==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER REPLICATION/DNA 18-DEC-02 1J1V . COMPND 2 MOLECULE: 5'-D(*TP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*GP*G)-3'; . SOURCE 2 SYNTHETIC: YES; . AUTHOR N.FUJIKAWA,H.KURUMIZAKA,O.NUREKI,T.TERADA,M.SHIROUZU, . 94 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5949.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 73.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 59 62.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 374 A V 0 0 82 0, 0.0 2,-0.3 0, 0.0 92,-0.1 0.000 360.0 360.0 360.0 130.5 -20.0 35.1 26.5 2 375 A T > - 0 0 79 1,-0.1 4,-2.2 43,-0.1 3,-0.2 -0.756 360.0-126.8-104.4 152.5 -18.8 31.5 27.3 3 376 A I H > S+ 0 0 19 -2,-0.3 4,-2.9 1,-0.2 5,-0.2 0.909 112.1 56.2 -60.6 -41.6 -15.6 29.9 25.9 4 377 A D H > S+ 0 0 92 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.883 108.0 49.3 -58.7 -35.6 -17.6 27.0 24.6 5 378 A N H > S+ 0 0 78 -3,-0.2 4,-2.7 2,-0.2 -1,-0.2 0.917 109.6 50.8 -68.4 -44.5 -19.7 29.4 22.7 6 379 A I H X S+ 0 0 0 -4,-2.2 4,-3.0 1,-0.2 5,-0.3 0.929 110.6 50.1 -59.0 -46.1 -16.6 31.1 21.3 7 380 A Q H X S+ 0 0 12 -4,-2.9 4,-2.4 2,-0.2 -2,-0.2 0.911 112.6 45.1 -62.0 -44.7 -15.2 27.8 20.2 8 381 A K H X S+ 0 0 126 -4,-2.1 4,-2.4 -5,-0.2 5,-0.2 0.948 115.9 46.7 -65.9 -45.4 -18.4 26.7 18.4 9 382 A T H X S+ 0 0 24 -4,-2.7 4,-2.8 1,-0.2 -2,-0.2 0.937 114.4 46.1 -61.5 -48.6 -18.8 30.0 16.7 10 383 A V H X S+ 0 0 0 -4,-3.0 4,-2.2 -5,-0.2 -1,-0.2 0.907 111.4 53.2 -61.9 -42.2 -15.2 30.3 15.6 11 384 A A H <>S+ 0 0 5 -4,-2.4 5,-2.8 -5,-0.3 -1,-0.2 0.942 112.9 42.8 -58.3 -49.2 -15.2 26.7 14.3 12 385 A E H ><5S+ 0 0 136 -4,-2.4 3,-1.7 3,-0.2 -2,-0.2 0.937 110.9 56.7 -62.4 -46.5 -18.3 27.3 12.2 13 386 A Y H 3<5S+ 0 0 74 -4,-2.8 -1,-0.2 1,-0.3 -2,-0.2 0.871 115.8 35.3 -53.3 -43.9 -17.0 30.6 11.0 14 387 A Y T 3<5S- 0 0 53 -4,-2.2 -1,-0.3 -5,-0.1 -2,-0.2 0.220 111.7-118.5 -96.1 13.0 -13.8 29.1 9.6 15 388 A K T < 5S+ 0 0 165 -3,-1.7 2,-0.2 1,-0.2 -3,-0.2 0.900 75.1 115.7 51.2 46.9 -15.5 25.9 8.5 16 389 A I < - 0 0 36 -5,-2.8 2,-0.3 -6,-0.2 -1,-0.2 -0.725 66.9 -91.7-130.2-177.7 -13.5 23.6 10.8 17 390 A K >> - 0 0 157 -2,-0.2 3,-1.2 1,-0.1 4,-1.0 -0.731 21.3-125.0-102.6 150.2 -14.3 21.4 13.8 18 391 A V H >> S+ 0 0 54 -2,-0.3 4,-1.1 1,-0.3 3,-0.8 0.884 114.4 61.9 -55.3 -37.2 -14.3 22.3 17.5 19 392 A A H 3> S+ 0 0 63 1,-0.3 4,-2.7 2,-0.2 3,-0.4 0.851 95.6 60.3 -58.5 -32.8 -11.9 19.3 17.9 20 393 A D H <4 S+ 0 0 37 -3,-1.2 -1,-0.3 1,-0.2 -2,-0.2 0.854 100.3 54.7 -63.1 -34.3 -9.5 21.2 15.6 21 394 A L H << S+ 0 0 0 -4,-1.0 -1,-0.2 -3,-0.8 -2,-0.2 0.821 114.2 39.9 -68.7 -29.8 -9.4 24.0 18.2 22 395 A L H < S+ 0 0 69 -4,-1.1 -2,-0.2 -3,-0.4 -1,-0.2 0.810 96.4 99.6 -86.9 -34.0 -8.4 21.5 20.9 23 396 A S S < S- 0 0 49 -4,-2.7 -3,-0.0 -5,-0.2 7,-0.0 -0.085 77.7-127.9 -52.2 151.2 -6.0 19.5 18.8 24 397 A K + 0 0 183 2,-0.0 -1,-0.1 35,-0.0 -4,-0.1 0.487 66.3 130.9 -79.3 -5.0 -2.2 20.1 19.0 25 398 A R - 0 0 124 1,-0.1 5,-0.0 -5,-0.1 -2,-0.0 -0.278 41.1-166.6 -53.5 127.5 -2.1 20.4 15.2 26 399 A R + 0 0 222 4,-0.1 -1,-0.1 5,-0.1 5,-0.1 0.521 38.1 133.0 -97.3 -5.7 -0.2 23.6 14.3 27 400 A S >> - 0 0 51 1,-0.1 4,-3.1 4,-0.1 3,-2.0 -0.155 64.7-124.4 -45.7 134.9 -1.1 23.9 10.7 28 401 A R H 3> S+ 0 0 177 1,-0.3 4,-1.9 2,-0.2 -1,-0.1 0.821 105.5 72.3 -56.0 -33.7 -2.1 27.5 10.0 29 402 A S H 34 S+ 0 0 74 1,-0.2 -1,-0.3 2,-0.2 -2,-0.1 0.754 120.2 15.7 -55.5 -24.7 -5.5 26.4 8.6 30 403 A V H <> S+ 0 0 3 -3,-2.0 4,-2.4 2,-0.1 -2,-0.2 0.676 120.6 61.3-119.2 -31.0 -6.4 25.6 12.2 31 404 A A H X S+ 0 0 18 -4,-3.1 4,-3.0 2,-0.2 -3,-0.2 0.844 104.1 53.0 -66.2 -33.9 -3.9 27.3 14.5 32 405 A R H X S+ 0 0 60 -4,-1.9 4,-2.7 -5,-0.3 5,-0.2 0.966 111.5 44.0 -66.1 -53.2 -4.9 30.7 13.2 33 406 A P H > S+ 0 0 6 0, 0.0 4,-2.7 0, 0.0 -2,-0.2 0.913 114.4 52.7 -58.3 -36.8 -8.6 30.1 13.9 34 407 A R H X S+ 0 0 8 -4,-2.4 4,-2.6 2,-0.2 -2,-0.2 0.947 109.3 46.9 -62.0 -50.1 -7.5 28.6 17.3 35 408 A Q H X S+ 0 0 28 -4,-3.0 4,-3.0 2,-0.2 5,-0.2 0.901 111.8 52.1 -58.7 -40.1 -5.4 31.7 18.1 36 409 A X H X S+ 0 0 2 -4,-2.7 4,-2.5 1,-0.2 -2,-0.2 0.934 110.4 48.5 -62.3 -43.6 -8.4 33.9 17.1 37 410 A A H X S+ 0 0 0 -4,-2.7 4,-2.1 -5,-0.2 -2,-0.2 0.890 113.0 47.4 -64.2 -38.4 -10.6 31.9 19.4 38 411 A X H X S+ 0 0 5 -4,-2.6 4,-2.0 2,-0.2 -2,-0.2 0.941 111.9 48.7 -70.2 -43.8 -8.2 32.2 22.3 39 412 A A H X S+ 0 0 4 -4,-3.0 4,-2.1 1,-0.2 -2,-0.2 0.904 111.8 50.3 -62.0 -39.8 -7.7 35.9 21.8 40 413 A L H X S+ 0 0 0 -4,-2.5 4,-3.4 -5,-0.2 5,-0.4 0.919 105.3 56.9 -64.1 -41.8 -11.5 36.3 21.7 41 414 A A H X S+ 0 0 0 -4,-2.1 4,-1.8 1,-0.2 6,-0.4 0.922 110.9 44.4 -53.0 -45.8 -11.8 34.3 24.9 42 415 A K H < S+ 0 0 81 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.846 119.4 40.3 -69.0 -36.4 -9.4 36.8 26.5 43 416 A E H < S+ 0 0 117 -4,-2.1 -2,-0.2 -5,-0.1 -1,-0.2 0.754 122.3 39.3 -84.2 -28.5 -11.2 39.9 25.1 44 417 A L H < S+ 0 0 43 -4,-3.4 2,-0.2 -5,-0.2 -3,-0.2 0.687 116.5 41.9 -96.0 -23.2 -14.8 38.7 25.5 45 418 A T S < S- 0 0 14 -4,-1.8 -43,-0.1 -5,-0.4 0, 0.0 -0.674 73.1-123.8-120.3 176.7 -14.6 37.0 28.9 46 419 A N + 0 0 174 -2,-0.2 2,-0.1 2,-0.0 -4,-0.1 0.145 65.2 130.9-103.3 14.0 -13.1 37.5 32.3 47 420 A H - 0 0 69 -6,-0.4 -2,-0.1 1,-0.1 -3,-0.0 -0.437 57.9-119.0 -71.7 143.6 -11.3 34.1 32.3 48 421 A S > - 0 0 45 -2,-0.1 4,-2.0 1,-0.1 5,-0.2 -0.211 28.7-103.1 -73.4 170.1 -7.6 34.1 33.2 49 422 A L H > S+ 0 0 36 1,-0.2 4,-2.5 2,-0.2 5,-0.1 0.891 121.7 52.3 -64.0 -39.3 -4.9 33.0 30.8 50 423 A P H > S+ 0 0 63 0, 0.0 4,-2.5 0, 0.0 -1,-0.2 0.905 109.4 48.8 -64.4 -38.9 -4.5 29.6 32.6 51 424 A E H > S+ 0 0 95 2,-0.2 4,-2.1 1,-0.2 -2,-0.2 0.883 112.1 47.8 -67.4 -40.4 -8.3 28.9 32.4 52 425 A I H X S+ 0 0 0 -4,-2.0 4,-0.6 2,-0.2 7,-0.2 0.941 111.3 52.5 -66.4 -43.2 -8.5 29.8 28.7 53 426 A G H ><>S+ 0 0 0 -4,-2.5 6,-2.1 1,-0.2 3,-2.0 0.949 109.1 47.6 -55.0 -53.4 -5.4 27.6 28.1 54 427 A D H 3X5S+ 0 0 113 -4,-2.5 4,-1.6 4,-0.3 3,-0.5 0.911 107.4 59.1 -53.3 -44.1 -7.0 24.6 29.9 55 428 A A H 3<5S+ 0 0 34 -4,-2.1 -1,-0.3 1,-0.2 2,-0.2 0.607 100.8 58.3 -63.1 -13.2 -10.1 25.2 27.8 56 429 A F T <<5S- 0 0 0 -3,-2.0 -1,-0.2 -4,-0.6 3,-0.2 -0.486 137.9 -57.5-118.9 62.9 -8.1 24.8 24.6 57 430 A G T 45S- 0 0 47 -3,-0.5 -2,-0.2 -2,-0.2 -3,-0.2 0.733 96.9 -63.4 76.5 24.6 -6.7 21.3 24.8 58 431 A G S <> - 0 0 92 1,-0.1 4,-1.1 -7,-0.1 3,-0.9 -0.369 27.9-121.3 -69.7 151.0 -0.0 26.6 28.6 61 434 A H H 3> S+ 0 0 76 1,-0.2 4,-2.3 2,-0.2 5,-0.1 0.817 112.6 61.0 -65.3 -27.3 -1.1 30.1 29.6 62 435 A T H 3> S+ 0 0 74 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.811 98.9 57.2 -69.2 -26.6 1.9 31.6 27.8 63 436 A T H <> S+ 0 0 57 -3,-0.9 4,-2.2 2,-0.2 -1,-0.2 0.867 107.3 47.2 -69.2 -38.1 0.6 30.0 24.6 64 437 A V H X S+ 0 0 0 -4,-1.1 4,-2.8 2,-0.2 -2,-0.2 0.929 110.4 52.7 -67.7 -45.3 -2.7 32.0 25.0 65 438 A L H X S+ 0 0 58 -4,-2.3 4,-2.0 1,-0.2 -2,-0.2 0.916 110.2 48.8 -56.3 -42.8 -0.7 35.1 25.8 66 439 A H H X S+ 0 0 101 -4,-2.2 4,-2.8 1,-0.2 -1,-0.2 0.930 108.5 53.7 -63.4 -44.2 1.2 34.6 22.6 67 440 A A H X S+ 0 0 0 -4,-2.2 4,-2.8 1,-0.2 5,-0.3 0.944 106.5 51.6 -55.3 -49.9 -2.1 34.1 20.7 68 441 A C H X S+ 0 0 14 -4,-2.8 4,-2.2 1,-0.2 -1,-0.2 0.928 113.5 44.4 -53.8 -48.0 -3.4 37.4 22.0 69 442 A R H X S+ 0 0 155 -4,-2.0 4,-2.8 2,-0.2 -1,-0.2 0.899 112.5 50.6 -65.7 -41.9 -0.3 39.3 20.8 70 443 A K H X S+ 0 0 52 -4,-2.8 4,-3.0 1,-0.2 -1,-0.2 0.933 112.7 46.5 -62.5 -44.8 -0.2 37.5 17.4 71 444 A I H X S+ 0 0 4 -4,-2.8 4,-2.3 -5,-0.2 -1,-0.2 0.883 110.7 53.5 -64.8 -37.7 -3.8 38.3 16.7 72 445 A E H X S+ 0 0 110 -4,-2.2 4,-0.8 -5,-0.3 -2,-0.2 0.970 112.3 44.9 -57.7 -54.0 -3.2 41.9 17.9 73 446 A Q H >X S+ 0 0 71 -4,-2.8 4,-1.3 1,-0.2 3,-1.2 0.928 112.9 49.7 -54.3 -52.5 -0.4 42.1 15.4 74 447 A L H 3X S+ 0 0 15 -4,-3.0 4,-2.7 1,-0.3 8,-0.3 0.841 101.1 63.1 -58.7 -37.2 -2.3 40.5 12.5 75 448 A R H 3< S+ 0 0 91 -4,-2.3 -1,-0.3 1,-0.2 -2,-0.2 0.796 108.5 43.9 -59.2 -27.8 -5.3 42.8 13.1 76 449 A E H << S+ 0 0 168 -3,-1.2 -1,-0.2 -4,-0.8 -2,-0.2 0.750 119.9 40.1 -87.1 -27.8 -2.9 45.6 12.1 77 450 A E H < S+ 0 0 136 -4,-1.3 2,-0.4 1,-0.2 -2,-0.2 0.636 114.0 50.2 -97.6 -15.4 -1.3 43.9 9.2 78 451 A S X - 0 0 34 -4,-2.7 4,-2.7 -5,-0.2 3,-0.3 -0.939 53.5-161.9-135.1 117.7 -4.3 42.1 7.6 79 452 A H H > S+ 0 0 149 -2,-0.4 4,-1.8 1,-0.2 -1,-0.1 0.841 97.6 55.7 -59.0 -34.3 -7.7 43.6 6.7 80 453 A D H > S+ 0 0 106 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.896 109.4 43.7 -68.3 -39.4 -9.2 40.1 6.6 81 454 A I H > S+ 0 0 26 -7,-0.3 4,-2.6 -3,-0.3 -2,-0.2 0.919 112.2 54.4 -69.5 -41.5 -8.1 39.3 10.1 82 455 A K H X S+ 0 0 90 -4,-2.7 4,-1.6 -8,-0.3 -2,-0.2 0.867 111.8 45.7 -57.5 -35.4 -9.3 42.7 11.2 83 456 A E H X S+ 0 0 108 -4,-1.8 4,-3.5 -5,-0.2 5,-0.2 0.902 109.1 52.3 -74.9 -44.1 -12.7 41.7 9.6 84 457 A D H X S+ 0 0 25 -4,-2.5 4,-2.7 1,-0.2 5,-0.2 0.903 109.0 52.9 -59.1 -39.3 -12.9 38.3 11.1 85 458 A F H X S+ 0 0 28 -4,-2.6 4,-2.2 2,-0.2 -1,-0.2 0.949 114.1 40.9 -59.6 -51.0 -12.3 39.9 14.5 86 459 A S H X S+ 0 0 76 -4,-1.6 4,-2.6 2,-0.2 -2,-0.2 0.943 115.0 50.9 -63.3 -50.9 -15.1 42.4 14.0 87 460 A N H X S+ 0 0 65 -4,-3.5 4,-2.1 1,-0.2 -2,-0.2 0.914 112.3 47.3 -53.3 -48.9 -17.5 39.8 12.4 88 461 A L H X S+ 0 0 0 -4,-2.7 4,-3.1 -5,-0.2 5,-0.2 0.919 111.8 48.3 -62.9 -44.9 -16.9 37.3 15.3 89 462 A I H X S+ 0 0 49 -4,-2.2 4,-2.3 -5,-0.2 -1,-0.2 0.923 108.8 55.7 -62.0 -41.3 -17.4 39.9 18.1 90 463 A R H < S+ 0 0 196 -4,-2.6 -1,-0.2 2,-0.2 -2,-0.2 0.935 114.2 40.4 -53.2 -50.2 -20.6 41.1 16.3 91 464 A T H >< S+ 0 0 75 -4,-2.1 3,-1.7 1,-0.2 -2,-0.2 0.969 115.4 48.9 -64.6 -55.7 -21.9 37.5 16.4 92 465 A L H 3< S+ 0 0 12 -4,-3.1 -2,-0.2 1,-0.3 -1,-0.2 0.723 111.8 47.7 -61.0 -26.4 -20.7 36.6 20.0 93 466 A S T 3< 0 0 82 -4,-2.3 -1,-0.3 -5,-0.2 -2,-0.2 0.230 360.0 360.0-100.0 14.4 -22.1 39.7 21.6 94 467 A S < 0 0 154 -3,-1.7 -1,-0.2 -5,-0.1 -2,-0.1 0.828 360.0 360.0 -68.3 360.0 -25.5 39.4 20.0