==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIGASE 13-AUG-02 1IYF . COMPND 2 MOLECULE: PARKIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR E.SAKATA,Y.YAMAGUCHI,E.KURIMOTO,J.KIKUCHI,S.YOKOYAMA, . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4975.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 61.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 6 7.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 12 15.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 17.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 113 0, 0.0 2,-0.4 0, 0.0 63,-0.1 0.000 360.0 360.0 360.0 124.0 0.1 -15.4 0.8 2 2 A I E +a 64 0A 49 61,-2.3 63,-1.1 14,-0.3 2,-0.4 -0.955 360.0 169.6-132.5 115.4 2.7 -13.2 -0.8 3 3 A V E -aB 65 15A 0 12,-1.5 12,-1.8 14,-0.8 2,-0.5 -0.958 34.7-116.9-127.9 145.9 1.8 -10.0 -2.7 4 4 A F E -aB 66 14A 70 61,-1.8 63,-1.9 -2,-0.4 2,-0.8 -0.659 25.8-143.6 -80.8 126.6 4.0 -7.2 -4.1 5 5 A V E -aB 67 13A 7 8,-3.9 8,-3.2 -2,-0.5 2,-0.4 -0.809 20.3-173.3 -95.3 112.7 3.2 -3.9 -2.4 6 6 A R E -aB 68 12A 69 61,-1.6 63,-2.1 -2,-0.8 2,-0.2 -0.857 11.3-148.5-107.1 139.8 3.4 -1.0 -4.8 7 7 A F E > - B 0 11A 27 4,-1.9 2,-4.1 -2,-0.4 4,-0.5 -0.690 43.9 -86.8-101.3 155.2 3.2 2.7 -4.0 8 8 A N T 4 S+ 0 0 105 61,-0.3 2,-0.3 63,-0.3 62,-0.1 -0.255 108.9 68.2 -63.0 69.2 1.7 5.4 -6.3 9 9 A S T 4 S- 0 0 75 -2,-4.1 2,-3.1 2,-0.2 -2,-0.2 -0.935 109.5 -76.6-172.0 163.5 5.2 5.7 -7.9 10 10 A S T 4 S+ 0 0 128 -2,-0.3 2,-0.3 -4,-0.1 -2,-0.1 -0.381 99.2 98.9 -73.9 71.6 7.5 3.6 -10.0 11 11 A H E < +B 7 0A 135 -2,-3.1 -4,-1.9 -4,-0.5 2,-0.4 -0.817 45.4 177.0-160.5 115.5 8.5 1.5 -7.0 12 12 A G E -B 6 0A 32 -2,-0.3 -6,-0.3 -6,-0.2 56,-0.1 -0.965 9.9-161.6-125.5 140.6 7.2 -1.9 -5.9 13 13 A F E -B 5 0A 142 -8,-3.2 -8,-3.9 -2,-0.4 2,-0.3 -0.972 26.6-115.9-122.4 131.3 8.2 -4.0 -2.9 14 14 A P E -B 4 0A 68 0, 0.0 2,-0.4 0, 0.0 -10,-0.3 -0.459 33.5-166.4 -66.2 123.1 7.5 -7.8 -2.6 15 15 A V E -B 3 0A 7 -12,-1.8 -12,-1.5 -2,-0.3 2,-1.4 -0.922 22.0-139.2-114.1 136.7 5.2 -8.5 0.4 16 16 A E S S+ 0 0 156 -2,-0.4 -14,-0.3 -14,-0.3 2,-0.2 -0.520 78.6 58.1 -93.1 70.3 4.6 -11.9 1.9 17 17 A V S S- 0 0 26 -2,-1.4 -14,-0.8 -14,-0.1 2,-0.3 -0.883 98.7 -75.3 177.1 154.6 0.9 -11.4 2.4 18 18 A D - 0 0 30 -2,-0.2 11,-0.2 1,-0.2 -2,-0.1 -0.470 41.5-172.6 -64.9 118.4 -2.4 -10.7 0.6 19 19 A S S S+ 0 0 0 -2,-0.3 11,-0.2 1,-0.1 -1,-0.2 0.702 77.4 50.2 -88.0 -24.1 -2.2 -6.9 -0.1 20 20 A D S S+ 0 0 1 35,-0.1 6,-0.3 6,-0.1 36,-0.3 0.698 78.2 125.5 -89.8 -18.4 -5.7 -6.3 -1.4 21 21 A T S >S- 0 0 22 4,-0.2 5,-1.7 34,-0.1 6,-0.2 0.142 79.9 -33.3 -37.2 154.4 -7.6 -8.1 1.4 22 22 A S T >5S- 0 0 18 30,-0.6 4,-3.2 3,-0.2 3,-0.4 0.361 72.6 -99.5 -18.3 142.7 -10.3 -5.9 3.1 23 23 A I H >5S+ 0 0 53 1,-0.3 4,-1.7 2,-0.2 5,-0.2 0.805 128.2 48.2 -39.7 -39.4 -9.5 -2.2 3.3 24 24 A F H >5S+ 0 0 131 2,-0.2 4,-1.7 3,-0.2 -1,-0.3 0.951 117.3 41.0 -68.2 -49.5 -8.4 -2.8 6.9 25 25 A Q H >5S+ 0 0 96 -3,-0.4 4,-2.5 2,-0.2 5,-0.2 0.951 117.5 45.5 -63.1 -54.9 -6.2 -5.7 6.0 26 26 A L H XS+ 0 0 0 -4,-1.7 5,-1.9 7,-0.6 4,-0.3 0.777 115.0 56.4 -54.1 -30.9 1.0 1.0 5.3 32 32 A K H ><5S+ 0 0 126 -4,-2.4 3,-0.7 -5,-0.5 -1,-0.2 0.969 121.4 26.7 -66.9 -52.4 2.5 -1.0 8.2 33 33 A R H 3<5S+ 0 0 179 -4,-2.1 -2,-0.2 -5,-0.3 -1,-0.2 0.512 109.5 76.7 -85.9 -7.2 5.5 -2.2 6.2 34 34 A Q T 3<5S- 0 0 30 -4,-2.1 -1,-0.2 3,-0.3 -3,-0.2 0.496 109.2-115.3 -80.5 -4.6 5.3 0.9 3.9 35 35 A G T < 5S+ 0 0 57 -3,-0.7 40,-0.2 1,-0.3 -3,-0.2 0.907 88.6 92.5 69.5 37.5 6.9 3.0 6.7 36 36 A V S S-D 48 0C 13 3,-2.4 3,-3.1 22,-0.3 22,-0.2 -0.949 73.0 -10.7-136.3 157.1 -5.0 -4.2 -6.5 46 46 A A T 3 S- 0 0 53 20,-1.0 3,-0.1 1,-0.3 21,-0.1 0.678 125.7 -60.0 23.6 36.3 -5.1 -5.4 -10.2 47 47 A G T 3 S+ 0 0 71 1,-0.2 2,-0.6 21,-0.1 -1,-0.3 0.236 115.2 117.2 83.4 -14.6 -6.7 -2.0 -11.0 48 48 A K E < -D 45 0C 54 -3,-3.1 -3,-2.4 7,-0.1 3,-0.3 -0.783 68.6-123.2 -92.1 119.8 -9.6 -2.7 -8.7 49 49 A E E -D 44 0C 79 -2,-0.6 -5,-0.2 -5,-0.2 5,-0.1 -0.406 55.7 -57.2 -67.6 134.4 -9.8 -0.3 -5.8 50 50 A L S S+ 0 0 16 -7,-2.2 2,-0.5 -2,-0.1 -1,-0.2 0.362 70.2 170.4 -9.8 87.8 -9.7 -1.7 -2.2 51 51 A R >> - 0 0 103 -3,-0.3 5,-1.7 -31,-0.1 4,-1.6 -0.960 32.6-143.7-118.2 120.6 -12.7 -4.0 -2.2 52 52 A N T 45S+ 0 0 101 -2,-0.5 -30,-0.6 1,-0.2 6,-0.4 0.843 98.3 1.6 -46.2 -47.8 -13.2 -6.4 0.8 53 53 A D T 45S+ 0 0 89 5,-0.1 -1,-0.2 3,-0.1 -32,-0.1 0.509 134.7 53.5-120.1 -14.1 -14.5 -9.2 -1.4 54 54 A W T 45S+ 0 0 163 -5,-0.1 -2,-0.2 5,-0.1 -4,-0.1 0.703 120.7 24.9 -95.4 -25.5 -14.4 -7.8 -4.9 55 55 A T T <5S+ 0 0 0 -4,-1.6 5,-0.3 -35,-0.2 -3,-0.2 0.680 113.0 63.4-109.2 -30.6 -10.7 -6.8 -5.0 56 56 A V S > S+ 0 0 82 -5,-0.2 4,-1.0 1,-0.2 -4,-0.1 0.867 139.4 57.9 -78.3 -36.8 -8.6 -12.7 -2.6 58 58 A N H 4 S+ 0 0 104 -6,-0.4 -1,-0.2 2,-0.2 -5,-0.1 0.655 107.7 54.5 -65.8 -12.0 -12.3 -13.1 -2.9 59 59 A C H 4 S- 0 0 35 -8,-0.1 -2,-0.2 -7,-0.1 -3,-0.1 0.940 135.4 -56.3 -81.4 -78.7 -11.7 -11.0 -6.0 60 60 A D H < S+ 0 0 133 -4,-1.5 2,-0.3 -5,-0.3 -2,-0.2 -0.375 75.7 154.0-168.7 76.0 -9.1 -12.8 -8.0 61 61 A L < - 0 0 28 -4,-1.0 2,-0.2 4,-0.1 4,-0.1 -0.869 21.8-162.7-116.6 150.8 -5.8 -13.6 -6.1 62 62 A D - 0 0 95 -2,-0.3 3,-0.4 -60,-0.1 -60,-0.2 -0.577 45.8 -88.9-115.3 178.2 -3.2 -16.2 -6.5 63 63 A Q S S+ 0 0 136 1,-0.3 -61,-2.3 -2,-0.2 2,-0.7 0.912 127.9 37.1 -57.3 -39.5 -0.4 -17.4 -4.1 64 64 A Q E S+a 2 0A 134 -63,-0.1 -1,-0.3 -61,-0.1 -61,-0.2 -0.808 86.3 164.9-115.1 88.7 1.8 -14.7 -5.6 65 65 A S E -a 3 0A 7 -63,-1.1 -61,-1.8 -2,-0.7 2,-0.4 -0.590 29.1-139.7-100.6 165.6 -0.4 -11.7 -6.3 66 66 A I E -a 4 0A 75 -63,-0.3 -20,-1.0 -2,-0.2 2,-0.4 -0.987 18.0-171.4-128.9 122.0 0.5 -8.1 -7.0 67 67 A V E -a 5 0A 0 -63,-1.9 -61,-1.6 -2,-0.4 2,-0.8 -0.932 20.1-135.7-117.8 137.0 -1.5 -5.2 -5.6 68 68 A H E -a 6 0A 93 -2,-0.4 -24,-1.7 -63,-0.2 2,-0.4 -0.786 28.0-166.8 -92.3 106.8 -1.2 -1.5 -6.4 69 69 A I E -C 43 0B 0 -63,-2.1 2,-0.3 -2,-0.8 -61,-0.3 -0.792 22.1-170.3 -99.7 138.9 -1.2 0.5 -3.2 70 70 A V E +C 42 0B 28 -28,-1.3 -28,-2.3 -2,-0.4 -63,-0.1 -0.588 33.0 159.9-120.5 67.1 -1.7 4.2 -2.8 71 71 A Q - 0 0 0 -2,-0.3 -63,-0.3 -30,-0.2 -32,-0.1 -0.367 52.8 -74.2 -85.1 164.7 -0.8 4.5 0.8 72 72 A R - 0 0 91 -2,-0.1 -1,-0.1 1,-0.1 -32,-0.1 -0.416 57.4-114.2 -63.1 126.2 0.2 7.6 2.6 73 73 A P - 0 0 56 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.153 29.1-106.7 -60.3 155.7 3.9 8.5 1.6 74 74 A W - 0 0 130 -40,-0.1 2,-0.7 -38,-0.1 -38,-0.1 -0.671 23.2-146.5 -87.8 138.6 6.6 8.4 4.2 75 75 A R 0 0 161 -2,-0.3 -1,-0.0 -40,-0.2 -40,-0.0 -0.884 360.0 360.0-109.8 104.6 8.1 11.7 5.6 76 76 A K 0 0 235 -2,-0.7 0, 0.0 0, 0.0 0, 0.0 0.069 360.0 360.0 -57.5 360.0 11.8 11.5 6.4