==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 23-JAN-03 1J3C . COMPND 2 MOLECULE: HIGH MOBILITY GROUP PROTEIN 2; . SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; . AUTHOR J.KURITA,H.SHIMAHARA,M.YOSHIDA,S.TATE . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6873.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 54.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 5.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 10.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 39.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 199 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -59.7 -9.9 16.3 4.9 2 2 A K - 0 0 194 0, 0.0 2,-0.1 0, 0.0 8,-0.0 0.259 360.0 -1.2-167.6 -40.0 -9.7 14.7 1.5 3 3 A K + 0 0 161 1,-0.1 7,-0.0 7,-0.0 0, 0.0 -0.437 51.6 173.7-167.7 84.8 -7.0 16.3 -0.7 4 4 A K S S- 0 0 121 1,-0.2 -1,-0.1 -2,-0.1 6,-0.0 0.981 71.9 -34.0 -60.9 -56.5 -4.9 19.2 0.7 5 5 A D - 0 0 76 3,-0.2 5,-0.3 1,-0.1 -1,-0.2 -0.988 45.3-121.0-162.7 159.7 -2.5 19.4 -2.3 6 6 A P S S+ 0 0 126 0, 0.0 4,-0.2 0, 0.0 -1,-0.1 0.927 115.7 36.2 -73.3 -46.6 -0.8 17.2 -5.0 7 7 A N S S+ 0 0 150 2,-0.1 -2,-0.0 0, 0.0 0, 0.0 0.747 102.6 90.4 -79.4 -21.6 2.8 18.1 -4.1 8 8 A A S S- 0 0 9 1,-0.1 2,-1.7 68,-0.0 -3,-0.2 -0.496 93.7-106.9 -74.9 144.9 2.0 18.3 -0.3 9 9 A P - 0 0 26 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.520 44.8-161.5 -73.1 88.5 2.4 15.0 1.6 10 10 A K - 0 0 87 -2,-1.7 63,-0.1 -5,-0.3 -7,-0.0 0.195 46.2 -41.5 -56.1-171.6 -1.3 14.1 2.1 11 11 A R - 0 0 208 1,-0.1 -1,-0.2 58,-0.0 58,-0.0 -0.284 69.9-112.1 -56.6 139.5 -2.4 11.6 4.9 12 12 A P - 0 0 49 0, 0.0 -1,-0.1 0, 0.0 50,-0.1 -0.588 31.0-147.1 -77.0 133.3 -0.0 8.6 5.0 13 13 A P - 0 0 29 0, 0.0 3,-0.1 0, 0.0 52,-0.0 0.052 2.2-144.5 -82.4-162.5 -1.7 5.3 3.9 14 14 A S - 0 0 75 44,-0.0 2,-2.6 49,-0.0 3,-0.1 -0.217 50.1 -83.0-165.8 63.5 -0.8 1.9 5.4 15 15 A A S > S+ 0 0 1 1,-0.2 4,-2.5 43,-0.2 3,-0.3 -0.372 128.2 61.0 67.6 -75.5 -1.0 -1.0 2.8 16 16 A F H > S+ 0 0 81 -2,-2.6 4,-3.3 1,-0.2 5,-0.4 0.925 104.6 48.5 -47.2 -50.5 -4.8 -1.4 3.0 17 17 A F H > S+ 0 0 137 1,-0.2 4,-1.9 2,-0.2 5,-0.3 0.908 111.2 51.2 -59.2 -39.5 -5.4 2.2 1.9 18 18 A L H > S+ 0 0 11 -3,-0.3 4,-0.5 40,-0.2 -1,-0.2 0.889 117.0 40.0 -65.9 -37.2 -2.9 1.6 -1.0 19 19 A F H X S+ 0 0 11 -4,-2.5 4,-3.0 2,-0.2 3,-0.4 0.961 118.5 43.9 -77.4 -54.1 -4.8 -1.6 -2.0 20 20 A C H X S+ 0 0 10 -4,-3.3 4,-3.2 1,-0.2 -3,-0.2 0.962 113.9 50.2 -56.9 -53.1 -8.4 -0.4 -1.5 21 21 A S H < S+ 0 0 60 -4,-1.9 -1,-0.2 -5,-0.4 -2,-0.2 0.794 120.0 39.1 -57.8 -25.4 -7.8 3.0 -3.2 22 22 A E H < S+ 0 0 107 -4,-0.5 4,-0.4 -3,-0.4 -1,-0.2 0.737 120.3 43.1 -96.6 -26.4 -6.3 1.0 -6.1 23 23 A Y H >X S+ 0 0 99 -4,-3.0 4,-2.4 2,-0.1 3,-0.7 0.835 99.6 70.2 -88.5 -34.7 -8.7 -1.9 -6.2 24 24 A R H 3X S+ 0 0 82 -4,-3.2 4,-1.5 -5,-0.3 -3,-0.1 0.923 98.5 49.5 -48.2 -52.8 -12.0 0.0 -5.7 25 25 A P H 3> S+ 0 0 74 0, 0.0 4,-1.2 0, 0.0 -1,-0.3 0.821 109.5 54.6 -59.6 -27.6 -11.8 1.6 -9.2 26 26 A K H <> S+ 0 0 120 -3,-0.7 4,-0.8 -4,-0.4 3,-0.5 0.944 104.0 53.0 -69.8 -45.9 -11.2 -1.9 -10.5 27 27 A I H X S+ 0 0 19 -4,-2.4 4,-2.6 1,-0.2 3,-0.4 0.821 104.9 57.3 -57.8 -31.6 -14.4 -3.2 -8.8 28 28 A K H < S+ 0 0 87 -4,-1.5 -1,-0.2 -5,-0.2 -2,-0.2 0.881 96.9 60.1 -71.3 -36.2 -16.3 -0.4 -10.6 29 29 A S H < S+ 0 0 106 -4,-1.2 -1,-0.2 -3,-0.5 -2,-0.2 0.779 124.0 22.3 -63.1 -23.4 -15.3 -1.5 -14.1 30 30 A E H < S+ 0 0 131 -4,-0.8 -2,-0.2 -3,-0.4 -1,-0.2 0.594 124.9 52.6-117.1 -18.9 -17.0 -4.9 -13.4 31 31 A H < + 0 0 60 -4,-2.6 -1,-0.2 -5,-0.2 -2,-0.0 -0.837 51.6 166.7-123.3 96.1 -19.5 -4.0 -10.6 32 32 A P S S+ 0 0 127 0, 0.0 -1,-0.1 0, 0.0 -4,-0.1 0.866 83.3 50.2 -74.9 -36.7 -21.7 -1.0 -11.5 33 33 A G S S+ 0 0 65 1,-0.1 2,-2.3 2,-0.1 5,-0.2 0.691 80.0 110.8 -74.4 -16.9 -24.1 -1.7 -8.7 34 34 A L - 0 0 19 -7,-0.2 -1,-0.1 4,-0.1 -3,-0.1 -0.308 53.3-178.4 -59.7 80.2 -21.1 -1.9 -6.2 35 35 A S > - 0 0 68 -2,-2.3 4,-3.5 1,-0.1 5,-0.3 -0.212 48.5 -87.5 -74.6 173.0 -22.0 1.4 -4.4 36 36 A I H > S+ 0 0 117 2,-0.2 4,-1.8 3,-0.2 5,-0.2 0.840 127.8 61.7 -52.1 -30.4 -19.7 2.7 -1.6 37 37 A G H >> S+ 0 0 38 2,-0.2 4,-1.6 1,-0.2 3,-0.5 0.998 117.0 24.3 -60.2 -68.8 -21.8 0.6 0.8 38 38 A D H 3> S+ 0 0 89 1,-0.2 4,-2.0 -5,-0.2 5,-0.2 0.832 119.9 62.4 -67.8 -28.6 -21.0 -2.8 -0.8 39 39 A T H 3X S+ 0 0 3 -4,-3.5 4,-1.2 2,-0.2 -1,-0.2 0.842 104.2 48.9 -66.4 -29.8 -17.7 -1.4 -2.2 40 40 A A H S+ 0 0 157 -2,-0.8 3,-2.4 3,-0.1 5,-0.3 0.629 77.1 66.7-126.9 -42.5 1.2 -12.1 1.0 54 54 A D T 3 S+ 0 0 23 -3,-0.4 4,-0.4 1,-0.3 -2,-0.1 0.803 109.8 43.7 -54.9 -26.6 -1.3 -9.3 -0.1 55 55 A K T 3 S+ 0 0 99 -4,-0.3 -1,-0.3 2,-0.1 -39,-0.1 0.041 99.1 77.0-107.3 26.9 0.2 -7.1 2.7 56 56 A Q S < S+ 0 0 118 -3,-2.4 4,-0.3 3,-0.1 3,-0.2 0.879 105.8 20.5 -99.9 -55.2 3.9 -8.0 2.0 57 57 A P S > S+ 0 0 75 0, 0.0 3,-0.7 0, 0.0 4,-0.5 0.849 126.4 51.3 -83.4 -37.2 4.9 -6.0 -1.1 58 58 A Y T 3 S+ 0 0 79 -4,-0.4 4,-0.4 -5,-0.3 -43,-0.2 0.422 100.5 66.9 -80.5 4.9 2.2 -3.4 -0.9 59 59 A E T 3 S+ 0 0 69 -3,-0.2 4,-0.3 2,-0.1 -1,-0.2 0.687 90.1 60.3 -97.1 -20.0 3.0 -2.7 2.7 60 60 A Q S X S+ 0 0 103 -3,-0.7 3,-1.0 -4,-0.3 4,-0.3 0.782 92.2 68.4 -77.5 -24.6 6.5 -1.1 2.1 61 61 A K G >> S+ 0 0 106 -4,-0.5 3,-1.4 1,-0.3 4,-1.2 0.919 97.8 51.0 -60.8 -41.5 5.0 1.6 -0.1 62 62 A A G 34 S+ 0 0 7 -4,-0.4 -1,-0.3 1,-0.2 -2,-0.2 0.641 105.1 59.1 -72.1 -10.4 3.3 3.2 3.1 63 63 A A G <4 S+ 0 0 37 -3,-1.0 -1,-0.2 -4,-0.3 -2,-0.2 0.401 103.2 51.6 -98.0 4.3 6.8 3.1 4.8 64 64 A K T X4 S+ 0 0 131 -3,-1.4 3,-0.7 -4,-0.3 4,-0.4 0.783 106.1 48.6-105.7 -40.7 8.5 5.3 2.2 65 65 A L T 3X S+ 0 0 57 -4,-1.2 4,-1.0 1,-0.2 5,-0.2 0.499 103.4 66.2 -78.9 -0.2 6.1 8.3 2.0 66 66 A K H 3> S+ 0 0 108 2,-0.2 4,-1.3 3,-0.2 -1,-0.2 0.715 93.6 56.6 -92.5 -21.1 6.2 8.5 5.8 67 67 A E H <4 S+ 0 0 115 -3,-0.7 -2,-0.2 2,-0.1 -1,-0.2 0.649 115.3 38.2 -83.3 -12.4 9.9 9.4 6.0 68 68 A K H > S+ 0 0 146 -4,-0.4 4,-1.9 3,-0.1 5,-0.3 0.722 117.5 48.2-105.3 -30.4 9.2 12.5 3.8 69 69 A Y H X S+ 0 0 41 -4,-1.0 4,-2.9 2,-0.2 5,-0.4 0.963 107.8 52.6 -74.8 -53.6 5.8 13.5 5.2 70 70 A E H < S+ 0 0 126 -4,-1.3 -1,-0.2 1,-0.2 -3,-0.1 0.734 121.8 35.1 -56.4 -19.4 6.7 13.4 8.9 71 71 A K H 4 S+ 0 0 148 -5,-0.1 4,-0.3 2,-0.1 -1,-0.2 0.719 122.7 42.0-106.0 -29.0 9.7 15.7 8.1 72 72 A D H >X S+ 0 0 69 -4,-1.9 4,-1.9 1,-0.2 3,-1.2 0.870 106.1 59.8 -86.7 -39.6 8.2 17.9 5.3 73 73 A I H 3X S+ 0 0 18 -4,-2.9 4,-1.5 -5,-0.3 5,-0.2 0.764 92.0 72.4 -61.5 -21.0 4.7 18.5 6.9 74 74 A A H 3> S+ 0 0 73 -5,-0.4 4,-0.8 1,-0.2 -1,-0.2 0.897 110.3 29.0 -62.0 -37.0 6.5 20.1 9.9 75 75 A A H <4 S+ 0 0 78 -3,-1.2 -2,-0.2 -4,-0.3 -1,-0.2 0.741 111.0 67.7 -94.0 -26.1 7.4 23.1 7.7 76 76 A Y H < S+ 0 0 105 -4,-1.9 -2,-0.2 1,-0.1 -3,-0.2 0.836 106.4 43.7 -63.5 -29.3 4.3 22.9 5.4 77 77 A R H < + 0 0 143 -4,-1.5 -2,-0.2 2,-0.1 -3,-0.1 0.965 64.2 160.2 -78.9 -75.9 2.1 23.8 8.4 78 78 A A < 0 0 90 -4,-0.8 -3,-0.1 -5,-0.2 -4,-0.1 0.931 360.0 360.0 54.0 46.8 3.9 26.7 10.2 79 79 A K 0 0 210 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 -0.975 360.0 360.0-137.6 360.0 0.6 27.7 12.0