==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 23-JAN-03 1J3D . COMPND 2 MOLECULE: HIGH MOBILITY GROUP PROTEIN 2; . SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; . AUTHOR J.KURITA,H.SHIMAHARA,M.YOSHIDA,S.TATE . 78 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6669.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 59.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 38 48.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 239 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -59.9 -7.8 19.9 -3.1 2 2 A K + 0 0 205 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.150 360.0 107.7-103.9 39.8 -6.0 21.5 -0.1 3 3 A K - 0 0 108 4,-0.0 6,-0.0 3,-0.0 3,-0.0 -0.859 53.1-149.9-116.5 152.2 -2.5 20.3 -1.0 4 4 A D - 0 0 115 -2,-0.3 -2,-0.0 4,-0.1 0, 0.0 -0.696 27.9-113.0-114.9 170.4 0.5 22.2 -2.4 5 5 A P S S+ 0 0 114 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 0.807 118.7 48.5 -72.4 -28.7 3.4 21.2 -4.6 6 6 A N S S+ 0 0 120 2,-0.1 -3,-0.0 -3,-0.0 0, 0.0 0.788 93.2 96.5 -81.5 -26.9 5.9 21.7 -1.7 7 7 A A S S- 0 0 21 1,-0.1 2,-0.1 68,-0.0 65,-0.1 -0.128 87.4 -94.8 -58.0 161.6 3.8 19.6 0.7 8 8 A P - 0 0 28 0, 0.0 -1,-0.1 0, 0.0 -4,-0.1 -0.449 46.0 -94.0 -79.5 151.6 4.7 15.9 1.2 9 9 A K - 0 0 174 -2,-0.1 0, 0.0 1,-0.1 0, 0.0 -0.236 51.4 -89.2 -62.7 152.9 2.9 13.2 -0.8 10 10 A R - 0 0 126 1,-0.1 -1,-0.1 58,-0.0 55,-0.0 -0.096 55.6 -82.3 -57.0 163.2 -0.2 11.5 0.7 11 11 A P - 0 0 47 0, 0.0 -1,-0.1 0, 0.0 54,-0.1 -0.600 49.4-140.3 -73.6 112.1 0.4 8.4 2.9 12 12 A P - 0 0 36 0, 0.0 2,-0.3 0, 0.0 52,-0.2 -0.352 10.6-140.9 -70.8 151.9 0.7 5.4 0.5 13 13 A S > - 0 0 64 1,-0.1 4,-1.9 -2,-0.1 3,-0.3 -0.814 19.8-117.9-111.3 154.4 -1.0 2.1 1.4 14 14 A A H > S+ 0 0 22 -2,-0.3 4,-1.4 1,-0.3 3,-0.4 0.957 119.1 47.8 -56.3 -49.7 0.5 -1.4 0.9 15 15 A F H > S+ 0 0 76 1,-0.2 4,-1.9 2,-0.2 5,-0.3 0.817 107.6 59.3 -61.5 -26.2 -2.4 -2.3 -1.4 16 16 A F H > S+ 0 0 87 -3,-0.3 4,-2.4 2,-0.2 -1,-0.2 0.895 105.5 47.6 -71.6 -35.9 -1.8 1.0 -3.2 17 17 A L H X S+ 0 0 20 -4,-1.9 4,-2.0 -3,-0.4 5,-0.4 0.993 113.3 44.5 -65.0 -73.8 1.8 0.1 -4.1 18 18 A F H X S+ 0 0 3 -4,-1.4 4,-1.8 1,-0.3 3,-0.4 0.868 121.1 41.8 -35.3 -53.9 1.0 -3.5 -5.5 19 19 A C H X S+ 0 0 16 -4,-1.9 4,-0.5 -5,-0.3 -1,-0.3 0.920 108.3 60.1 -65.9 -40.9 -2.0 -2.1 -7.4 20 20 A S H < S+ 0 0 70 -4,-2.4 -1,-0.2 -3,-0.3 3,-0.2 0.838 112.8 39.1 -57.1 -30.7 -0.0 1.1 -8.5 21 21 A E H < S+ 0 0 66 -4,-2.0 -1,-0.2 -3,-0.4 -2,-0.2 0.765 119.6 44.6 -91.7 -25.9 2.5 -1.2 -10.2 22 22 A H H X S+ 0 0 49 -4,-1.8 4,-0.9 -5,-0.4 -2,-0.2 0.187 91.8 88.1-101.3 18.4 -0.0 -3.7 -11.7 23 23 A R H X S+ 0 0 118 -4,-0.5 4,-0.9 -3,-0.2 3,-0.2 0.922 86.9 45.7 -82.3 -44.7 -2.5 -1.0 -12.8 24 24 A P H 4 S+ 0 0 89 0, 0.0 4,-0.3 0, 0.0 -1,-0.2 0.564 109.8 59.6 -75.2 -5.4 -1.1 -0.4 -16.4 25 25 A K H >> S+ 0 0 142 2,-0.2 4,-1.1 1,-0.1 3,-0.6 0.852 101.6 49.2 -89.3 -37.7 -0.8 -4.2 -16.9 26 26 A I H 3< S+ 0 0 29 -4,-0.9 4,-0.2 1,-0.2 7,-0.2 0.756 105.9 59.5 -73.6 -20.8 -4.6 -5.0 -16.4 27 27 A K T 3< S+ 0 0 101 -4,-0.9 -1,-0.2 2,-0.2 6,-0.2 0.707 98.7 59.3 -80.0 -17.5 -5.5 -2.2 -18.9 28 28 A S T <4 S+ 0 0 94 -3,-0.6 -2,-0.2 -4,-0.3 -1,-0.2 0.954 112.7 34.7 -75.7 -49.4 -3.4 -3.9 -21.7 29 29 A E S < S+ 0 0 148 -4,-1.1 -1,-0.2 1,-0.2 -2,-0.2 0.396 128.1 42.7 -85.4 6.9 -5.4 -7.2 -21.7 30 30 A H S > S- 0 0 73 -4,-0.2 3,-1.5 -5,-0.1 2,-0.3 -0.584 75.6-160.0-152.6 83.9 -8.6 -5.3 -20.9 31 31 A P T 3 S+ 0 0 122 0, 0.0 3,-0.1 0, 0.0 -3,-0.1 -0.482 85.5 16.1 -67.4 125.6 -9.2 -2.0 -22.8 32 32 A G T 3 S+ 0 0 76 -2,-0.3 2,-0.4 1,-0.3 -5,-0.1 0.170 83.8 150.4 97.1 -19.6 -11.7 0.1 -20.9 33 33 A L < - 0 0 31 -3,-1.5 -1,-0.3 -7,-0.2 -3,-0.1 -0.250 39.5-144.7 -50.3 102.6 -11.3 -2.0 -17.7 34 34 A S > - 0 0 67 -2,-0.4 4,-0.8 1,-0.1 5,-0.1 0.188 29.7 -91.5 -56.9-171.5 -12.1 0.7 -15.1 35 35 A I T 4 S+ 0 0 83 1,-0.1 -1,-0.1 2,-0.1 -2,-0.1 0.214 116.6 67.6 -92.3 17.5 -10.2 0.7 -11.7 36 36 A G T > S+ 0 0 36 3,-0.1 4,-1.6 2,-0.1 5,-0.2 0.856 99.8 40.2-100.6 -53.6 -12.9 -1.5 -10.1 37 37 A D H > S+ 0 0 85 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.939 121.0 44.5 -63.3 -45.0 -12.6 -4.9 -11.9 38 38 A T H X S+ 0 0 3 -4,-0.8 4,-2.7 1,-0.2 5,-0.2 0.846 111.4 54.9 -69.5 -28.8 -8.8 -4.8 -11.9 39 39 A A H > S+ 0 0 28 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.818 108.2 49.3 -72.9 -27.0 -8.9 -3.6 -8.2 40 40 A K H X S+ 0 0 156 -4,-1.6 4,-0.8 2,-0.2 -2,-0.2 0.905 115.1 43.0 -77.4 -41.0 -11.0 -6.7 -7.4 41 41 A K H >X S+ 0 0 103 -4,-2.1 4,-1.6 2,-0.2 3,-1.1 0.973 113.6 50.4 -68.5 -53.3 -8.6 -9.0 -9.2 42 42 A L H 3X S+ 0 0 1 -4,-2.7 4,-4.1 1,-0.3 3,-0.5 0.930 105.4 56.5 -51.1 -49.1 -5.4 -7.4 -7.8 43 43 A G H 3X S+ 0 0 24 -4,-1.5 4,-1.8 1,-0.3 -1,-0.3 0.833 105.3 54.0 -55.5 -28.1 -6.7 -7.5 -4.2 44 44 A E H << S+ 0 0 108 -3,-1.1 -1,-0.3 -4,-0.8 -2,-0.2 0.891 115.3 37.9 -73.9 -36.9 -7.0 -11.3 -4.8 45 45 A M H >X S+ 0 0 76 -4,-1.6 4,-1.4 -3,-0.5 3,-0.9 0.872 111.9 59.0 -81.0 -36.7 -3.3 -11.5 -5.9 46 46 A W H >< S+ 0 0 38 -4,-4.1 3,-1.0 1,-0.3 -2,-0.2 0.966 107.4 46.0 -56.5 -51.7 -2.2 -9.0 -3.3 47 47 A S T 3< S+ 0 0 98 -4,-1.8 -1,-0.3 -5,-0.2 -2,-0.2 0.645 116.7 48.5 -67.2 -9.5 -3.5 -11.1 -0.4 48 48 A E T <4 S+ 0 0 139 -3,-0.9 -1,-0.2 -4,-0.2 -2,-0.2 0.560 86.6 106.6-105.2 -11.3 -1.8 -14.1 -2.2 49 49 A Q << - 0 0 59 -4,-1.4 -3,-0.0 -3,-1.0 5,-0.0 -0.376 58.6-149.7 -66.9 147.5 1.6 -12.4 -2.7 50 50 A S - 0 0 79 -2,-0.0 5,-0.3 4,-0.0 3,-0.2 0.124 50.8 -61.6 -93.8-146.4 4.4 -13.7 -0.5 51 51 A A S >> S+ 0 0 61 3,-0.2 3,-0.8 1,-0.2 4,-0.8 0.724 126.6 74.2 -76.3 -17.8 7.3 -11.6 0.7 52 52 A K T 34 S+ 0 0 170 1,-0.3 -1,-0.2 2,-0.1 2,-0.2 0.961 116.6 13.5 -60.0 -49.7 8.4 -11.1 -2.9 53 53 A D T 34 S+ 0 0 43 -3,-0.2 -1,-0.3 2,-0.1 -4,-0.1 -0.476 134.5 39.7-126.3 64.2 5.6 -8.6 -3.7 54 54 A K T <> S+ 0 0 79 -3,-0.8 4,-1.4 -2,-0.2 -3,-0.2 0.236 99.5 63.4-172.6 -34.2 4.2 -7.7 -0.2 55 55 A Q H X S+ 0 0 81 -4,-0.8 4,-1.5 -5,-0.3 3,-0.2 0.969 108.8 39.9 -72.7 -53.3 7.1 -7.3 2.3 56 56 A P H 4 S+ 0 0 69 0, 0.0 -1,-0.2 0, 0.0 -4,-0.1 0.565 114.7 57.6 -73.5 -6.5 8.9 -4.4 0.6 57 57 A Y H > S+ 0 0 50 2,-0.1 4,-0.9 3,-0.1 3,-0.3 0.829 108.2 41.5 -92.4 -35.0 5.5 -2.7 -0.2 58 58 A E H X S+ 0 0 75 -4,-1.4 4,-2.0 1,-0.2 5,-0.4 0.798 112.4 55.2 -82.4 -26.4 4.1 -2.5 3.4 59 59 A Q H < S+ 0 0 93 -4,-1.5 -1,-0.2 1,-0.2 -2,-0.1 0.532 109.1 49.6 -82.4 -2.5 7.5 -1.4 4.8 60 60 A K H 4 S+ 0 0 137 -3,-0.3 -1,-0.2 -5,-0.1 -2,-0.2 0.684 120.7 31.7-105.0 -25.1 7.5 1.5 2.3 61 61 A A H X S+ 0 0 2 -4,-0.9 4,-1.9 2,-0.1 3,-0.5 0.779 116.9 54.3-100.7 -34.8 4.0 2.8 3.0 62 62 A A H X S+ 0 0 42 -4,-2.0 4,-1.3 1,-0.2 5,-0.2 0.927 112.9 43.8 -66.2 -41.6 3.7 1.9 6.7 63 63 A K H 4 S+ 0 0 141 -5,-0.4 4,-0.3 1,-0.2 -1,-0.2 0.546 116.5 49.8 -80.2 -3.5 6.9 3.8 7.5 64 64 A L H > S+ 0 0 82 -3,-0.5 4,-0.6 -52,-0.2 -2,-0.2 0.670 105.3 54.6-104.9 -22.6 5.7 6.7 5.2 65 65 A K H X S+ 0 0 103 -4,-1.9 4,-0.9 2,-0.2 3,-0.4 0.930 109.6 45.4 -77.0 -45.4 2.2 7.1 6.7 66 66 A E H >X S+ 0 0 115 -4,-1.3 4,-0.7 1,-0.2 3,-0.5 0.893 111.5 53.5 -65.5 -37.1 3.3 7.6 10.3 67 67 A K H 3> S+ 0 0 119 -4,-0.3 4,-2.2 1,-0.2 -1,-0.2 0.754 100.3 63.1 -70.1 -20.9 6.0 10.0 9.1 68 68 A Y H 3X S+ 0 0 39 -4,-0.6 4,-2.8 -3,-0.4 5,-0.4 0.835 92.4 63.4 -72.5 -31.0 3.3 12.0 7.3 69 69 A E H X S+ 0 0 50 -4,-0.7 4,-1.3 -5,-0.4 3,-0.5 0.988 112.8 44.9 -62.0 -58.0 2.1 19.1 11.0 74 74 A A H 3X S+ 0 0 59 -4,-2.8 4,-1.0 1,-0.3 -1,-0.2 0.868 119.8 43.6 -55.3 -34.1 5.6 20.6 10.7 75 75 A Y H 3< S+ 0 0 135 -4,-2.7 -1,-0.3 -5,-0.3 -2,-0.2 0.721 104.7 67.9 -84.1 -20.4 4.7 21.7 7.2 76 76 A R H << S- 0 0 211 -4,-1.8 -2,-0.2 -3,-0.5 -3,-0.2 0.999 131.5 -42.5 -62.3 -69.1 1.2 22.9 8.3 77 77 A A H < 0 0 85 -4,-1.3 -2,-0.1 -5,-0.1 -3,-0.1 -0.207 360.0 360.0-161.6 59.4 2.2 25.9 10.5 78 78 A K < 0 0 224 -4,-1.0 -3,-0.1 -5,-0.2 -4,-0.1 0.818 360.0 360.0 -63.9 360.0 5.2 25.2 12.7