 140.4 -10.0 -1.2 -2.4 2 181 A N > + 0 0 107 3,-0.1 4,-1.1 2,-0.1 0, 0.0 0.116 360.0 82.4-131.5 15.4 -6.6 -0.3 -3.9 3 182 A I H > S+ 0 0 117 2,-0.2 4,-1.7 3,-0.1 5,-0.1 0.927 93.8 41.7 -85.0 -54.7 -5.4 1.9 -1.0 4 183 A T H > S+ 0 0 98 2,-0.2 4,-3.6 1,-0.2 5,-0.2 0.878 116.4 51.9 -59.7 -40.1 -4.1 -0.8 1.3 5 184 A I H > S+ 0 0 89 2,-0.2 4,-1.4 1,-0.2 -1,-0.2 0.962 109.5 46.9 -60.9 -54.5 -2.6 -2.6 -1.6 6 185 A K H < S+ 0 0 133 -4,-1.1 4,-0.4 1,-0.2 -1,-0.2 0.783 115.4 50.7 -57.8 -27.4 -0.8 0.5 -2.9 7 186 A Q H >X S+ 0 0 128 -4,-1.7 3,-2.1 2,-0.2 4,-0.5 0.955 107.7 47.4 -74.7 -54.4 0.3 0.8 0.7 8 187 A H H 3< S+ 0 0 141 -4,-3.6 4,-0.5 1,-0.3 3,-0.2 0.661 108.9 60.5 -61.1 -15.0 1.6 -2.7 1.2 9 188 A T T 3X S+ 0 0 54 -4,-1.4 4,-1.4 -5,-0.2 -1,-0.3 0.676 91.4 64.8 -84.7 -20.5 3.3 -2.1 -2.0 10 189 A V H <> S+ 0 0 50 -3,-2.1 4,-1.3 -4,-0.4 -1,-0.2 0.651 95.3 61.2 -74.9 -16.1 5.2 0.8 -0.6 11 190 A T H < S+ 0 0 113 -4,-0.5 -1,-0.2 -3,-0.2 -2,-0.2 0.822 117.8 26.6 -78.1 -34.0 6.9 -1.7 1.7 12 191 A T H 4 S+ 0 0 112 -4,-0.5 -2,-0.2 -3,-0.2 -1,-0.2 0.497 132.2 40.9-103.8 -10.0 8.4 -3.6 -1.2 13 192 A T H < S- 0 0 64 -4,-1.4 -3,-0.2 -5,-0.1 3,-0.2 0.596 85.1-154.7-109.0 -21.3 8.5 -0.5 -3.5 14 193 A T < - 0 0 111 -4,-1.3 2,-2.0 1,-0.2 -4,-0.1 0.885 17.4-175.4 43.3 49.6 9.6 2.0 -0.9 15 194 A K 0 0 165 1,-0.2 -1,-0.2 -6,-0.1 -5,-0.1 -0.551 360.0 360.0 -77.8 81.0 7.9 4.7 -2.9 16 195 A G 0 0 116 -2,-2.0 -1,-0.2 -3,-0.2 -2,-0.1 0.692 360.0 360.0 59.0 360.0 9.1 7.6 -0.8