==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 19-FEB-03 1J3X . COMPND 2 MOLECULE: HIGH MOBILITY GROUP PROTEIN 2; . SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; . AUTHOR J.KURITA,H.SHIMAHARA,M.YOSHIDA,S.TATE . 77 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7077.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 64.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 36 46.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 230 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -52.5 -15.5 16.1 7.7 2 2 A G + 0 0 41 3,-0.0 3,-0.1 1,-0.0 0, 0.0 -0.566 360.0 136.1-162.5 91.0 -15.8 18.0 4.4 3 3 A K + 0 0 118 1,-0.2 2,-0.4 -2,-0.1 -1,-0.0 0.833 64.8 52.7-103.2 -67.6 -17.1 16.2 1.3 4 4 A G S S+ 0 0 61 6,-0.1 -1,-0.2 2,-0.0 6,-0.1 -0.574 72.6 178.4 -73.8 124.0 -19.6 18.5 -0.5 5 5 A D - 0 0 56 -2,-0.4 -3,-0.0 3,-0.3 5,-0.0 -0.884 37.4-130.3-126.2 159.3 -18.0 22.0 -1.1 6 6 A P S S- 0 0 119 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.902 104.1 -9.3 -73.3 -43.0 -19.1 25.2 -2.8 7 7 A N S S+ 0 0 159 2,-0.1 -2,-0.1 0, 0.0 0, 0.0 0.640 117.3 85.9-124.3 -40.5 -16.0 25.6 -4.9 8 8 A K S S- 0 0 129 1,-0.1 -3,-0.3 -4,-0.1 67,-0.0 -0.172 85.2 -99.8 -61.3 161.9 -13.5 22.9 -3.6 9 9 A P - 0 0 37 0, 0.0 2,-0.1 0, 0.0 -2,-0.1 -0.019 41.4 -98.2 -72.7-176.3 -13.7 19.4 -5.1 10 10 A R - 0 0 184 1,-0.2 -6,-0.1 -6,-0.1 -7,-0.1 -0.397 41.3 -88.1 -97.8 179.3 -15.4 16.5 -3.3 11 11 A G - 0 0 24 1,-0.1 -1,-0.2 -2,-0.1 2,-0.1 0.149 51.0 -94.2 -70.6-163.0 -13.9 13.7 -1.2 12 12 A K - 0 0 93 1,-0.1 -1,-0.1 56,-0.0 2,-0.1 -0.301 32.7-117.9-104.4-167.9 -12.7 10.4 -2.7 13 13 A M - 0 0 113 51,-0.3 2,-0.3 -2,-0.1 -1,-0.1 -0.330 20.5-148.6-116.2-159.5 -14.3 7.0 -3.2 14 14 A S > - 0 0 52 -2,-0.1 4,-1.2 1,-0.1 3,-0.1 -0.957 33.3 -96.8-161.9 177.9 -13.7 3.4 -2.0 15 15 A S H > S+ 0 0 20 -2,-0.3 4,-1.5 1,-0.2 46,-0.1 0.815 117.4 61.6 -77.3 -28.9 -14.0 -0.3 -2.9 16 16 A Y H > S+ 0 0 101 1,-0.2 4,-1.1 2,-0.2 -1,-0.2 0.840 105.1 48.3 -66.6 -30.0 -17.3 -0.6 -1.0 17 17 A A H > S+ 0 0 41 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.885 108.4 52.3 -77.9 -38.2 -18.9 1.9 -3.3 18 18 A F H X S+ 0 0 46 -4,-1.2 4,-2.6 1,-0.2 5,-0.3 0.826 101.7 63.4 -67.5 -28.5 -17.6 0.3 -6.5 19 19 A F H X S+ 0 0 13 -4,-1.5 4,-2.7 2,-0.2 5,-0.3 0.973 108.9 37.3 -60.9 -53.3 -19.1 -3.0 -5.3 20 20 A V H X S+ 0 0 29 -4,-1.1 4,-1.7 1,-0.2 -1,-0.2 0.836 117.1 54.3 -68.7 -29.5 -22.7 -1.8 -5.4 21 21 A Q H X S+ 0 0 78 -4,-1.7 4,-0.9 2,-0.2 -2,-0.2 0.875 116.0 37.1 -72.4 -35.3 -21.9 0.3 -8.5 22 22 A T H X S+ 0 0 44 -4,-2.6 4,-0.9 2,-0.2 -2,-0.2 0.823 117.9 50.1 -85.2 -32.3 -20.6 -2.8 -10.4 23 23 A S H < S+ 0 0 28 -4,-2.7 -2,-0.2 -5,-0.3 -3,-0.2 0.835 110.1 51.1 -75.0 -30.5 -23.2 -5.2 -8.9 24 24 A R H >X S+ 0 0 128 -4,-1.7 3,-1.5 -5,-0.3 4,-0.8 0.875 104.4 56.6 -74.3 -35.7 -26.1 -2.8 -9.8 25 25 A E H 3< S+ 0 0 123 -4,-0.9 4,-0.3 1,-0.3 -1,-0.2 0.814 105.5 52.6 -65.9 -27.2 -24.9 -2.5 -13.4 26 26 A E T 3< S+ 0 0 118 -4,-0.9 -1,-0.3 1,-0.2 -2,-0.2 0.107 97.4 70.8 -95.2 24.2 -25.2 -6.3 -13.8 27 27 A H T X4 S+ 0 0 36 -3,-1.5 3,-1.9 2,-0.1 4,-0.4 0.798 85.5 58.5-105.0 -43.7 -28.8 -6.4 -12.5 28 28 A K G >< S+ 0 0 170 -4,-0.8 3,-0.6 1,-0.3 -2,-0.1 0.796 91.6 74.6 -58.5 -25.1 -30.7 -4.8 -15.4 29 29 A K G 3 S+ 0 0 160 -4,-0.3 -1,-0.3 1,-0.2 -2,-0.1 0.816 120.4 11.1 -59.1 -27.1 -29.4 -7.7 -17.6 30 30 A K G < S+ 0 0 131 -3,-1.9 -1,-0.2 1,-0.1 -2,-0.2 0.101 123.8 65.9-138.2 23.7 -31.8 -10.0 -15.8 31 31 A H X + 0 0 66 -3,-0.6 3,-0.6 -4,-0.4 5,-0.1 -0.444 44.8 145.4-146.1 68.6 -34.1 -7.6 -13.9 32 32 A P T 3 S+ 0 0 107 0, 0.0 2,-0.6 0, 0.0 -1,-0.1 0.921 82.1 36.0 -72.8 -44.9 -36.2 -5.4 -16.2 33 33 A D T 3 S+ 0 0 151 -3,-0.1 2,-0.3 2,-0.0 -5,-0.0 -0.507 97.4 101.9-107.4 65.3 -39.3 -5.3 -14.0 34 34 A S < - 0 0 66 -2,-0.6 2,-1.0 -3,-0.6 -3,-0.1 -0.971 63.5-136.6-148.6 130.7 -37.7 -5.2 -10.5 35 35 A S + 0 0 111 -2,-0.3 2,-0.8 1,-0.1 -2,-0.0 -0.732 25.1 176.3 -89.4 102.5 -37.1 -2.3 -8.1 36 36 A V - 0 0 44 -2,-1.0 5,-0.1 -5,-0.1 -1,-0.1 -0.610 10.0-179.1-106.2 74.8 -33.6 -2.7 -6.7 37 37 A N > - 0 0 102 -2,-0.8 4,-0.5 1,-0.1 5,-0.3 0.098 44.4 -95.1 -58.9-176.1 -33.1 0.4 -4.5 38 38 A F H > S+ 0 0 144 2,-0.2 4,-4.0 3,-0.2 3,-0.4 0.939 124.8 40.1 -72.9 -45.3 -29.8 1.0 -2.7 39 39 A A H > S+ 0 0 55 1,-0.2 4,-1.4 2,-0.2 5,-0.2 0.923 111.2 56.6 -71.1 -40.9 -30.9 -0.6 0.6 40 40 A E H 4 S+ 0 0 144 1,-0.2 -1,-0.2 2,-0.1 -2,-0.2 0.727 125.5 24.8 -62.8 -16.7 -32.8 -3.5 -1.1 41 41 A F H >X S+ 0 0 28 -4,-0.5 4,-2.7 -3,-0.4 3,-1.1 0.753 114.5 59.9-113.7 -45.9 -29.5 -4.3 -2.9 42 42 A S H 3X S+ 0 0 41 -4,-4.0 4,-1.3 -5,-0.3 -3,-0.2 0.789 101.9 60.9 -56.1 -23.8 -26.7 -2.9 -0.6 43 43 A K H 3X S+ 0 0 154 -4,-1.4 4,-0.6 -5,-0.3 -1,-0.3 0.871 110.6 38.1 -72.5 -34.8 -28.1 -5.3 2.1 44 44 A K H X> S+ 0 0 134 -3,-1.1 4,-1.2 -5,-0.2 3,-0.6 0.894 113.0 54.6 -82.8 -41.8 -27.4 -8.4 -0.2 45 45 A C H 3X S+ 0 0 9 -4,-2.7 4,-3.2 1,-0.2 5,-0.3 0.842 102.9 59.7 -61.7 -29.5 -24.1 -7.1 -1.6 46 46 A S H 3X S+ 0 0 26 -4,-1.3 4,-2.1 -5,-0.3 -1,-0.2 0.864 99.2 56.5 -67.8 -32.8 -22.8 -6.7 2.0 47 47 A E H > - 0 0 53 1,-0.1 4,-3.0 0, 0.0 3,-0.6 -0.435 27.3 -95.3-103.8-178.5 -11.7 -12.8 0.0 54 54 A A H 3> S+ 0 0 69 1,-0.2 4,-1.3 2,-0.2 7,-0.1 0.763 120.0 66.5 -69.9 -22.1 -8.7 -10.7 -1.0 55 55 A K H 34 S+ 0 0 183 2,-0.2 -1,-0.2 1,-0.1 4,-0.1 0.847 117.2 24.6 -68.2 -30.5 -8.4 -12.6 -4.3 56 56 A E H X> S+ 0 0 94 -3,-0.6 3,-1.5 2,-0.1 4,-0.5 0.826 120.4 54.8-100.2 -43.6 -11.8 -11.0 -5.3 57 57 A K H >X S+ 0 0 59 -4,-3.0 4,-2.3 1,-0.3 3,-1.0 0.776 93.7 74.6 -62.4 -23.0 -11.9 -7.9 -3.2 58 58 A S H 3X S+ 0 0 53 -4,-1.3 4,-1.8 -5,-0.3 -1,-0.3 0.841 87.0 61.5 -60.2 -30.1 -8.5 -6.9 -4.7 59 59 A K H <4 S+ 0 0 116 -3,-1.5 4,-0.5 1,-0.2 -1,-0.3 0.832 112.0 37.0 -66.8 -29.0 -10.3 -6.0 -8.0 60 60 A F H S+ 0 0 103 -4,-0.5 4,-0.8 -5,-0.2 -2,-0.2 0.799 111.7 50.2 -82.2 -28.4 -9.9 0.7 -8.5 64 64 A A H X S+ 0 0 9 -4,-1.5 4,-2.2 2,-0.2 3,-0.4 0.910 110.3 48.1 -76.4 -41.8 -10.6 2.7 -5.3 65 65 A K H X S+ 0 0 139 -4,-1.5 4,-2.0 1,-0.2 5,-0.3 0.826 102.2 65.8 -68.5 -28.5 -6.9 3.5 -4.6 66 66 A S H X S+ 0 0 80 -4,-0.9 4,-0.6 1,-0.2 -1,-0.2 0.903 114.0 30.1 -61.0 -38.8 -6.5 4.6 -8.2 67 67 A D H X S+ 0 0 85 -4,-0.8 4,-1.1 -3,-0.4 -2,-0.2 0.780 113.3 63.5 -90.6 -29.1 -8.9 7.5 -7.7 68 68 A K H < S+ 0 0 111 -4,-2.2 4,-0.5 1,-0.2 3,-0.2 0.872 106.6 45.2 -63.6 -34.2 -8.1 8.0 -3.9 69 69 A A H >X S+ 0 0 54 -4,-2.0 4,-0.9 1,-0.2 3,-0.8 0.809 101.6 66.4 -79.5 -28.7 -4.5 9.0 -4.9 70 70 A R H 3< S+ 0 0 162 -4,-0.6 3,-0.3 -5,-0.3 -1,-0.2 0.829 94.8 59.6 -62.3 -28.5 -5.6 11.3 -7.7 71 71 A Y T >X S+ 0 0 60 -4,-1.1 3,-1.1 1,-0.2 4,-1.0 0.828 96.5 60.7 -70.3 -28.9 -7.2 13.6 -5.1 72 72 A D T <4 S+ 0 0 80 -3,-0.8 4,-0.3 -4,-0.5 -1,-0.2 0.844 104.6 49.4 -67.6 -30.6 -3.8 14.0 -3.4 73 73 A R T 3< S+ 0 0 178 -4,-0.9 -1,-0.3 -3,-0.3 -2,-0.1 -0.181 104.2 63.4-100.6 42.2 -2.4 15.6 -6.6 74 74 A E T <4 S+ 0 0 98 -3,-1.1 -2,-0.2 -2,-0.0 -1,-0.1 0.627 117.4 8.1-126.9 -56.3 -5.4 18.0 -7.1 75 75 A M S < S+ 0 0 116 -4,-1.0 2,-0.2 2,-0.1 -3,-0.1 0.774 121.9 61.8-100.8 -34.3 -5.5 20.6 -4.2 76 76 A K 0 0 129 -5,-0.5 0, 0.0 -4,-0.3 0, 0.0 -0.599 360.0 360.0 -92.2 155.2 -2.2 19.7 -2.4 77 77 A N 0 0 194 -2,-0.2 -1,-0.2 -4,-0.1 -2,-0.1 0.712 360.0 360.0 53.0 360.0 1.2 20.1 -4.0