==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=1-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PRION PROTEIN 08-JUN-06 2IV6 . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR G.SAVIANO,T.TANCREDI . 23 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2220.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 14 60.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 13.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 21.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 5 21.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 173 A N 0 0 145 0, 0.0 2,-2.6 0, 0.0 3,-0.2 0.000 360.0 360.0 360.0 155.5 2.3 -8.2 2.8 2 174 A N + 0 0 52 1,-0.2 4,-0.2 2,-0.0 7,-0.2 -0.320 360.0 51.9 77.6 -56.6 1.5 -6.2 -0.3 3 175 A F S > S+ 0 0 181 -2,-2.6 3,-2.9 2,-0.2 4,-0.5 0.984 120.1 25.3 -71.3 -81.6 -0.3 -9.2 -1.7 4 176 A V T > S+ 0 0 122 1,-0.3 3,-1.1 -3,-0.2 4,-0.5 0.854 119.8 62.2 -51.7 -37.4 -2.8 -10.4 0.9 5 177 A H T >> S+ 0 0 54 1,-0.3 4,-2.7 2,-0.2 3,-1.2 0.712 82.9 83.9 -61.6 -20.0 -2.7 -6.8 2.1 6 178 A N H <> S+ 0 0 78 -3,-2.9 4,-2.7 1,-0.3 5,-0.3 0.923 82.5 56.9 -47.2 -53.1 -4.0 -6.0 -1.3 7 179 A C H <4 S+ 0 0 99 -3,-1.1 -1,-0.3 -4,-0.5 4,-0.2 0.842 114.9 39.7 -47.6 -35.9 -7.5 -6.7 -0.1 8 180 A V H X> S+ 0 0 80 -3,-1.2 4,-2.5 -4,-0.5 3,-0.9 0.773 108.3 63.5 -83.6 -29.8 -6.7 -4.1 2.5 9 181 A N H 3X S+ 0 0 18 -4,-2.7 4,-4.5 1,-0.3 5,-0.3 0.957 90.1 64.1 -57.8 -54.2 -5.0 -1.9 -0.1 10 182 A I H 3< S+ 0 0 99 -4,-2.7 -1,-0.3 1,-0.3 -2,-0.2 0.776 113.0 38.9 -40.0 -30.1 -8.1 -1.4 -2.1 11 183 A T H <4 S+ 0 0 117 -3,-0.9 -1,-0.3 -5,-0.3 -2,-0.3 0.866 117.0 47.1 -88.5 -44.1 -9.2 0.3 1.1 12 184 A I H < S- 0 0 69 -4,-2.5 -2,-0.2 -6,-0.2 -3,-0.2 0.917 89.5-151.7 -63.2 -45.0 -5.9 2.0 1.9 13 185 A K S < S+ 0 0 166 -4,-4.5 -3,-0.1 -5,-0.1 -4,-0.1 0.768 85.0 51.4 75.4 27.2 -5.6 3.2 -1.7 14 186 A Q S >> S+ 0 0 132 -5,-0.3 4,-2.0 3,-0.0 3,-1.2 0.326 73.5 111.4-155.0 -44.5 -1.8 3.1 -1.3 15 187 A H T 34 S+ 0 0 26 1,-0.2 2,-2.2 -6,-0.2 -2,-0.1 0.065 84.8 22.0 -39.9 154.5 -0.7 -0.2 0.0 16 188 A T T 34 S+ 0 0 42 1,-0.2 -1,-0.2 3,-0.1 -13,-0.1 -0.283 122.1 60.7 78.4 -52.9 1.2 -2.4 -2.4 17 189 A V T <4 S+ 0 0 117 -2,-2.2 -1,-0.2 -3,-1.2 -2,-0.2 0.982 106.0 42.8 -67.2 -59.7 2.1 0.7 -4.4 18 190 A T S < S- 0 0 52 -4,-2.0 2,-1.7 1,-0.2 -1,-0.1 0.925 79.9-176.8 -51.4 -51.5 4.0 2.5 -1.6 19 191 A T S S+ 0 0 90 -5,-0.2 -1,-0.2 1,-0.2 -2,-0.1 -0.282 75.6 58.3 81.7 -51.0 5.7 -0.8 -0.6 20 192 A T S S+ 0 0 114 -2,-1.7 -1,-0.2 -3,-0.1 -2,-0.1 0.932 76.4 151.8 -74.0 -48.9 7.4 1.0 2.3 21 193 A T + 0 0 48 1,-0.1 -1,-0.0 -7,-0.1 0, 0.0 0.005 20.7 179.3 47.8-157.7 4.2 2.1 3.9 22 194 A K 0 0 208 1,-0.6 -1,-0.1 0, 0.0 0, 0.0 -0.293 360.0 360.0 163.1 -63.9 4.2 2.6 7.7 23 195 A G 0 0 111 0, 0.0 -1,-0.6 0, 0.0 0, 0.0 -0.043 360.0 360.0-120.0 360.0 0.9 3.7 9.0