==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=1-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSFERASE 30-JUN-06 2IWJ . COMPND 2 MOLECULE: GAG-POL POLYPROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR P.AMODEO,M.A.CASTIGLIONE MORELLI,A.OSTUNI,P.CRISTINZIANO, . 27 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2247.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 14 51.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 25.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 22.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 23 A R 0 0 153 0, 0.0 26,-0.1 0, 0.0 18,-0.0 0.000 360.0 360.0 360.0 179.9 -2.6 2.7 -4.9 2 24 A A > - 0 0 72 1,-0.1 3,-1.1 2,-0.1 5,-0.1 0.879 360.0-174.5 42.2 60.1 -4.2 5.7 -2.9 3 25 A P G >>> + 0 0 48 0, 0.0 4,-2.7 0, 0.0 3,-2.3 0.672 59.9 90.5 -65.1 -19.8 -2.0 5.0 0.2 4 26 A R G 345S+ 0 0 221 1,-0.3 -2,-0.1 2,-0.2 0, 0.0 0.713 72.2 72.0 -50.6 -29.2 -3.6 7.7 2.5 5 27 A R G <45S- 0 0 120 -3,-1.1 -1,-0.3 1,-0.2 -3,-0.0 0.569 128.2 -2.5 -67.0 -9.4 -6.2 5.1 3.8 6 28 A Q T X45S- 0 0 87 -3,-2.3 3,-0.7 4,-0.0 -2,-0.2 0.371 88.5-115.5-145.7 -16.7 -3.4 3.4 5.9 7 29 A G T 3<5 - 0 0 41 -4,-2.7 -3,-0.2 1,-0.2 6,-0.1 0.636 57.0-100.3 67.5 15.6 -0.1 5.3 5.1 8 30 A C T 3>XS+ 0 0 0 -5,-0.9 4,-2.9 1,-0.1 5,-2.9 0.514 84.5 140.5 43.6 17.2 0.6 1.7 3.6 9 31 A W T <45S+ 0 0 184 -3,-0.7 5,-0.2 1,-0.2 -1,-0.1 0.724 82.2 24.3 -63.6 -19.9 2.7 1.0 6.9 10 32 A K T 45S+ 0 0 172 -4,-0.1 -1,-0.2 2,-0.1 -3,-0.0 0.628 115.9 64.8-111.8 -25.2 1.3 -2.7 7.0 11 33 A C T 45S- 0 0 3 -8,-0.1 -2,-0.2 14,-0.0 -3,-0.1 0.902 131.3 -83.7 -57.5 -45.2 0.5 -2.9 3.2 12 34 A G T >X5S+ 0 0 13 -4,-2.9 4,-3.0 4,-0.1 3,-2.7 0.496 75.0 148.2 150.8 18.9 4.3 -2.6 2.6 13 35 A K T 34< + 0 0 110 -5,-2.9 -4,-0.2 1,-0.3 -3,-0.1 0.665 66.6 79.6 -52.8 -19.5 5.5 1.1 2.6 14 36 A T T 34 S- 0 0 113 -6,-0.3 -1,-0.3 -5,-0.2 -5,-0.1 0.664 130.9 -25.6 -57.0 -19.4 8.8 -0.2 4.1 15 37 A G T <4 S+ 0 0 68 -3,-2.7 -2,-0.2 2,-0.0 -1,-0.1 0.414 103.4 118.6-173.4 -2.4 9.7 -1.2 0.5 16 38 A H < - 0 0 37 -4,-3.0 2,-0.3 -8,-0.1 -4,-0.1 -0.108 54.5-122.4 -69.6 174.1 6.6 -1.9 -1.8 17 39 A V >> - 0 0 100 1,-0.0 4,-2.3 -16,-0.0 3,-2.2 -0.896 23.7-116.5-117.6 146.8 5.4 -0.1 -5.0 18 40 A M T 34 S+ 0 0 81 -2,-0.3 -1,-0.0 1,-0.3 -2,-0.0 0.634 116.7 54.8 -63.0 -14.1 2.0 1.6 -5.4 19 41 A A T 34 S+ 0 0 88 2,-0.1 -1,-0.3 1,-0.1 4,-0.1 0.550 111.2 44.0 -91.2 -12.4 1.1 -1.0 -8.2 20 42 A K T X4 S+ 0 0 102 -3,-2.2 3,-1.8 2,-0.1 4,-0.2 0.743 97.6 78.2 -95.5 -32.1 1.9 -4.0 -5.9 21 43 A C T >X S+ 0 0 0 -4,-2.3 3,-2.2 1,-0.2 4,-0.8 0.764 77.3 70.3 -38.5 -43.6 -0.0 -2.2 -3.0 22 44 A P H 3> S+ 0 0 34 0, 0.0 4,-1.5 0, 0.0 3,-0.4 0.787 86.2 69.3 -56.5 -26.5 -3.5 -3.2 -4.5 23 45 A E H <4 S+ 0 0 121 -3,-1.8 -2,-0.2 1,-0.2 -3,-0.0 0.713 109.6 33.1 -59.7 -23.5 -2.7 -6.9 -3.4 24 46 A R H <4 S+ 0 0 118 -3,-2.2 -1,-0.2 -4,-0.2 -3,-0.1 0.505 131.1 29.3-113.5 -11.0 -3.1 -5.9 0.3 25 47 A Q H < S- 0 0 31 -4,-0.8 -2,-0.2 -3,-0.4 -4,-0.1 0.192 95.9-119.9-139.6 10.6 -5.8 -3.1 0.2 26 48 A A < 0 0 105 -4,-1.5 -3,-0.1 -5,-0.2 -5,-0.0 0.729 360.0 360.0 50.1 31.5 -8.1 -4.0 -2.8 27 49 A G 0 0 25 -5,-0.2 -3,-0.1 -6,-0.1 -2,-0.0 -0.754 360.0 360.0-168.9 360.0 -7.3 -0.6 -4.6