==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 04-DEC-02 1J1H . COMPND 2 MOLECULE: SMALL PROTEIN B; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; . AUTHOR T.SOMEYA,N.NAMEKI,H.HOSOI,S.SUZUKI,H.HATANAKA,M.FUJII, . 123 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8640.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 82 66.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 17.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 27 22.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 5.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 13.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 221 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -89.3 -1.6 -4.9 1.2 2 2 A A - 0 0 69 33,-0.1 2,-0.2 1,-0.0 3,-0.0 -0.672 360.0-135.2 -81.2 124.8 1.9 -6.0 0.2 3 3 A P - 0 0 65 0, 0.0 2,-0.3 0, 0.0 102,-0.1 -0.551 35.7 -90.1 -78.4 138.4 4.3 -6.1 3.2 4 4 A V S S- 0 0 3 -2,-0.2 101,-0.4 103,-0.2 31,-0.1 -0.240 92.2 -33.7 -49.6 107.9 7.7 -4.6 2.6 5 5 A L S S- 0 0 12 32,-0.9 2,-0.3 -2,-0.3 35,-0.1 0.324 74.2-123.2 57.6 158.3 9.7 -7.6 1.3 6 6 A E - 0 0 111 33,-0.3 2,-1.8 98,-0.1 3,-0.3 -0.977 15.2-111.5-139.6 153.0 9.0 -11.2 2.5 7 7 A N > + 0 0 28 -2,-0.3 4,-0.8 1,-0.2 5,-0.2 -0.531 53.7 148.7 -82.5 76.9 11.0 -14.1 4.2 8 8 A R H >> + 0 0 136 -2,-1.8 4,-1.7 33,-0.3 5,-0.7 0.876 58.1 62.9 -78.5 -42.2 11.0 -16.6 1.3 9 9 A R H >>S+ 0 0 58 32,-0.4 5,-1.5 -3,-0.3 4,-1.1 0.872 113.2 30.0 -56.8 -42.1 14.4 -18.4 1.9 10 10 A A H 45S+ 0 0 14 3,-0.3 -1,-0.2 2,-0.2 -2,-0.1 0.908 124.8 42.0 -88.9 -44.7 13.6 -19.9 5.3 11 11 A R H <5S+ 0 0 214 -4,-0.8 -2,-0.2 1,-0.2 -3,-0.1 0.844 130.9 32.0 -69.5 -27.9 9.8 -20.5 5.1 12 12 A H H <5S+ 0 0 133 -4,-1.7 -3,-0.2 -5,-0.2 -2,-0.2 0.830 140.0 10.9 -94.3 -42.6 10.4 -21.7 1.5 13 13 A D T < - 0 0 160 -2,-0.3 4,-0.7 47,-0.1 84,-0.2 -0.118 49.8 -87.0 -79.6-175.1 13.0 8.1 6.1 28 28 A G T >4 S+ 0 0 54 1,-0.2 3,-0.5 2,-0.2 4,-0.3 0.947 130.3 31.3 -66.1 -44.6 9.7 10.0 5.2 29 29 A T T >> S+ 0 0 77 1,-0.2 4,-1.8 2,-0.2 3,-1.0 0.610 98.1 88.2 -87.3 -9.7 9.5 8.7 1.6 30 30 A E H 3>>S+ 0 0 15 1,-0.3 4,-3.5 2,-0.2 5,-0.5 0.883 81.5 62.7 -56.9 -30.8 11.2 5.5 2.6 31 31 A V H 5S+ 0 0 124 -3,-1.0 4,-1.2 -4,-0.3 -2,-0.2 0.983 124.8 31.9 -70.2 -48.7 6.5 4.6 -0.2 33 33 A S H <5S+ 0 0 32 -4,-1.8 -2,-0.2 2,-0.2 -3,-0.2 0.861 126.4 44.7 -71.7 -36.1 9.6 2.8 -1.6 34 34 A L H ><5S+ 0 0 3 -4,-3.5 3,-1.4 -5,-0.4 -3,-0.2 0.967 122.2 35.4 -74.7 -52.4 9.9 0.6 1.5 35 35 A R H 3<> - 0 0 149 -61,-0.6 4,-1.8 -2,-0.5 3,-0.8 -0.357 39.5-123.8 -53.7 133.7 20.1 -4.5 19.4 83 83 A K H 3> S+ 0 0 100 1,-0.3 4,-2.2 2,-0.2 5,-0.4 0.918 112.1 58.1 -58.5 -36.7 23.7 -5.7 19.7 84 84 A H H 3> S+ 0 0 159 1,-0.2 4,-1.2 2,-0.2 -1,-0.3 0.901 109.0 48.3 -58.1 -33.4 22.6 -8.5 22.0 85 85 A E H <> S+ 0 0 63 -3,-0.8 4,-1.5 2,-0.2 5,-0.4 0.850 109.3 52.3 -73.5 -36.1 20.4 -9.6 19.1 86 86 A L H X S+ 0 0 0 -4,-1.8 4,-1.5 1,-0.2 5,-0.3 0.952 112.6 40.9 -69.7 -48.9 23.2 -9.3 16.5 87 87 A R H X S+ 0 0 158 -4,-2.2 4,-1.2 3,-0.2 -1,-0.2 0.838 115.0 52.4 -69.9 -32.4 25.8 -11.5 18.3 88 88 A R H < S+ 0 0 190 -4,-1.2 4,-0.4 -5,-0.4 -2,-0.2 0.947 117.0 33.4 -72.5 -47.6 23.3 -14.2 19.4 89 89 A L H >X S+ 0 0 0 -4,-1.5 3,-0.9 -5,-0.2 4,-0.8 0.919 124.4 44.3 -73.8 -44.2 21.6 -15.0 16.1 90 90 A L H 3X S+ 0 0 6 -4,-1.5 4,-1.3 -5,-0.4 3,-0.3 0.840 99.5 71.3 -70.8 -32.9 24.7 -14.4 14.0 91 91 A G H 3< S+ 0 0 36 -4,-1.2 -1,-0.2 -5,-0.3 -2,-0.2 0.743 97.6 52.2 -58.8 -19.4 26.9 -16.4 16.4 92 92 A K H X4 S+ 0 0 86 -3,-0.9 3,-1.8 -4,-0.4 4,-0.3 0.871 100.8 57.1 -87.2 -36.2 25.2 -19.6 15.3 93 93 A V H 3<>S+ 0 0 10 -4,-0.8 5,-0.6 -3,-0.3 3,-0.2 0.850 89.4 75.7 -62.4 -30.6 25.7 -19.2 11.5 94 94 A E T 3<5S+ 0 0 146 -4,-1.3 -1,-0.3 1,-0.2 -2,-0.1 0.720 75.4 88.6 -55.5 -15.3 29.4 -19.0 12.0 95 95 A Q T < 5S- 0 0 130 -3,-1.8 -1,-0.2 1,-0.1 2,-0.2 0.942 106.9 -72.3 -47.3 -84.0 29.3 -22.8 12.6 96 96 A K T 5S+ 0 0 174 -4,-0.3 27,-0.3 -3,-0.2 -1,-0.1 -0.554 108.0 13.7 178.1 111.3 29.7 -24.0 8.9 97 97 A G T 5S+ 0 0 50 1,-0.3 25,-2.1 -2,-0.2 2,-0.3 0.772 92.6 124.0 88.7 26.9 27.3 -23.8 6.0 98 98 A L E < -B 121 0A 22 -5,-0.6 -1,-0.3 23,-0.2 2,-0.3 -0.870 42.1-158.8-117.9 154.2 24.9 -21.4 7.7 99 99 A T E -B 120 0A 17 21,-0.9 21,-0.7 -2,-0.3 2,-0.4 -0.783 11.4-135.7-124.9 174.7 23.7 -18.0 6.4 100 100 A L + 0 0 19 -56,-0.4 -54,-0.4 -2,-0.3 19,-0.2 -0.983 31.4 157.2-134.1 123.3 22.2 -14.8 7.9 101 101 A V - 0 0 3 -2,-0.4 17,-2.5 17,-0.4 2,-2.2 -0.988 47.1-129.2-146.2 135.7 19.2 -13.1 6.4 102 102 A P - 0 0 0 0, 0.0 14,-0.4 0, 0.0 15,-0.3 -0.338 35.9-172.0 -79.7 54.8 16.6 -10.7 7.8 103 103 A L + 0 0 11 -2,-2.2 2,-0.5 1,-0.1 -95,-0.2 0.698 67.4 38.5 -20.4 -46.2 14.0 -13.1 6.2 104 104 A K E -E 116 0B 73 12,-1.1 12,-1.9 -3,-0.2 2,-0.6 -0.915 62.4-178.3-124.1 121.5 11.2 -10.6 7.0 105 105 A I E -E 115 0B 4 -2,-0.5 2,-0.3 -101,-0.4 10,-0.2 -0.911 10.2-174.2-112.9 111.4 11.4 -6.9 6.8 106 106 A Y E -E 114 0B 113 8,-2.7 8,-0.8 -2,-0.6 2,-0.4 -0.787 8.2-162.5-102.6 145.7 8.2 -5.1 7.9 107 107 A F + 0 0 12 -2,-0.3 2,-0.3 6,-0.3 6,-0.2 -0.962 15.2 176.3-133.7 151.9 7.9 -1.4 7.6 108 108 A N >> - 0 0 99 -2,-0.4 3,-1.1 4,-0.1 4,-1.0 -0.997 41.6-116.6-148.8 146.0 5.7 1.5 9.0 109 109 A E T 34 S+ 0 0 142 -2,-0.3 -78,-0.1 1,-0.3 4,-0.1 0.596 105.1 81.1 -62.5 -4.7 5.8 5.3 8.5 110 110 A R T 34 S- 0 0 217 2,-0.2 -1,-0.3 1,-0.1 3,-0.1 0.241 117.8-104.3 -84.7 17.7 6.5 5.5 12.3 111 111 A G T <4 S+ 0 0 23 -3,-1.1 2,-0.5 1,-0.2 -2,-0.2 0.865 87.7 126.4 64.6 30.6 10.2 4.7 11.6 112 112 A Y < + 0 0 151 -4,-1.0 2,-0.4 -87,-0.1 -2,-0.2 -0.903 27.3 161.4-126.5 107.3 9.4 1.2 12.9 113 113 A A - 0 0 0 -2,-0.5 -89,-1.8 -6,-0.2 2,-0.5 -0.965 29.4-139.3-121.9 136.3 10.4 -1.7 10.7 114 114 A K E -CE 23 106B 124 -8,-0.8 -8,-2.7 -2,-0.4 2,-0.5 -0.830 15.0-165.0-101.1 131.3 10.7 -5.2 12.1 115 115 A V E -CE 22 105B 1 -93,-2.2 -93,-2.0 -2,-0.5 2,-0.5 -0.931 1.1-164.2-115.6 127.4 13.5 -7.4 10.9 116 116 A L E -CE 21 104B 71 -12,-1.9 -12,-1.1 -2,-0.5 2,-0.4 -0.912 8.6-151.7-109.9 129.5 13.6 -11.2 11.5 117 117 A L - 0 0 0 -97,-1.7 2,-0.5 -2,-0.5 -97,-0.1 -0.792 7.1-167.0 -98.9 142.2 16.8 -13.1 11.0 118 118 A G - 0 0 2 -17,-2.5 2,-0.7 -2,-0.4 -17,-0.4 -0.905 4.0-163.2-130.6 109.9 16.8 -16.7 10.1 119 119 A L - 0 0 0 -101,-2.4 -102,-2.8 -2,-0.5 2,-0.5 -0.769 14.7-160.1 -87.9 118.1 20.1 -18.6 10.4 120 120 A A E -AB 16 99A 4 -2,-0.7 -21,-0.9 -21,-0.7 2,-0.9 -0.868 10.1-149.0-105.2 131.6 19.7 -21.7 8.3 121 121 A R E - B 0 98A 111 -106,-0.6 -23,-0.2 -2,-0.5 -106,-0.2 -0.807 8.7-170.6 -96.0 108.9 22.0 -24.6 9.0 122 122 A G 0 0 53 -25,-2.1 -1,-0.2 -2,-0.9 -24,-0.1 0.811 360.0 360.0 -70.4 -23.8 22.4 -26.3 5.6 123 123 A K 0 0 196 -27,-0.3 -1,-0.2 -26,-0.2 -26,-0.1 0.785 360.0 360.0 -98.9 360.0 24.1 -29.2 7.4