==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER APOPTOSIS 05-SEP-02 1IYR . COMPND 2 MOLECULE: DNA FRAGMENTATION FACTOR ALPHA SUBUNIT; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.FUKUSHIMA,J.KIKUCHI,S.KOSHIBA,T.KIGAWA,Y.KURODA, . 82 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6538.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 58.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 9.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 41.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 5 A T 0 0 175 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -50.8 -12.1 24.7 -0.1 2 6 A G + 0 0 60 1,-0.2 2,-0.3 13,-0.0 13,-0.2 0.346 360.0 72.0 85.0 -7.7 -8.3 24.5 0.3 3 7 A I S S- 0 0 97 12,-0.1 2,-0.3 11,-0.1 -1,-0.2 -0.917 83.1-105.0-137.4 163.2 -8.6 21.0 1.8 4 8 A S - 0 0 31 -2,-0.3 2,-0.2 -3,-0.1 9,-0.0 -0.641 31.5-150.1 -90.1 146.1 -9.4 17.5 0.6 5 9 A R - 0 0 179 -2,-0.3 3,-0.4 1,-0.3 9,-0.1 -0.562 34.1 -66.6-108.2 173.9 -12.7 15.8 1.3 6 10 A E S S- 0 0 133 1,-0.2 2,-0.5 -2,-0.2 -1,-0.3 0.157 92.6 -39.3 -48.7 174.8 -13.7 12.1 1.8 7 11 A T S S+ 0 0 132 1,-0.0 -1,-0.2 4,-0.0 2,-0.2 -0.161 90.5 154.1 -44.4 94.3 -13.4 9.6 -1.1 8 12 A S - 0 0 81 -2,-0.5 3,-0.4 -3,-0.4 -1,-0.0 -0.667 46.7 -63.2-121.0 177.2 -14.6 11.9 -3.8 9 13 A S S S- 0 0 102 1,-0.2 -1,-0.3 -2,-0.2 2,-0.1 0.151 95.5 -35.5 -50.3 175.1 -14.2 12.3 -7.6 10 14 A D S S- 0 0 150 1,-0.1 2,-0.8 2,-0.0 -1,-0.2 -0.134 71.5-163.3 -43.0 100.9 -10.8 13.0 -9.1 11 15 A V - 0 0 61 -3,-0.4 2,-1.1 -2,-0.1 3,-0.1 -0.830 20.9-129.4 -96.9 106.9 -9.4 15.2 -6.4 12 16 A A - 0 0 89 -2,-0.8 -2,-0.0 1,-0.2 -1,-0.0 -0.374 55.0 -85.6 -58.6 96.8 -6.4 17.1 -7.5 13 17 A L - 0 0 41 -2,-1.1 -1,-0.2 1,-0.1 5,-0.1 0.383 56.4-144.3 -9.4 93.1 -4.2 16.1 -4.6 14 18 A A >> - 0 0 18 -3,-0.1 3,-1.9 1,-0.1 4,-1.2 -0.169 25.5-101.4 -66.2 163.1 -5.2 18.8 -2.1 15 19 A S H 3> S+ 0 0 68 1,-0.3 4,-3.1 -13,-0.2 5,-0.2 0.823 119.6 71.8 -55.5 -31.9 -2.7 20.3 0.3 16 20 A H H 3> S+ 0 0 108 1,-0.3 4,-1.1 2,-0.2 -1,-0.3 0.825 101.2 43.9 -54.5 -32.1 -4.1 18.1 3.0 17 21 A I H <> S+ 0 0 29 -3,-1.9 4,-1.5 2,-0.2 -1,-0.3 0.823 114.8 48.4 -81.2 -33.8 -2.4 15.2 1.2 18 22 A L H X S+ 0 0 53 -4,-1.2 4,-3.1 2,-0.2 -2,-0.2 0.769 105.4 59.8 -76.0 -28.1 0.8 17.1 0.7 19 23 A T H X S+ 0 0 76 -4,-3.1 4,-0.6 2,-0.2 5,-0.2 0.955 111.9 37.1 -65.4 -50.2 0.8 18.2 4.4 20 24 A A H <>S+ 0 0 35 -4,-1.1 5,-2.4 2,-0.2 3,-0.2 0.842 117.9 52.8 -70.7 -32.2 0.9 14.6 5.7 21 25 A L H <5S+ 0 0 5 -4,-1.5 -2,-0.2 3,-0.3 -1,-0.2 0.942 106.3 52.2 -66.6 -45.8 3.2 13.7 2.8 22 26 A R H <5S+ 0 0 115 -4,-3.1 -1,-0.2 28,-0.2 -2,-0.2 0.707 136.4 4.7 -60.2 -22.4 5.5 16.5 3.7 23 27 A E T <5S- 0 0 132 -4,-0.6 -3,-0.2 -3,-0.2 -2,-0.2 0.582 135.9 -11.8-127.2 -78.2 5.5 15.0 7.2 24 28 A K T 5 + 0 0 126 -5,-0.2 2,-0.5 2,-0.0 -3,-0.3 -0.224 66.1 149.2-135.1 54.5 3.7 11.8 8.1 25 29 A Q < - 0 0 25 -5,-2.4 6,-0.0 -4,-0.1 -8,-0.0 -0.735 42.7-135.1 -86.1 126.3 1.4 10.5 5.3 26 30 A A > + 0 0 11 -2,-0.5 5,-0.8 1,-0.1 4,-0.2 -0.694 26.9 175.8 -88.6 99.0 1.3 6.6 5.4 27 31 A P T 5S+ 0 0 2 0, 0.0 42,-0.3 0, 0.0 -1,-0.1 -0.063 72.1 69.7 -87.8 35.0 1.6 5.4 1.8 28 32 A E T 5S- 0 0 24 40,-0.1 44,-0.1 41,-0.1 8,-0.1 0.736 126.7 -28.2-110.7 -73.5 1.6 1.9 3.3 29 33 A L T 5S+ 0 0 96 43,-0.0 7,-0.0 7,-0.0 36,-0.0 0.519 121.8 79.8-122.2 -20.9 -1.8 0.9 4.7 30 34 A S T 5S+ 0 0 89 -4,-0.2 2,-0.1 2,-0.0 -4,-0.0 0.813 95.4 52.8 -62.0 -29.0 -3.2 4.3 5.7 31 35 A L S - 0 0 70 -2,-0.1 4,-1.7 -5,-0.0 5,-0.2 -0.153 43.6 -73.5-106.5-159.0 -6.1 3.0 -0.5 33 37 A S H > S+ 0 0 73 2,-0.2 4,-1.4 1,-0.2 5,-0.1 0.912 129.0 38.8 -68.4 -47.2 -5.5 1.7 -4.0 34 38 A Q H > S+ 0 0 101 2,-0.2 4,-3.3 3,-0.2 5,-0.3 0.835 114.3 54.1 -75.7 -33.7 -5.7 5.0 -5.8 35 39 A D H > S+ 0 0 79 2,-0.2 4,-1.6 1,-0.2 -2,-0.2 0.958 116.8 36.4 -65.2 -49.9 -3.9 7.0 -3.1 36 40 A L H X S+ 0 0 2 -4,-1.7 4,-1.8 2,-0.2 -1,-0.2 0.821 120.3 51.6 -71.2 -30.7 -0.9 4.8 -3.1 37 41 A E H X S+ 0 0 104 -4,-1.4 4,-1.4 2,-0.2 5,-0.2 0.977 110.4 44.4 -69.5 -57.0 -1.2 4.3 -6.9 38 42 A L H < S+ 0 0 81 -4,-3.3 4,-0.2 1,-0.3 -2,-0.2 0.857 116.9 49.2 -55.7 -34.3 -1.4 8.0 -7.8 39 43 A V H >< S+ 0 0 5 -4,-1.6 3,-0.7 -5,-0.3 -1,-0.3 0.853 104.6 57.4 -73.1 -34.7 1.5 8.4 -5.4 40 44 A T H 3< S+ 0 0 54 -4,-1.8 -2,-0.2 1,-0.3 -1,-0.2 0.757 109.7 45.6 -66.4 -23.2 3.4 5.5 -7.0 41 45 A K T 3< S+ 0 0 166 -4,-1.4 2,-0.8 1,-0.2 -1,-0.3 0.491 102.1 72.1 -95.7 -5.9 3.1 7.5 -10.2 42 46 A E S < S- 0 0 47 -3,-0.7 -1,-0.2 -5,-0.2 5,-0.1 -0.711 80.9-166.7-109.5 74.7 4.2 10.6 -8.3 43 47 A D >> - 0 0 99 -2,-0.8 4,-2.2 -3,-0.1 3,-1.4 0.004 41.7 -83.3 -58.2 167.4 7.8 9.7 -7.8 44 48 A P H 3>>S+ 0 0 13 0, 0.0 4,-3.3 0, 0.0 5,-0.6 0.786 120.7 77.2 -44.0 -35.2 10.1 11.5 -5.3 45 49 A K H 3>5S+ 0 0 186 2,-0.2 4,-0.7 1,-0.2 -3,-0.0 0.923 118.1 11.3 -43.5 -54.0 10.7 14.2 -8.0 46 50 A A H <>5S+ 0 0 48 -3,-1.4 4,-1.5 2,-0.2 3,-0.2 0.911 129.9 54.5 -89.3 -53.4 7.3 15.7 -7.3 47 51 A L H X5S+ 0 0 5 -4,-2.2 4,-1.3 1,-0.3 -2,-0.2 0.840 108.2 53.7 -50.5 -35.5 6.3 13.9 -4.1 48 52 A A H <5S+ 0 0 8 -4,-3.3 3,-0.4 -5,-0.4 -1,-0.3 0.934 99.4 59.6 -66.6 -46.2 9.6 15.1 -2.6 49 53 A V H >< - 0 0 106 -2,-0.2 4,-3.7 1,-0.2 5,-0.3 -0.505 49.9-130.2 -70.2 138.0 16.4 14.6 1.0 55 59 A I H > S+ 0 0 113 1,-0.3 4,-2.8 2,-0.2 5,-0.2 0.912 113.3 51.2 -55.5 -40.7 15.4 12.7 -2.0 56 60 A K H > S+ 0 0 138 1,-0.2 4,-1.5 2,-0.2 -1,-0.3 0.849 113.6 45.4 -63.5 -33.1 17.0 9.7 -0.4 57 61 A K H > S+ 0 0 87 -3,-0.3 4,-1.6 2,-0.2 -2,-0.2 0.897 113.5 46.9 -76.3 -43.0 15.0 10.4 2.7 58 62 A T H X S+ 0 0 3 -4,-3.7 4,-1.3 1,-0.2 -2,-0.2 0.863 114.2 49.8 -67.4 -33.5 11.7 11.0 0.8 59 63 A E H X S+ 0 0 75 -4,-2.8 4,-2.9 -5,-0.3 5,-0.2 0.875 102.1 61.5 -70.8 -38.0 12.4 7.8 -1.1 60 64 A T H X S+ 0 0 70 -4,-1.5 4,-1.9 1,-0.3 -2,-0.2 0.911 106.7 45.1 -54.8 -43.4 13.1 5.9 2.1 61 65 A V H X S+ 0 0 33 -4,-1.6 4,-2.5 1,-0.2 -1,-0.3 0.853 113.8 51.1 -67.6 -33.6 9.6 6.7 3.2 62 66 A Q H X S+ 0 0 17 -4,-1.3 4,-1.7 2,-0.2 -2,-0.2 0.820 107.5 52.4 -71.6 -33.0 8.5 5.7 -0.3 63 67 A E H X S+ 0 0 91 -4,-2.9 4,-1.8 2,-0.2 -2,-0.2 0.870 114.0 42.7 -71.3 -36.7 10.4 2.4 -0.1 64 68 A A H X S+ 0 0 46 -4,-1.9 4,-1.8 -5,-0.2 -2,-0.2 0.916 110.3 56.2 -73.5 -45.9 8.7 1.5 3.2 65 69 A C H X S+ 0 0 0 -4,-2.5 4,-1.5 2,-0.2 -2,-0.2 0.883 112.4 41.9 -53.7 -44.3 5.3 2.6 2.0 66 70 A E H >X S+ 0 0 89 -4,-1.7 4,-1.7 2,-0.2 3,-0.5 0.969 112.0 51.7 -69.6 -54.8 5.4 0.3 -1.0 67 71 A R H 3X S+ 0 0 158 -4,-1.8 4,-1.5 1,-0.3 -1,-0.2 0.780 110.9 53.1 -53.1 -26.0 6.9 -2.7 0.8 68 72 A E H 3X S+ 0 0 61 -4,-1.8 4,-3.2 2,-0.2 5,-0.3 0.873 101.0 58.4 -76.8 -40.2 4.1 -2.2 3.3 69 73 A L H < S+ 0 0 124 -4,-3.2 3,-0.8 1,-0.2 -1,-0.2 0.806 112.0 53.4 -64.7 -29.1 -0.1 -5.9 4.4 73 77 A L H >< S+ 0 0 112 -4,-0.9 3,-1.7 -5,-0.3 -1,-0.2 0.756 89.5 77.2 -76.1 -26.2 -1.9 -7.4 1.5 74 78 A Q G >< + 0 0 111 -4,-1.2 3,-3.8 -3,-0.4 -1,-0.2 0.636 65.1 96.0 -59.1 -13.9 -0.1 -10.7 2.0 75 79 A Q G < S+ 0 0 147 -3,-0.8 -1,-0.3 1,-0.3 -2,-0.1 0.757 79.2 58.2 -49.1 -25.4 -2.6 -11.3 4.8 76 80 A T G < S+ 0 0 130 -3,-1.7 -1,-0.3 -4,-0.0 -2,-0.2 0.408 82.6 122.1 -86.5 1.9 -4.6 -13.3 2.3 77 81 A Q < - 0 0 127 -3,-3.8 3,-0.1 1,-0.1 -3,-0.0 -0.214 69.0 -99.8 -63.2 155.8 -1.6 -15.6 1.6 78 82 A S - 0 0 100 1,-0.1 -1,-0.1 2,-0.1 0, 0.0 -0.003 54.4 -66.4 -67.2 178.6 -2.1 -19.4 2.2 79 83 A L - 0 0 119 1,-0.1 -1,-0.1 2,-0.0 0, 0.0 -0.088 39.7-119.2 -62.8 167.0 -1.0 -21.3 5.3 80 84 A H S S+ 0 0 177 -3,-0.1 -1,-0.1 2,-0.1 2,-0.1 0.649 88.2 90.3 -83.2 -16.8 2.7 -21.7 6.1 81 85 A S 0 0 65 1,-0.0 -2,-0.0 0, 0.0 -3,-0.0 -0.378 360.0 360.0 -78.7 159.4 2.5 -25.5 5.9 82 86 A L 0 0 218 -2,-0.1 -2,-0.1 0, 0.0 -1,-0.0 -0.844 360.0 360.0-116.1 360.0 3.1 -27.4 2.7