==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-APR-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSPORT PROTEIN 05-FEB-13 4J3H . COMPND 2 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP54; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR S.R.SOLMAZ,G.BLOBEL,I.MELCAK . 80 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7966.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 68.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 52 65.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 453 A E 0 0 243 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 5.0 -9.3 49.6 126.2 2 454 A E + 0 0 144 1,-0.3 2,-0.3 0, 0.0 0, 0.0 0.534 360.0 56.1-140.8 -20.4 -5.6 50.0 125.5 3 455 A K - 0 0 163 2,-0.0 2,-0.3 0, 0.0 -1,-0.3 -0.931 56.9-170.2-125.7 152.2 -3.5 48.5 128.3 4 456 A Y - 0 0 201 -2,-0.3 2,-0.4 -3,-0.1 0, 0.0 -0.908 19.5-136.9-134.9 159.2 -3.4 44.9 129.8 5 457 A Y - 0 0 230 -2,-0.3 2,-0.5 0, 0.0 -2,-0.0 -0.980 20.2-157.7-111.3 132.8 -2.0 43.0 132.6 6 458 A X - 0 0 101 -2,-0.4 -2,-0.0 2,-0.0 2,-0.0 -0.932 23.1-114.5-107.8 133.4 -0.5 39.6 131.8 7 459 A D > - 0 0 116 -2,-0.5 4,-2.3 1,-0.1 5,-0.2 -0.289 23.8-118.5 -63.3 149.5 -0.2 36.9 134.6 8 460 A A H > S+ 0 0 81 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.858 110.0 53.8 -57.1 -42.0 3.3 35.9 135.5 9 461 A D H > S+ 0 0 79 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.934 109.2 47.3 -64.5 -45.5 2.9 32.3 134.6 10 462 A L H > S+ 0 0 13 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.935 113.7 48.5 -61.6 -42.8 1.7 33.0 131.0 11 463 A L H X S+ 0 0 71 -4,-2.3 4,-2.8 1,-0.2 5,-0.2 0.939 110.7 51.2 -63.3 -44.1 4.6 35.5 130.5 12 464 A R H X S+ 0 0 140 -4,-2.8 4,-2.4 1,-0.2 -1,-0.2 0.918 111.9 46.5 -56.0 -46.0 7.1 33.0 131.8 13 465 A E H X S+ 0 0 29 -4,-2.5 4,-2.2 2,-0.2 -1,-0.2 0.885 111.5 51.1 -71.6 -36.2 5.8 30.3 129.5 14 466 A I H X S+ 0 0 42 -4,-2.5 4,-2.5 2,-0.2 5,-0.2 0.956 111.2 47.5 -61.3 -49.8 5.8 32.6 126.5 15 467 A K H X S+ 0 0 130 -4,-2.8 4,-2.5 1,-0.2 -2,-0.2 0.908 111.7 51.2 -59.2 -41.4 9.4 33.7 127.1 16 468 A Q H X S+ 0 0 89 -4,-2.4 4,-2.5 -5,-0.2 -1,-0.2 0.907 110.2 49.5 -62.6 -42.0 10.5 30.1 127.5 17 469 A H H X S+ 0 0 18 -4,-2.2 4,-2.8 2,-0.2 -1,-0.2 0.913 111.7 47.6 -61.6 -45.2 8.8 29.1 124.2 18 470 A L H X S+ 0 0 92 -4,-2.5 4,-2.8 2,-0.2 -2,-0.2 0.923 112.1 49.7 -65.7 -41.0 10.5 32.0 122.3 19 471 A K H X S+ 0 0 138 -4,-2.5 4,-2.2 1,-0.2 -2,-0.2 0.935 113.8 45.6 -62.2 -45.5 13.9 31.2 123.8 20 472 A Q H X S+ 0 0 103 -4,-2.5 4,-2.3 2,-0.2 -2,-0.2 0.890 111.4 52.3 -66.6 -40.6 13.5 27.5 122.9 21 473 A Q H X S+ 0 0 62 -4,-2.8 4,-3.1 1,-0.2 5,-0.3 0.976 110.6 49.0 -55.0 -53.9 12.2 28.4 119.4 22 474 A Q H X S+ 0 0 111 -4,-2.8 4,-2.5 1,-0.3 5,-0.2 0.874 110.2 48.8 -57.8 -43.1 15.3 30.6 118.9 23 475 A E H X S+ 0 0 119 -4,-2.2 4,-1.8 1,-0.2 -1,-0.3 0.924 115.6 46.1 -65.1 -39.0 17.8 28.0 120.0 24 476 A G H X S+ 0 0 21 -4,-2.3 4,-2.6 2,-0.2 -2,-0.2 0.881 112.3 47.9 -70.4 -42.7 16.1 25.4 117.7 25 477 A L H X S+ 0 0 56 -4,-3.1 4,-2.9 2,-0.2 5,-0.3 0.925 110.6 52.5 -64.3 -43.4 15.9 27.7 114.7 26 478 A S H X S+ 0 0 65 -4,-2.5 4,-1.9 -5,-0.3 -2,-0.2 0.931 114.1 41.8 -61.8 -46.3 19.5 28.7 115.0 27 479 A H H X S+ 0 0 91 -4,-1.8 4,-2.3 -5,-0.2 5,-0.2 0.959 116.9 46.7 -63.9 -51.3 20.7 25.2 115.1 28 480 A L H X S+ 0 0 17 -4,-2.6 4,-2.5 1,-0.2 5,-0.2 0.922 112.8 48.6 -61.4 -45.5 18.5 23.8 112.4 29 481 A X H X S+ 0 0 127 -4,-2.9 4,-2.6 -5,-0.2 5,-0.2 0.923 110.9 51.9 -62.7 -39.2 19.1 26.7 110.0 30 482 A S H X S+ 0 0 54 -4,-1.9 4,-2.5 -5,-0.3 -1,-0.2 0.923 112.5 44.0 -63.7 -43.5 22.9 26.4 110.5 31 483 A I H X S+ 0 0 45 -4,-2.3 4,-2.2 2,-0.2 5,-0.2 0.881 113.4 50.7 -74.8 -31.8 22.9 22.6 109.8 32 484 A I H X S+ 0 0 51 -4,-2.5 4,-2.6 -5,-0.2 5,-0.3 0.967 112.9 46.4 -63.7 -50.3 20.6 22.9 106.8 33 485 A K H X S+ 0 0 149 -4,-2.6 4,-1.8 -5,-0.2 -2,-0.2 0.937 115.7 45.2 -58.5 -46.6 22.8 25.7 105.2 34 486 A D H < S+ 0 0 112 -4,-2.5 -1,-0.2 -5,-0.2 -2,-0.2 0.863 114.4 47.6 -69.5 -36.9 26.0 23.8 105.9 35 487 A D H < S+ 0 0 58 -4,-2.2 -1,-0.2 -5,-0.2 -2,-0.2 0.909 115.2 43.5 -71.5 -40.4 24.8 20.4 104.6 36 488 A L H < S+ 0 0 78 -4,-2.6 2,-1.1 -5,-0.2 -2,-0.2 0.774 98.9 76.5 -78.4 -24.6 23.2 21.8 101.4 37 489 A E < + 0 0 80 -4,-1.8 -1,-0.1 -5,-0.3 3,-0.1 -0.752 56.4 161.4 -85.1 102.4 26.2 24.0 100.6 38 490 A D + 0 0 131 -2,-1.1 2,-0.4 1,-0.2 -1,-0.2 0.564 59.5 47.1-104.2 -11.9 28.6 21.4 99.3 39 491 A I + 0 0 158 -3,-0.1 2,-0.4 2,-0.0 -1,-0.2 -1.000 66.4 176.3-131.1 128.2 31.0 23.6 97.4 40 492 A K - 0 0 154 -2,-0.4 2,-0.2 -3,-0.1 -3,-0.0 -0.999 31.6-117.0-135.6 137.3 32.4 26.7 98.9 41 493 A L 0 0 164 -2,-0.4 -2,-0.0 1,-0.1 0, 0.0 -0.491 360.0 360.0 -69.8 134.2 35.0 29.2 97.6 42 494 A V 0 0 204 -2,-0.2 -1,-0.1 0, 0.0 0, 0.0 -0.583 360.0 360.0 -71.5 360.0 38.1 29.4 99.8 43 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 44 453 B E 0 0 226 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 96.4 12.3 15.8 89.2 45 454 B E + 0 0 164 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.585 360.0 152.1 -79.1 121.4 14.1 18.3 91.4 46 455 B K - 0 0 170 -2,-0.5 2,-0.5 2,-0.0 0, 0.0 -0.938 36.0-126.9-149.7 165.7 15.0 16.8 94.7 47 456 B Y - 0 0 152 -2,-0.3 2,-0.1 2,-0.0 -11,-0.0 -0.971 14.7-135.4-131.3 119.4 17.6 17.0 97.5 48 457 B Y + 0 0 224 -2,-0.5 2,-0.3 -12,-0.1 -2,-0.0 -0.437 34.6 161.6 -62.7 136.2 19.7 14.3 99.1 49 458 B X - 0 0 68 -2,-0.1 2,-0.1 4,-0.0 -2,-0.0 -0.984 34.4-113.5-153.8 155.6 20.0 14.4 102.8 50 459 B D > - 0 0 77 -2,-0.3 4,-2.1 1,-0.1 3,-0.2 -0.380 34.1-107.0 -83.3 164.9 21.0 12.1 105.6 51 460 B A H > S+ 0 0 74 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.835 117.8 61.2 -57.7 -33.3 18.7 10.7 108.2 52 461 B D H > S+ 0 0 84 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.935 106.2 43.9 -62.6 -44.6 20.3 13.0 110.8 53 462 B L H > S+ 0 0 5 -3,-0.2 4,-2.1 2,-0.2 -2,-0.2 0.939 114.4 48.9 -67.3 -45.2 19.2 16.1 108.9 54 463 B L H X S+ 0 0 82 -4,-2.1 4,-2.7 1,-0.2 5,-0.2 0.918 110.3 52.6 -61.8 -38.1 15.7 14.8 108.2 55 464 B R H X S+ 0 0 114 -4,-2.7 4,-2.8 1,-0.2 -1,-0.2 0.906 108.5 49.9 -63.5 -41.4 15.4 13.9 111.9 56 465 B E H X S+ 0 0 53 -4,-2.1 4,-1.9 2,-0.2 -1,-0.2 0.878 111.0 49.0 -65.5 -38.6 16.4 17.4 113.0 57 466 B I H X S+ 0 0 44 -4,-2.1 4,-2.2 2,-0.2 5,-0.2 0.956 113.7 46.3 -62.2 -50.1 13.8 18.9 110.7 58 467 B K H X S+ 0 0 132 -4,-2.7 4,-2.5 1,-0.2 -2,-0.2 0.909 111.6 51.6 -58.5 -43.8 11.1 16.6 111.9 59 468 B Q H X S+ 0 0 79 -4,-2.8 4,-2.8 1,-0.2 5,-0.2 0.884 107.9 52.3 -63.3 -40.2 12.0 17.2 115.6 60 469 B H H X S+ 0 0 18 -4,-1.9 4,-2.4 2,-0.2 -1,-0.2 0.947 111.4 45.6 -63.3 -46.3 11.9 21.0 115.1 61 470 B L H X S+ 0 0 105 -4,-2.2 4,-2.3 1,-0.2 -2,-0.2 0.923 115.5 47.5 -63.6 -42.2 8.4 21.0 113.6 62 471 B K H X S+ 0 0 139 -4,-2.5 4,-2.4 1,-0.2 -1,-0.2 0.929 113.6 46.4 -63.3 -47.5 7.2 18.5 116.3 63 472 B Q H X S+ 0 0 97 -4,-2.8 4,-2.0 2,-0.2 -1,-0.2 0.846 111.0 52.6 -65.2 -36.3 8.6 20.5 119.2 64 473 B Q H X S+ 0 0 66 -4,-2.4 4,-2.4 -5,-0.2 -1,-0.2 0.928 110.7 47.5 -65.7 -44.6 7.3 23.8 117.8 65 474 B Q H X S+ 0 0 112 -4,-2.3 4,-2.7 1,-0.2 5,-0.2 0.920 110.9 51.5 -60.8 -44.7 3.8 22.4 117.6 66 475 B E H X S+ 0 0 104 -4,-2.4 4,-2.4 1,-0.2 -1,-0.2 0.899 110.3 49.8 -58.9 -41.0 4.1 21.0 121.1 67 476 B G H X S+ 0 0 13 -4,-2.0 4,-2.6 2,-0.2 -2,-0.2 0.920 110.8 48.0 -65.0 -44.4 5.1 24.4 122.3 68 477 B L H X S+ 0 0 72 -4,-2.4 4,-2.6 2,-0.2 -2,-0.2 0.911 111.9 49.8 -62.9 -42.6 2.3 26.2 120.6 69 478 B S H X S+ 0 0 64 -4,-2.7 4,-1.4 2,-0.2 -2,-0.2 0.892 109.2 53.1 -63.8 -39.1 -0.2 23.6 122.0 70 479 B H H < S+ 0 0 88 -4,-2.4 3,-0.5 -5,-0.2 4,-0.3 0.947 110.5 46.4 -58.8 -48.6 1.3 24.2 125.4 71 480 B L H >X S+ 0 0 21 -4,-2.6 4,-2.7 1,-0.2 3,-1.9 0.900 107.3 57.6 -63.1 -39.1 0.8 27.9 125.2 72 481 B X H 3X S+ 0 0 80 -4,-2.6 4,-2.1 1,-0.3 5,-0.3 0.835 96.2 63.8 -58.1 -32.8 -2.8 27.5 123.9 73 482 B S H 3< S+ 0 0 94 -4,-1.4 -1,-0.3 -3,-0.5 -2,-0.2 0.618 114.9 32.7 -68.4 -9.5 -3.5 25.5 127.1 74 483 B I H <4 S+ 0 0 39 -3,-1.9 -2,-0.2 -4,-0.3 -1,-0.2 0.764 128.3 32.5-107.2 -44.1 -2.8 28.8 128.9 75 484 B I H >X S+ 0 0 39 -4,-2.7 4,-2.0 1,-0.2 3,-1.1 0.611 90.9 88.1 -98.9 -15.2 -4.0 31.6 126.6 76 485 B K H 3X S+ 0 0 110 -4,-2.1 4,-1.2 -5,-0.3 -1,-0.2 0.907 90.5 48.4 -55.0 -47.3 -6.9 30.1 124.7 77 486 B D H 3> S+ 0 0 110 -5,-0.3 4,-0.6 1,-0.2 -1,-0.3 0.680 110.6 53.1 -70.7 -15.2 -9.6 31.1 127.2 78 487 B D H <4 S+ 0 0 98 -3,-1.1 -1,-0.2 2,-0.2 -2,-0.2 0.842 104.3 53.9 -83.2 -36.1 -8.2 34.6 127.3 79 488 B L H < S+ 0 0 118 -4,-2.0 -2,-0.2 1,-0.2 -1,-0.1 0.797 116.3 41.1 -62.6 -27.9 -8.4 35.0 123.5 80 489 B E H < 0 0 128 -4,-1.2 -1,-0.2 -5,-0.2 -2,-0.2 0.583 360.0 360.0 -98.7 -15.6 -12.0 34.0 123.8 81 490 B D < 0 0 173 -4,-0.6 -1,-0.2 -3,-0.2 -2,-0.2 -0.345 360.0 360.0-171.7 360.0 -12.9 36.1 126.9