==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 06-SEP-02 1IYT . COMPND 2 MOLECULE: ALZHEIMER'S DISEASE AMYLOID; . SOURCE 2 SYNTHETIC: YES; . AUTHOR O.CRESCENZI,S.TOMASELLI,R.GUERRINI,S.SALVADORI,A.M.D'URSI, . 42 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4184.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 32 76.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 21.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 22 52.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D 0 0 177 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 128.0 -17.8 4.6 21.7 2 2 A A - 0 0 73 0, 0.0 4,-0.1 0, 0.0 0, 0.0 0.182 360.0 -24.8-150.2 -72.1 -14.9 7.1 21.0 3 3 A E S S+ 0 0 156 2,-0.1 0, 0.0 4,-0.0 0, 0.0 0.278 112.1 87.2-140.1 5.1 -11.7 5.6 19.7 4 4 A F S S+ 0 0 179 1,-0.1 3,-0.3 2,-0.1 0, 0.0 0.823 97.5 41.4 -76.0 -33.7 -11.7 2.0 20.9 5 5 A R S > S+ 0 0 174 1,-0.2 2,-2.6 2,-0.1 3,-0.6 0.947 103.7 63.6 -75.6 -57.2 -13.7 0.9 17.8 6 6 A H T 3 S+ 0 0 150 1,-0.2 -1,-0.2 -4,-0.1 -2,-0.1 -0.290 74.3 101.3 -77.9 58.4 -11.9 2.8 15.1 7 7 A D T >> S+ 0 0 92 -2,-2.6 4,-3.1 -3,-0.3 3,-1.4 0.833 78.0 44.0-101.4 -60.5 -8.5 1.1 15.5 8 8 A S H <> S+ 0 0 88 -3,-0.6 4,-2.8 1,-0.3 -2,-0.1 0.935 114.0 51.7 -53.4 -51.2 -8.3 -1.5 12.7 9 9 A G H 34 S+ 0 0 57 -4,-0.3 4,-0.3 2,-0.2 -1,-0.3 0.628 115.3 43.7 -64.4 -14.7 -9.7 1.0 10.1 10 10 A Y H <> S+ 0 0 143 -3,-1.4 4,-1.0 2,-0.1 -2,-0.2 0.874 117.2 43.4 -86.3 -54.7 -7.0 3.5 11.3 11 11 A E H X S+ 0 0 100 -4,-3.1 4,-1.7 1,-0.2 5,-0.2 0.732 98.3 80.7 -61.9 -30.2 -4.1 1.0 11.4 12 12 A V H >X S+ 0 0 63 -4,-2.8 4,-3.4 -5,-0.3 3,-1.7 0.932 101.7 27.0 -44.3 -80.5 -5.1 -0.7 8.1 13 13 A H H 3> S+ 0 0 114 -4,-0.3 4,-3.0 1,-0.3 5,-0.4 0.847 111.9 68.8 -58.9 -39.7 -3.6 1.7 5.5 14 14 A H H 3< S+ 0 0 102 -4,-1.0 4,-0.5 2,-0.2 -1,-0.3 0.850 120.9 21.5 -44.5 -37.7 -0.9 2.8 8.0 15 15 A Q H S+ 0 0 95 -4,-0.5 4,-2.7 -5,-0.4 -2,-0.2 0.958 120.2 49.0 -61.3 -55.1 4.1 -0.4 3.9 19 19 A F H X S+ 0 0 127 -4,-3.1 4,-2.9 2,-0.2 -2,-0.2 0.913 114.7 43.4 -52.7 -53.3 3.0 -4.0 3.2 20 20 A F H X S+ 0 0 111 -4,-3.0 4,-2.9 -5,-0.2 5,-0.3 0.942 113.9 50.5 -63.0 -47.2 1.7 -3.3 -0.4 21 21 A A H X S+ 0 0 61 -4,-2.4 4,-3.2 -5,-0.4 -1,-0.2 0.872 112.2 49.1 -59.2 -37.7 4.8 -1.2 -1.2 22 22 A E H X S+ 0 0 120 -4,-2.7 4,-3.1 2,-0.2 -2,-0.2 0.950 109.8 50.9 -59.2 -53.4 6.9 -4.1 0.2 23 23 A D H < S+ 0 0 89 -4,-2.9 -2,-0.2 1,-0.2 -1,-0.2 0.912 119.9 35.7 -54.2 -48.2 5.0 -6.6 -1.9 24 24 A V H >< S+ 0 0 40 -4,-2.9 3,-1.8 -5,-0.1 7,-0.3 0.925 116.6 54.3 -66.5 -49.6 5.6 -4.4 -5.0 25 25 A G H >< S+ 0 0 41 -4,-3.2 3,-1.2 1,-0.3 -2,-0.2 0.943 110.0 45.1 -56.9 -53.8 9.1 -3.3 -4.0 26 26 A S T 3< S+ 0 0 93 -4,-3.1 -1,-0.3 1,-0.3 -2,-0.1 0.021 117.5 48.7 -81.3 30.1 10.4 -6.8 -3.5 27 27 A N T X> + 0 0 73 -3,-1.8 4,-2.8 -2,-0.2 3,-1.8 0.005 62.5 128.8-156.6 32.4 8.8 -7.8 -6.9 28 28 A K H <> + 0 0 121 -3,-1.2 4,-2.4 1,-0.3 7,-0.2 0.888 69.7 69.2 -58.4 -39.4 9.9 -5.0 -9.3 29 29 A G H 34 S+ 0 0 67 1,-0.2 -1,-0.3 2,-0.2 4,-0.1 0.767 113.2 29.6 -46.4 -31.8 11.0 -7.8 -11.6 30 30 A A H X4 S+ 0 0 58 -3,-1.8 3,-1.5 -6,-0.2 -2,-0.2 0.866 117.2 53.0 -94.5 -54.2 7.2 -8.5 -12.0 31 31 A I H >X S+ 0 0 42 -4,-2.8 3,-1.8 -7,-0.3 4,-1.7 0.651 79.3 104.1 -64.6 -10.5 5.6 -5.0 -11.5 32 32 A I H 3X + 0 0 95 -4,-2.4 4,-3.2 -5,-0.3 5,-0.3 0.761 66.6 70.1 -31.5 -41.6 8.1 -3.9 -14.2 33 33 A G H <> S+ 0 0 52 -3,-1.5 4,-2.7 1,-0.2 -1,-0.3 0.936 105.2 37.1 -47.6 -53.6 5.0 -3.9 -16.5 34 34 A L H <> S+ 0 0 116 -3,-1.8 4,-2.1 2,-0.2 -2,-0.2 0.891 113.1 58.4 -67.9 -41.0 3.6 -0.9 -14.7 35 35 A M H X S+ 0 0 87 -4,-1.7 4,-0.9 2,-0.2 3,-0.4 0.952 113.8 37.6 -54.9 -51.1 7.1 0.6 -14.3 36 36 A V H >X S+ 0 0 94 -4,-3.2 4,-2.1 1,-0.2 3,-0.9 0.927 113.4 57.8 -64.0 -44.6 7.5 0.5 -18.1 37 37 A G H 3< S+ 0 0 37 -4,-2.7 4,-0.5 -5,-0.3 -1,-0.2 0.758 111.1 43.4 -58.4 -28.0 3.8 1.5 -18.5 38 38 A G H 3< S+ 0 0 44 -4,-2.1 -1,-0.3 -3,-0.4 -2,-0.2 0.589 108.6 58.3 -92.5 -16.6 4.6 4.6 -16.5 39 39 A V H << S+ 0 0 110 -3,-0.9 -2,-0.2 -4,-0.9 -3,-0.1 0.817 95.7 62.6 -79.7 -36.4 7.9 5.3 -18.3 40 40 A V S < S+ 0 0 115 -4,-2.1 2,-0.2 -5,-0.1 -2,-0.1 0.879 112.1 37.2 -59.1 -40.0 6.2 5.6 -21.7 41 41 A I 0 0 120 -4,-0.5 0, 0.0 0, 0.0 0, 0.0 -0.494 360.0 360.0 -96.4 176.9 4.2 8.6 -20.5 42 42 A A 0 0 160 -2,-0.2 -3,-0.1 0, 0.0 -4,-0.0 -0.325 360.0 360.0 58.8 360.0 5.5 11.4 -18.1