==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTITUMOR PROTEIN 19-JUN-02 1IXD . COMPND 2 MOLECULE: CYLINDROMATOSIS TUMOUR-SUPPRESSOR CYLD; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.SAITO,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL . 104 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7531.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 57.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 24 23.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 21 20.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 132 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 133.9 120.7 10.3 -1.8 2 2 A S - 0 0 132 1,-0.1 2,-1.1 7,-0.1 7,-0.0 -0.330 360.0-115.3 -65.6 145.6 120.8 6.5 -1.8 3 3 A S S S+ 0 0 129 -2,-0.0 2,-0.2 2,-0.0 -1,-0.1 -0.710 72.4 94.2 -86.9 97.9 118.0 4.7 0.1 4 4 A G S S- 0 0 75 -2,-1.1 3,-0.1 1,-0.1 0, 0.0 -0.761 75.4-106.2-156.5-158.0 119.7 2.9 3.0 5 5 A S S S+ 0 0 135 -2,-0.2 2,-0.5 1,-0.2 -1,-0.1 0.692 94.2 64.1-116.1 -39.8 120.7 3.1 6.7 6 6 A S + 0 0 103 1,-0.1 -1,-0.2 2,-0.0 2,-0.0 -0.790 63.3 173.7 -94.0 126.4 124.5 3.8 6.6 7 7 A G + 0 0 51 -2,-0.5 -1,-0.1 1,-0.1 -2,-0.1 0.097 39.4 104.2-104.8-142.3 125.6 7.0 5.1 8 8 A L + 0 0 169 1,-0.2 2,-0.5 -2,-0.0 -1,-0.1 0.883 54.0 152.7 65.2 39.4 129.0 8.8 4.8 9 9 A A + 0 0 65 -7,-0.0 -1,-0.2 1,-0.0 8,-0.1 -0.893 20.5 168.8-107.0 128.4 129.2 7.8 1.1 10 10 A M >> + 0 0 125 6,-0.7 3,-1.3 -2,-0.5 4,-0.8 -0.546 7.0 161.9-136.8 69.9 131.2 9.9 -1.3 11 11 A P T 34 S+ 0 0 80 0, 0.0 -1,-0.1 0, 0.0 5,-0.1 0.905 78.2 57.8 -55.3 -45.5 131.7 8.0 -4.6 12 12 A P T 34 S+ 0 0 124 0, 0.0 4,-0.0 0, 0.0 -2,-0.0 0.714 106.3 57.4 -59.5 -19.4 132.6 11.3 -6.5 13 13 A G T <4 S- 0 0 48 -3,-1.3 4,-0.0 3,-0.1 -4,-0.0 0.924 132.7 -41.0 -75.1 -93.2 135.4 11.7 -4.0 14 14 A N S < S- 0 0 92 -4,-0.8 3,-0.0 70,-0.0 0, 0.0 0.810 95.1 -73.9-105.7 -53.1 137.8 8.7 -4.0 15 15 A S S S- 0 0 37 -5,-0.5 70,-0.0 71,-0.1 73,-0.0 0.127 91.9 -40.1-177.0 -43.2 135.5 5.6 -4.2 16 16 A H S S- 0 0 90 -6,-0.2 -6,-0.7 -7,-0.1 -3,-0.1 0.143 110.8 -32.4-165.6 -58.1 133.8 5.0 -0.9 17 17 A G + 0 0 33 -8,-0.1 2,-0.7 -6,-0.1 71,-0.0 -0.053 67.9 153.7 179.6 64.6 135.9 5.7 2.2 18 18 A L + 0 0 5 71,-0.1 2,-0.3 69,-0.1 6,-0.1 -0.899 21.5 137.7-108.3 110.7 139.6 4.9 1.9 19 19 A E > - 0 0 108 -2,-0.7 3,-1.4 4,-0.1 17,-0.3 -0.863 58.3 -62.0-141.6 174.6 141.8 6.9 4.3 20 20 A V T 3 S+ 0 0 89 -2,-0.3 17,-0.2 1,-0.2 3,-0.1 -0.371 119.9 21.9 -62.5 133.3 144.8 6.6 6.6 21 21 A G T 3 S+ 0 0 55 15,-1.5 -1,-0.2 1,-0.4 2,-0.2 -0.008 101.2 104.9 99.4 -29.6 144.2 4.2 9.4 22 22 A S S < S- 0 0 48 -3,-1.4 14,-2.5 13,-0.1 -1,-0.4 -0.566 74.5-112.7 -86.5 150.0 141.4 2.4 7.7 23 23 A L E +A 35 0A 45 67,-0.4 67,-2.5 12,-0.2 2,-0.3 -0.572 39.9 173.4 -82.8 143.8 141.8 -1.1 6.1 24 24 A A E -AB 34 89A 0 10,-2.0 10,-1.3 65,-0.3 2,-0.3 -0.912 21.4-135.5-143.6 169.4 141.6 -1.6 2.4 25 25 A E E - B 0 88A 52 63,-2.6 63,-2.1 -2,-0.3 2,-0.4 -0.976 10.9-142.3-132.6 145.5 142.1 -4.2 -0.3 26 26 A V E - B 0 87A 12 6,-0.5 2,-1.2 -2,-0.3 6,-0.3 -0.875 17.2-128.6-109.7 139.1 143.9 -4.1 -3.7 27 27 A K + 0 0 132 59,-0.8 2,-0.2 -2,-0.4 -2,-0.0 -0.698 60.3 119.9 -87.4 94.1 142.7 -5.9 -6.8 28 28 A E S S- 0 0 112 -2,-1.2 4,-0.0 2,-0.1 -2,-0.0 -0.807 75.9 -88.9-142.0-177.9 145.7 -7.9 -8.0 29 29 A N S S+ 0 0 159 -2,-0.2 -1,-0.1 1,-0.1 -2,-0.0 0.980 111.1 59.4 -61.1 -59.6 146.9 -11.4 -8.7 30 30 A P S S- 0 0 62 0, 0.0 2,-0.8 0, 0.0 -1,-0.1 -0.630 87.0-136.3 -77.2 109.6 148.1 -12.2 -5.2 31 31 A P + 0 0 125 0, 0.0 2,-0.3 0, 0.0 -4,-0.1 -0.533 43.2 153.2 -70.0 104.6 145.2 -11.8 -2.7 32 32 A F - 0 0 37 -2,-0.8 -6,-0.5 -6,-0.3 2,-0.4 -0.812 34.3-137.0-128.7 169.3 146.6 -9.9 0.2 33 33 A Y + 0 0 91 -2,-0.3 22,-1.5 -8,-0.1 23,-0.3 -0.990 28.0 154.1-132.3 138.3 145.3 -7.6 3.0 34 34 A G E -AC 24 54A 2 -10,-1.3 -10,-2.0 -2,-0.4 2,-0.3 -0.992 34.7-115.7-157.9 160.2 146.7 -4.4 4.4 35 35 A V E -AC 23 53A 20 18,-1.0 18,-2.0 -2,-0.3 -12,-0.2 -0.751 37.8-102.7-102.1 148.3 145.8 -1.1 6.1 36 36 A I E + C 0 52A 1 -14,-2.5 -15,-1.5 -17,-0.3 16,-0.2 -0.347 43.7 160.6 -67.0 146.1 146.3 2.3 4.6 37 37 A R E + 0 0 82 14,-1.5 2,-0.4 1,-0.3 -1,-0.1 0.578 61.0 18.0-128.9 -64.1 149.3 4.4 5.9 38 38 A W E - 0 0 48 13,-0.2 13,-3.4 -19,-0.1 2,-0.5 -0.967 55.5-170.7-122.8 134.7 150.2 7.2 3.6 39 39 A I E + C 0 50A 51 -2,-0.4 2,-0.3 11,-0.2 11,-0.2 -0.924 39.5 96.5-126.8 105.9 148.1 8.8 0.8 40 40 A G E - C 0 49A 12 9,-1.2 9,-2.6 -2,-0.5 44,-0.1 -0.930 65.7 -92.6-165.5-172.1 149.8 11.3 -1.5 41 41 A Q - 0 0 90 -2,-0.3 7,-0.1 7,-0.2 5,-0.1 -0.963 36.5-130.7-126.1 114.9 151.5 11.9 -4.8 42 42 A P - 0 0 9 0, 0.0 2,-1.6 0, 0.0 3,-0.4 -0.089 40.5 -85.8 -57.4 159.8 155.3 11.7 -5.1 43 43 A P S S+ 0 0 130 0, 0.0 3,-0.1 0, 0.0 0, 0.0 -0.509 117.7 26.9 -72.1 87.6 157.3 14.6 -6.8 44 44 A G S S+ 0 0 77 -2,-1.6 2,-0.5 -3,-0.1 -3,-0.0 -0.133 113.5 51.9 157.4 -50.5 157.0 13.5 -10.4 45 45 A L S S- 0 0 37 -3,-0.4 2,-0.8 2,-0.1 0, 0.0 -0.945 71.4-140.4-121.4 112.7 153.9 11.4 -11.0 46 46 A N + 0 0 135 -2,-0.5 2,-0.2 -5,-0.1 -5,-0.1 -0.584 51.6 126.5 -73.2 107.8 150.6 12.8 -9.9 47 47 A E - 0 0 49 -2,-0.8 2,-0.9 -5,-0.1 -7,-0.2 -0.807 63.2-118.4-166.6 121.0 148.7 9.8 -8.5 48 48 A V - 0 0 48 -2,-0.2 36,-3.7 -7,-0.1 2,-0.6 -0.466 38.4-175.2 -64.6 101.2 147.0 9.1 -5.2 49 49 A L E -CD 40 83A 6 -9,-2.6 -9,-1.2 -2,-0.9 2,-0.7 -0.896 11.7-156.1-106.5 114.0 149.0 6.2 -3.8 50 50 A A E -CD 39 82A 0 32,-2.0 32,-1.0 -2,-0.6 2,-0.6 -0.788 17.3-132.0 -92.1 115.0 147.8 4.7 -0.6 51 51 A G E - D 0 81A 0 -13,-3.4 -14,-1.5 -2,-0.7 2,-0.5 -0.521 24.7-164.2 -69.0 113.8 150.5 2.9 1.3 52 52 A L E -CD 36 80A 1 28,-2.2 28,-3.5 -2,-0.6 2,-0.8 -0.869 10.2-146.3-104.4 130.5 149.2 -0.5 2.4 53 53 A E E -C 35 0A 38 -18,-2.0 -18,-1.0 -2,-0.5 26,-0.3 -0.837 16.3-139.8 -98.7 108.6 151.0 -2.5 5.1 54 54 A L E -C 34 0A 9 -2,-0.8 -20,-0.2 -20,-0.2 4,-0.1 -0.443 1.6-146.5 -67.8 133.8 150.7 -6.2 4.4 55 55 A E S S+ 0 0 119 -22,-1.5 2,-0.4 -2,-0.2 -1,-0.1 0.844 83.9 67.1 -68.7 -34.4 150.1 -8.3 7.5 56 56 A D S S- 0 0 132 -23,-0.3 2,-1.1 1,-0.0 -2,-0.1 -0.729 92.0-118.5 -92.2 136.6 152.1 -11.2 6.1 57 57 A E - 0 0 127 -2,-0.4 2,-0.4 21,-0.1 21,-0.2 -0.608 39.8-178.2 -76.1 101.1 155.9 -10.8 5.5 58 58 A C > - 0 0 74 19,-1.3 3,-1.2 -2,-1.1 2,-0.5 -0.862 29.2-118.2-105.7 135.4 156.3 -11.2 1.8 59 59 A A T 3 S+ 0 0 95 -2,-0.4 3,-0.1 1,-0.2 18,-0.0 -0.570 97.1 40.3 -73.1 119.3 159.7 -11.1 0.1 60 60 A G T 3 S+ 0 0 66 1,-0.5 -1,-0.2 -2,-0.5 17,-0.1 0.019 88.3 101.6 134.1 -28.4 159.8 -8.2 -2.4 61 61 A C < - 0 0 24 -3,-1.2 -1,-0.5 16,-0.2 2,-0.2 -0.191 64.2-121.5 -79.2 175.5 158.0 -5.5 -0.5 62 62 A T B -E 79 0B 54 17,-1.6 16,-1.4 14,-0.1 17,-0.9 -0.482 23.4-105.0-110.1-177.8 159.7 -2.5 1.3 63 63 A D S S- 0 0 60 14,-0.2 11,-0.9 13,-0.2 17,-0.1 -0.056 87.2 -62.3 -98.9 31.2 159.6 -1.2 4.8 64 64 A G S S+ 0 0 0 15,-0.4 7,-1.1 1,-0.2 8,-0.8 0.847 97.9 131.3 92.8 40.6 157.3 1.7 3.9 65 65 A T E -F 70 0C 39 14,-0.3 2,-0.5 5,-0.2 -1,-0.2 -0.972 34.1-169.4-130.9 119.0 159.5 3.6 1.5 66 66 A F E > S-F 69 0C 37 3,-1.3 3,-0.7 -2,-0.4 14,-0.0 -0.928 77.2 -15.7-111.3 120.6 158.3 4.7 -1.9 67 67 A R T 3 S- 0 0 169 -2,-0.5 -1,-0.2 1,-0.3 3,-0.1 0.817 129.1 -54.9 59.8 31.0 160.8 6.0 -4.5 68 68 A G T 3 S+ 0 0 75 -3,-0.2 2,-0.4 1,-0.1 -1,-0.3 0.784 116.9 115.0 73.7 27.4 163.3 6.3 -1.6 69 69 A T E < -F 66 0C 61 -3,-0.7 -3,-1.3 0, 0.0 2,-0.2 -0.820 57.3-148.5-134.0 94.4 161.0 8.5 0.4 70 70 A R E +F 65 0C 154 -2,-0.4 -5,-0.2 -5,-0.2 3,-0.1 -0.427 19.5 174.8 -63.8 125.2 159.7 7.0 3.7 71 71 A Y + 0 0 60 -7,-1.1 2,-0.2 -2,-0.2 -1,-0.2 0.772 64.8 5.5-100.1 -36.4 156.2 8.2 4.4 72 72 A F S S- 0 0 23 -8,-0.8 2,-0.6 -34,-0.1 -1,-0.2 -0.823 76.0-101.8-139.4 177.8 155.5 6.2 7.5 73 73 A T + 0 0 99 -2,-0.2 2,-0.2 -3,-0.1 -9,-0.1 -0.923 52.5 142.4-111.9 114.2 157.1 3.7 9.9 74 74 A C - 0 0 25 -11,-0.9 5,-0.1 -2,-0.6 3,-0.1 -0.810 49.6 -74.6-138.5 178.6 156.3 0.0 9.4 75 75 A A > - 0 0 44 -2,-0.2 3,-0.7 3,-0.2 2,-0.3 -0.095 59.0 -84.4 -69.9 173.9 157.8 -3.4 9.6 76 76 A L T 3 S+ 0 0 113 1,-0.2 -13,-0.2 2,-0.1 -1,-0.1 -0.635 109.1 7.9 -84.9 138.5 160.2 -4.8 7.0 77 77 A K T 3 S+ 0 0 89 -2,-0.3 -19,-1.3 -16,-0.1 -1,-0.2 0.886 106.9 96.6 61.0 40.0 158.8 -6.5 3.9 78 78 A K < + 0 0 40 -16,-1.4 2,-0.3 -3,-0.7 -3,-0.2 -0.073 55.8 89.0-149.2 37.7 155.3 -5.4 4.9 79 79 A A B +E 62 0B 0 -17,-0.9 -17,-1.6 -26,-0.3 2,-0.5 -0.856 42.4 171.1-144.5 105.1 154.7 -2.2 2.9 80 80 A L E -D 52 0A 45 -28,-3.5 -28,-2.2 -2,-0.3 2,-0.3 -0.959 20.4-147.8-119.6 119.1 153.2 -2.1 -0.6 81 81 A F E +D 51 0A 22 -2,-0.5 2,-0.3 -30,-0.2 -30,-0.2 -0.640 25.9 165.2 -85.8 139.2 152.1 1.1 -2.2 82 82 A V E -D 50 0A 16 -32,-1.0 -32,-2.0 -2,-0.3 2,-0.4 -0.952 44.9 -76.8-147.7 165.5 149.2 1.1 -4.6 83 83 A K E > -D 49 0A 92 -2,-0.3 3,-1.3 -34,-0.3 -34,-0.3 -0.516 31.4-150.3 -69.3 120.3 146.8 3.5 -6.4 84 84 A L G > S+ 0 0 4 -36,-3.7 3,-1.6 -2,-0.4 -1,-0.2 0.842 97.7 61.0 -58.5 -34.7 144.2 4.7 -3.9 85 85 A K G 3 S+ 0 0 117 -37,-0.6 -1,-0.3 1,-0.3 -36,-0.1 0.775 104.4 49.7 -64.1 -26.1 141.7 5.0 -6.8 86 86 A S G < S+ 0 0 65 -3,-1.3 -59,-0.8 2,-0.0 -1,-0.3 -0.062 94.1 107.3-102.9 31.3 142.1 1.3 -7.4 87 87 A C E < -B 26 0A 5 -3,-1.6 -61,-0.2 -61,-0.1 -69,-0.1 -0.720 54.5-149.3-108.5 159.7 141.5 0.4 -3.7 88 88 A R E -B 25 0A 135 -63,-2.1 -63,-2.6 -2,-0.3 -2,-0.0 -0.993 28.6-101.4-132.2 135.3 138.5 -1.2 -2.0 89 89 A P E -B 24 0A 57 0, 0.0 2,-0.7 0, 0.0 -65,-0.3 -0.258 32.6-142.6 -54.3 130.6 137.2 -0.7 1.5 90 90 A D + 0 0 20 -67,-2.5 3,-0.4 1,-0.1 -67,-0.4 -0.860 24.1 174.7-103.1 107.2 138.2 -3.6 3.8 91 91 A S > + 0 0 93 -2,-0.7 3,-0.9 1,-0.2 -1,-0.1 -0.046 45.0 116.9 -98.7 30.7 135.4 -4.5 6.3 92 92 A R T 3 S+ 0 0 153 1,-0.2 -1,-0.2 3,-0.0 -68,-0.0 0.813 91.3 25.0 -66.7 -30.5 137.4 -7.5 7.7 93 93 A F T 3 S+ 0 0 149 -3,-0.4 2,-0.6 2,-0.1 -1,-0.2 -0.057 93.8 126.8-123.6 30.4 137.5 -5.8 11.1 94 94 A A < - 0 0 58 -3,-0.9 2,-0.3 2,-0.0 -3,-0.1 -0.810 37.9-168.8 -95.3 122.8 134.4 -3.6 10.8 95 95 A S - 0 0 91 -2,-0.6 2,-0.4 0, 0.0 -2,-0.1 -0.806 10.0-163.9-110.8 152.1 131.9 -3.9 13.6 96 96 A L - 0 0 140 -2,-0.3 -2,-0.0 1,-0.2 0, 0.0 -0.858 69.3 -24.7-139.4 101.9 128.3 -2.6 13.8 97 97 A Q - 0 0 146 -2,-0.4 -1,-0.2 1,-0.1 5,-0.0 0.974 58.8-145.7 60.6 87.6 126.6 -2.4 17.2 98 98 A P S S+ 0 0 124 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.780 85.4 29.6 -52.1 -28.3 128.2 -5.1 19.4 99 99 A S S S- 0 0 83 1,-0.2 3,-0.0 0, 0.0 0, 0.0 -0.958 72.3-136.6-134.9 152.6 124.8 -5.6 20.9 100 100 A G S S+ 0 0 69 -2,-0.3 2,-0.7 1,-0.1 -1,-0.2 0.989 90.1 63.5 -70.8 -62.2 121.2 -5.3 19.8 101 101 A P + 0 0 116 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.536 55.1 170.1 -70.0 107.7 119.6 -3.5 22.8 102 102 A S + 0 0 103 -2,-0.7 2,-0.7 2,-0.0 -2,-0.1 0.816 51.0 95.0 -86.3 -34.6 121.3 -0.1 23.1 103 103 A S 0 0 110 1,-0.2 -1,-0.0 0, 0.0 0, 0.0 -0.444 360.0 360.0 -62.6 105.7 118.9 1.3 25.7 104 104 A G 0 0 142 -2,-0.7 -1,-0.2 0, 0.0 -2,-0.0 0.590 360.0 360.0 -69.7 360.0 120.6 0.6 29.0